Wall clock time and date at job start Wed Apr 1 2020 03:06:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08993 * 109.51759 * 2 1
4 4 C 1.52850 * 109.58906 * 239.98522 * 2 1 3
5 5 N 1.47152 * 108.63109 * 187.85477 * 4 2 1
6 6 C 1.34780 * 120.98366 * 230.54924 * 5 4 2
7 7 O 1.21547 * 120.00035 * 174.26198 * 6 5 4
8 8 C 1.47884 * 120.00303 * 354.25397 * 6 5 4
9 9 C 1.39917 * 120.02670 * 147.68690 * 8 6 5
10 10 C 1.38332 * 120.35768 * 180.30494 * 9 8 6
11 11 C 1.37756 * 120.41154 * 359.72605 * 10 9 8
12 12 C 1.40747 * 120.03952 * 0.02562 * 11 10 9
13 13 C 1.41440 * 120.17726 * 179.97438 * 12 11 10
14 14 H 1.08001 * 119.99691 * 335.67910 * 13 12 11
15 15 C 1.39934 * 119.99693 * 155.67714 * 13 12 11
16 16 N 1.30823 * 120.00443 * 342.50773 * 15 13 12
17 17 Si 1.86805 * 119.99489 * 162.50482 * 15 13 12
18 18 H 1.48500 * 109.47230 * 0.02562 * 17 15 13
19 19 H 1.48504 * 109.46892 * 120.00207 * 17 15 13
20 20 H 1.48500 * 109.47270 * 239.99687 * 17 15 13
21 21 C 1.38997 * 120.02424 * 327.45875 * 8 6 5
22 22 C 1.47161 * 118.02518 * 50.27406 * 5 4 2
23 23 C 1.53175 * 108.41720 * 309.90162 * 22 5 4
24 24 C 1.53068 * 109.48375 * 291.85541 * 23 22 5
25 25 C 1.53112 * 109.17226 * 183.34103 * 24 23 22
26 26 O 1.42903 * 109.40749 * 57.45852 * 25 24 23
27 27 C 1.42911 * 114.12528 * 298.80584 * 26 25 24
28 28 C 1.53066 * 109.47289 * 172.14823 * 23 22 5
29 29 O 1.42844 * 109.45242 * 52.01451 * 23 22 5
30 30 H 1.08995 * 109.46964 * 299.89724 * 1 2 3
31 31 H 1.08998 * 109.47041 * 59.89953 * 1 2 3
32 32 H 1.09004 * 109.46944 * 179.90198 * 1 2 3
33 33 H 1.08996 * 109.60517 * 68.02352 * 4 2 1
34 34 H 1.08998 * 109.50843 * 307.61953 * 4 2 1
35 35 H 1.07998 * 119.82402 * 0.02562 * 9 8 6
36 36 H 1.08002 * 119.79409 * 179.69748 * 10 9 8
37 37 H 1.07997 * 119.97963 * 180.02562 * 11 10 9
38 38 H 0.97000 * 119.99971 * 180.02562 * 16 15 13
39 39 H 1.08000 * 120.20068 * 359.97289 * 21 8 6
40 40 H 1.09005 * 109.67674 * 69.63794 * 22 5 4
41 41 H 1.09010 * 109.67726 * 190.13626 * 22 5 4
42 42 H 1.09003 * 109.51691 * 303.24833 * 24 23 22
43 43 H 1.08997 * 109.52403 * 63.42872 * 24 23 22
44 44 H 1.09001 * 109.48070 * 297.47698 * 25 24 23
45 45 H 1.08999 * 109.48076 * 177.43998 * 25 24 23
46 46 H 1.08995 * 109.48158 * 301.23236 * 27 26 25
47 47 H 1.09000 * 109.48306 * 181.18680 * 27 26 25
48 48 H 1.09004 * 109.52032 * 296.59281 * 28 23 22
49 49 H 1.09000 * 109.52344 * 56.71311 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0273 0.0000
4 6 2.0425 -0.7203 -1.2469
5 7 3.5015 -0.8752 -1.1341
6 6 4.3186 -0.5016 -2.1387
7 8 5.5241 -0.5396 -1.9877
8 6 3.7486 -0.0455 -3.4248
9 6 4.4150 0.9250 -4.1810
10 6 3.8848 1.3612 -5.3820
11 6 2.6981 0.8414 -5.8500
12 6 2.0161 -0.1393 -5.1056
13 6 0.7971 -0.6745 -5.5832
14 1 0.1883 -0.1033 -6.2684
15 6 0.3800 -1.9440 -5.1679
16 7 1.2390 -2.7715 -4.6304
17 14 -1.4035 -2.4571 -5.3809
18 1 -2.1658 -1.3487 -6.0099
19 1 -1.4722 -3.6598 -6.2494
20 1 -1.9902 -2.7712 -4.0534
21 6 2.5529 -0.5840 -3.8856
22 6 4.0422 -1.4445 0.1106
23 6 3.4302 -0.6889 1.2942
24 6 3.9576 0.7480 1.3103
25 6 3.4073 1.4717 2.5423
26 8 3.7842 0.7568 3.7208
27 6 3.2760 -0.5775 3.7822
28 6 3.8213 -1.3841 2.6006
29 8 2.0076 -0.6759 1.1659
30 1 -0.3633 0.5122 0.8909
31 1 -0.3633 0.5154 -0.8891
32 1 -0.3633 -1.0277 -0.0018
33 1 1.8031 -0.1327 -2.1331
34 1 1.5737 -1.7017 -1.3188
35 1 5.3460 1.3390 -3.8231
36 1 4.4044 2.1142 -5.9560
37 1 2.2907 1.1867 -6.7887
38 1 0.9499 -3.6516 -4.3429
39 1 2.0373 -1.3362 -3.3071
40 1 3.7810 -2.5008 0.1749
41 1 5.1265 -1.3331 0.1245
42 1 5.0468 0.7357 1.3513
43 1 3.6320 1.2657 0.4081
44 1 2.3203 1.5215 2.4793
45 1 3.8159 2.4814 2.5833
46 1 2.1873 -0.5543 3.7350
47 1 3.5897 -1.0434 4.7163
48 1 3.3986 -2.3886 2.6193
49 1 4.9074 -1.4446 2.6700
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000279288387.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:19
Heat of formation + Delta-G solvation = -97.713788 kcal
Electronic energy + Delta-G solvation = -32419.352586 eV
Core-core repulsion = 28311.287346 eV
Total energy + Delta-G solvation = -4108.065240 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-40.93784 -39.15337 -37.73181 -37.06403 -34.47314 -34.05236 -33.77379 -31.29553
-30.83096 -30.35871 -29.74247 -27.36978 -26.15036 -25.40517 -23.96401 -23.44080
-22.13396 -21.26686 -21.03893 -19.58212 -18.98920 -17.34345 -16.78464 -16.55591
-16.21509 -16.15177 -15.73878 -15.12158 -15.08564 -14.95729 -14.72885 -14.59088
-14.24329 -13.86998 -13.49770 -13.10874 -12.98164 -12.74986 -12.63720 -12.51077
-12.32872 -12.22581 -12.06911 -11.94315 -11.64617 -11.54225 -11.46328 -11.21202
-11.16493 -11.03262 -10.79956 -10.62043 -10.49218 -10.38181 -10.20913 -9.87386
-9.73401 -9.61259 -9.36814 -9.00559 -8.20432 -7.70360 -7.56730 -6.92725
-4.54239 2.16044 2.67060 2.98193 3.01715 3.04871 3.25508 3.56376
3.63549 3.78555 3.80274 4.46119 4.52135 4.60035 4.66063 4.87634
4.97209 5.08862 5.13024 5.21384 5.26704 5.36758 5.41444 5.44423
5.50512 5.56044 5.63326 5.69682 5.73350 5.80661 5.84137 5.88046
5.92579 6.01932 6.08596 6.10214 6.15155 6.27738 6.38436 6.60461
6.71819 6.84330 6.96490 7.07916 7.08482 7.22876 7.26377 7.59322
7.65163 7.78847 7.90915 8.01648 8.36802 8.67126 8.70364 8.76331
10.01501
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012660 B = 0.004038 C = 0.003432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2211.146331 B = 6932.176232 C = 8155.400745
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.070 3.930
3 H 0.064 0.936
4 C 0.068 3.932
5 N -0.611 5.611
6 C 0.573 3.427
7 O -0.555 6.555
8 C -0.123 4.123
9 C -0.186 4.186
10 C -0.100 4.100
11 C -0.203 4.203
12 C 0.099 3.901
13 C -0.460 4.460
14 H 0.081 0.919
15 C 0.077 3.923
16 N -0.793 5.793
17 Si 0.905 3.095
18 H -0.259 1.259
19 H -0.274 1.274
20 H -0.270 1.270
21 C -0.139 4.139
22 C 0.093 3.907
23 C 0.109 3.891
24 C -0.178 4.178
25 C 0.068 3.932
26 O -0.385 6.385
27 C 0.066 3.934
28 C -0.138 4.138
29 O -0.369 6.369
30 H 0.062 0.938
31 H 0.078 0.922
32 H 0.065 0.935
33 H 0.125 0.875
34 H 0.075 0.925
35 H 0.097 0.903
36 H 0.096 0.904
37 H 0.097 0.903
38 H 0.282 0.718
39 H 0.139 0.861
40 H 0.071 0.929
41 H 0.098 0.902
42 H 0.082 0.918
43 H 0.081 0.919
44 H 0.054 0.946
45 H 0.092 0.908
46 H 0.059 0.941
47 H 0.092 0.908
48 H 0.083 0.917
49 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.131 2.587 12.958 13.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.012 3.988
3 H 0.082 0.918
4 C -0.055 4.055
5 N -0.345 5.345
6 C 0.366 3.634
7 O -0.434 6.434
8 C -0.126 4.126
9 C -0.206 4.206
10 C -0.119 4.119
11 C -0.223 4.223
12 C 0.097 3.903
13 C -0.490 4.490
14 H 0.099 0.901
15 C -0.141 4.141
16 N -0.419 5.419
17 Si 0.729 3.271
18 H -0.183 1.183
19 H -0.199 1.199
20 H -0.195 1.195
21 C -0.158 4.158
22 C -0.030 4.030
23 C 0.068 3.932
24 C -0.216 4.216
25 C -0.009 4.009
26 O -0.304 6.304
27 C -0.011 4.011
28 C -0.176 4.176
29 O -0.288 6.288
30 H 0.081 0.919
31 H 0.097 0.903
32 H 0.084 0.916
33 H 0.142 0.858
34 H 0.093 0.907
35 H 0.116 0.884
36 H 0.114 0.886
37 H 0.115 0.885
38 H 0.093 0.907
39 H 0.157 0.843
40 H 0.089 0.911
41 H 0.116 0.884
42 H 0.100 0.900
43 H 0.099 0.901
44 H 0.073 0.927
45 H 0.110 0.890
46 H 0.077 0.923
47 H 0.110 0.890
48 H 0.102 0.898
49 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -1.473 2.302 13.385 13.662
hybrid contribution -0.727 -0.566 -0.745 1.185
sum -2.201 1.737 12.640 12.947
Atomic orbital electron populations
1.21719 0.92172 1.03304 1.02751 1.22525 0.95417 0.95781 0.85104
0.91838 1.22990 0.79933 1.02526 1.00040 1.47908 1.06983 1.63787
1.15786 1.18926 0.85665 0.75165 0.83681 1.90654 1.14834 1.55373
1.82499 1.19454 0.97837 1.01219 0.94083 1.20354 1.00691 1.02283
0.97311 1.20512 0.96333 0.99394 0.95639 1.21180 0.96865 1.04125
1.00102 1.17555 0.92260 0.90443 0.90042 1.19604 1.04221 1.00416
1.24746 0.90088 1.25909 0.99267 0.96067 0.92894 1.69808 1.35050
1.06639 1.30366 0.86305 0.82346 0.79345 0.79128 1.18263 1.19910
1.19487 1.21896 0.94706 1.02103 0.97143 1.22133 1.00593 0.97096
0.83219 1.21691 0.81890 0.94733 0.94848 1.22711 1.02492 0.96613
0.99756 1.22487 0.99211 0.95133 0.84063 1.87893 1.75565 1.25857
1.41072 1.22498 0.98454 0.82454 0.97678 1.22136 1.02184 1.00127
0.93170 1.87903 1.19767 1.77431 1.43738 0.91851 0.90273 0.91578
0.85771 0.90687 0.88445 0.88615 0.88478 0.90692 0.84342 0.91116
0.88384 0.89968 0.90093 0.92739 0.89032 0.92306 0.88966 0.89806
0.89514
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.69 9.57 37.16 0.36 -1.34 16
2 C 0.07 0.97 3.01 -26.81 -0.08 0.89 16
3 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16
4 C 0.07 1.14 4.15 -3.76 -0.02 1.13 16
5 N -0.61 -11.13 2.63 -173.71 -0.46 -11.58 16
6 C 0.57 12.51 7.43 -12.31 -0.09 12.42 16
7 O -0.55 -13.23 16.22 5.32 0.09 -13.14 16
8 C -0.12 -2.83 5.37 -105.04 -0.56 -3.40 16
9 C -0.19 -4.20 9.60 -38.92 -0.37 -4.57 16
10 C -0.10 -2.17 10.01 -39.72 -0.40 -2.56 16
11 C -0.20 -4.64 9.78 -38.81 -0.38 -5.02 16
12 C 0.10 2.43 5.57 -106.87 -0.60 1.83 16
13 C -0.46 -11.13 9.05 -37.73 -0.34 -11.48 16
14 H 0.08 1.89 7.90 -52.49 -0.41 1.47 16
15 C 0.08 1.76 5.15 -17.35 -0.09 1.67 16
16 N -0.79 -18.98 10.92 55.55 0.61 -18.37 16
17 Si 0.90 17.13 29.59 -169.99 -5.03 12.10 16
18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16
19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16
20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16
21 C -0.14 -3.28 6.04 -38.44 -0.23 -3.51 16
22 C 0.09 1.44 5.32 -3.59 -0.02 1.42 16
23 C 0.11 1.43 0.68 -90.46 -0.06 1.37 16
24 C -0.18 -2.34 4.46 -26.64 -0.12 -2.46 16
25 C 0.07 0.79 6.70 37.22 0.25 1.04 16
26 O -0.39 -4.78 10.76 -35.23 -0.38 -5.16 16
27 C 0.07 0.69 6.70 37.21 0.25 0.94 16
28 C -0.14 -1.49 5.14 -26.64 -0.14 -1.63 16
29 O -0.37 -5.08 8.86 -35.23 -0.31 -5.40 16
30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
33 H 0.12 2.32 4.57 -51.93 -0.24 2.09 16
34 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16
35 H 0.10 2.12 7.95 -52.49 -0.42 1.70 16
36 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16
37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16
38 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16
39 H 0.14 3.24 3.77 -52.49 -0.20 3.04 16
40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
41 H 0.10 1.60 7.06 -51.92 -0.37 1.23 16
42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
43 H 0.08 1.17 6.07 -51.93 -0.32 0.86 16
44 H 0.05 0.63 7.83 -51.93 -0.41 0.23 16
45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
46 H 0.06 0.63 7.83 -51.93 -0.41 0.23 16
47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
48 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
LS Contribution 378.85 15.07 5.71 5.71
Total: -1.00 -27.94 378.85 -9.70 -37.64
By element:
Atomic # 1 Polarization: 18.73 SS G_CDS: -7.28 Total: 11.45 kcal
Atomic # 6 Polarization: -10.61 SS G_CDS: -2.64 Total: -13.25 kcal
Atomic # 7 Polarization: -30.10 SS G_CDS: 0.15 Total: -29.95 kcal
Atomic # 8 Polarization: -23.09 SS G_CDS: -0.61 Total: -23.69 kcal
Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -27.94 -9.70 -37.64 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279288387.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.077 kcal
(2) G-P(sol) polarization free energy of solvation -27.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds