Wall clock time and date at job start Wed Apr 1 2020 03:06:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08993 * 109.51759 * 2 1
4 4 C 1.52850 * 109.58906 * 239.98522 * 2 1 3
5 5 N 1.47152 * 108.63109 * 187.85477 * 4 2 1
6 6 C 1.34780 * 120.98366 * 230.54924 * 5 4 2
7 7 O 1.21547 * 120.00035 * 174.26198 * 6 5 4
8 8 C 1.47884 * 120.00303 * 354.25397 * 6 5 4
9 9 C 1.39917 * 120.02670 * 147.68690 * 8 6 5
10 10 C 1.38332 * 120.35768 * 180.30494 * 9 8 6
11 11 C 1.37756 * 120.41154 * 359.72605 * 10 9 8
12 12 C 1.40747 * 120.03952 * 0.02562 * 11 10 9
13 13 C 1.41440 * 120.17726 * 179.97438 * 12 11 10
14 14 H 1.08001 * 119.99691 * 335.67910 * 13 12 11
15 15 C 1.39934 * 119.99693 * 155.67714 * 13 12 11
16 16 N 1.30823 * 120.00443 * 342.50773 * 15 13 12
17 17 Si 1.86805 * 119.99489 * 162.50482 * 15 13 12
18 18 H 1.48500 * 109.47230 * 0.02562 * 17 15 13
19 19 H 1.48504 * 109.46892 * 120.00207 * 17 15 13
20 20 H 1.48500 * 109.47270 * 239.99687 * 17 15 13
21 21 C 1.38997 * 120.02424 * 327.45875 * 8 6 5
22 22 C 1.47161 * 118.02518 * 50.27406 * 5 4 2
23 23 C 1.53175 * 108.41720 * 309.90162 * 22 5 4
24 24 C 1.53068 * 109.48375 * 291.85541 * 23 22 5
25 25 C 1.53112 * 109.17226 * 183.34103 * 24 23 22
26 26 O 1.42903 * 109.40749 * 57.45852 * 25 24 23
27 27 C 1.42911 * 114.12528 * 298.80584 * 26 25 24
28 28 C 1.53066 * 109.47289 * 172.14823 * 23 22 5
29 29 O 1.42844 * 109.45242 * 52.01451 * 23 22 5
30 30 H 1.08995 * 109.46964 * 299.89724 * 1 2 3
31 31 H 1.08998 * 109.47041 * 59.89953 * 1 2 3
32 32 H 1.09004 * 109.46944 * 179.90198 * 1 2 3
33 33 H 1.08996 * 109.60517 * 68.02352 * 4 2 1
34 34 H 1.08998 * 109.50843 * 307.61953 * 4 2 1
35 35 H 1.07998 * 119.82402 * 0.02562 * 9 8 6
36 36 H 1.08002 * 119.79409 * 179.69748 * 10 9 8
37 37 H 1.07997 * 119.97963 * 180.02562 * 11 10 9
38 38 H 0.97000 * 119.99971 * 180.02562 * 16 15 13
39 39 H 1.08000 * 120.20068 * 359.97289 * 21 8 6
40 40 H 1.09005 * 109.67674 * 69.63794 * 22 5 4
41 41 H 1.09010 * 109.67726 * 190.13626 * 22 5 4
42 42 H 1.09003 * 109.51691 * 303.24833 * 24 23 22
43 43 H 1.08997 * 109.52403 * 63.42872 * 24 23 22
44 44 H 1.09001 * 109.48070 * 297.47698 * 25 24 23
45 45 H 1.08999 * 109.48076 * 177.43998 * 25 24 23
46 46 H 1.08995 * 109.48158 * 301.23236 * 27 26 25
47 47 H 1.09000 * 109.48306 * 181.18680 * 27 26 25
48 48 H 1.09004 * 109.52032 * 296.59281 * 28 23 22
49 49 H 1.09000 * 109.52344 * 56.71311 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0273 0.0000
4 6 2.0425 -0.7203 -1.2469
5 7 3.5015 -0.8752 -1.1341
6 6 4.3186 -0.5016 -2.1387
7 8 5.5241 -0.5396 -1.9877
8 6 3.7486 -0.0455 -3.4248
9 6 4.4150 0.9250 -4.1810
10 6 3.8848 1.3612 -5.3820
11 6 2.6981 0.8414 -5.8500
12 6 2.0161 -0.1393 -5.1056
13 6 0.7971 -0.6745 -5.5832
14 1 0.1883 -0.1033 -6.2684
15 6 0.3800 -1.9440 -5.1679
16 7 1.2390 -2.7715 -4.6304
17 14 -1.4035 -2.4571 -5.3809
18 1 -2.1658 -1.3487 -6.0099
19 1 -1.4722 -3.6598 -6.2494
20 1 -1.9902 -2.7712 -4.0534
21 6 2.5529 -0.5840 -3.8856
22 6 4.0422 -1.4445 0.1106
23 6 3.4302 -0.6889 1.2942
24 6 3.9576 0.7480 1.3103
25 6 3.4073 1.4717 2.5423
26 8 3.7842 0.7568 3.7208
27 6 3.2760 -0.5775 3.7822
28 6 3.8213 -1.3841 2.6006
29 8 2.0076 -0.6759 1.1659
30 1 -0.3633 0.5122 0.8909
31 1 -0.3633 0.5154 -0.8891
32 1 -0.3633 -1.0277 -0.0018
33 1 1.8031 -0.1327 -2.1331
34 1 1.5737 -1.7017 -1.3188
35 1 5.3460 1.3390 -3.8231
36 1 4.4044 2.1142 -5.9560
37 1 2.2907 1.1867 -6.7887
38 1 0.9499 -3.6516 -4.3429
39 1 2.0373 -1.3362 -3.3071
40 1 3.7810 -2.5008 0.1749
41 1 5.1265 -1.3331 0.1245
42 1 5.0468 0.7357 1.3513
43 1 3.6320 1.2657 0.4081
44 1 2.3203 1.5215 2.4793
45 1 3.8159 2.4814 2.5833
46 1 2.1873 -0.5543 3.7350
47 1 3.5897 -1.0434 4.7163
48 1 3.3986 -2.3886 2.6193
49 1 4.9074 -1.4446 2.6700
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000279288387.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:18
Heat of formation + Delta-G solvation = -112.319714 kcal
Electronic energy + Delta-G solvation = -32419.985947 eV
Core-core repulsion = 28311.287346 eV
Total energy + Delta-G solvation = -4108.698601 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-42.19553 -40.59835 -38.97994 -38.70672 -35.93034 -35.56647 -35.13726 -32.28450
-32.06862 -31.86676 -31.49556 -28.62548 -27.55710 -27.15275 -24.94597 -24.67291
-23.58202 -22.75426 -22.46730 -20.82594 -20.50376 -19.03067 -18.20314 -17.78021
-17.53915 -17.28382 -17.03078 -16.64068 -16.57489 -16.23763 -16.07588 -15.80360
-15.43953 -15.24080 -15.07658 -14.58963 -14.53528 -14.27360 -13.81836 -13.68144
-13.54958 -13.49806 -13.25824 -13.09530 -13.02199 -12.86553 -12.79182 -12.66544
-12.54688 -12.42093 -12.19738 -12.06768 -11.96108 -11.68796 -11.44893 -11.39435
-11.10228 -11.00203 -10.76515 -10.56185 -9.70567 -9.45981 -9.33589 -8.67252
-6.38514 0.37680 0.95318 1.42781 1.47145 1.56723 1.78169 1.91423
2.21495 2.47307 2.70295 2.91379 3.39342 3.51141 3.60849 3.61142
3.72300 3.79613 3.93561 3.96450 4.18721 4.21079 4.26288 4.34590
4.40674 4.47883 4.50733 4.55745 4.59640 4.60505 4.72402 4.72792
4.79127 4.80556 4.84075 4.91163 5.00714 5.02748 5.06060 5.12038
5.15120 5.26072 5.29443 5.33701 5.51957 5.79779 5.91228 5.99670
6.09332 6.20735 6.23133 6.24163 6.54979 6.87488 6.89646 7.06017
8.29178
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012660 B = 0.004038 C = 0.003432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2211.146331 B = 6932.176232 C = 8155.400745
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.077 3.923
3 H 0.065 0.935
4 C 0.070 3.930
5 N -0.604 5.604
6 C 0.567 3.433
7 O -0.584 6.584
8 C -0.136 4.136
9 C -0.199 4.199
10 C -0.096 4.096
11 C -0.217 4.217
12 C 0.073 3.927
13 C -0.487 4.487
14 H 0.082 0.918
15 C 0.043 3.957
16 N -0.824 5.824
17 Si 0.974 3.026
18 H -0.256 1.256
19 H -0.273 1.273
20 H -0.259 1.259
21 C -0.145 4.145
22 C 0.088 3.912
23 C 0.111 3.889
24 C -0.175 4.175
25 C 0.073 3.927
26 O -0.396 6.396
27 C 0.065 3.935
28 C -0.135 4.135
29 O -0.365 6.365
30 H 0.083 0.917
31 H 0.081 0.919
32 H 0.065 0.935
33 H 0.105 0.895
34 H 0.068 0.932
35 H 0.102 0.898
36 H 0.128 0.872
37 H 0.110 0.890
38 H 0.289 0.711
39 H 0.137 0.863
40 H 0.079 0.921
41 H 0.088 0.912
42 H 0.074 0.926
43 H 0.063 0.937
44 H 0.057 0.943
45 H 0.104 0.896
46 H 0.058 0.942
47 H 0.117 0.883
48 H 0.097 0.903
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.564 2.503 14.397 15.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.018 3.982
3 H 0.082 0.918
4 C -0.052 4.052
5 N -0.335 5.335
6 C 0.359 3.641
7 O -0.466 6.466
8 C -0.139 4.139
9 C -0.219 4.219
10 C -0.114 4.114
11 C -0.236 4.236
12 C 0.071 3.929
13 C -0.516 4.516
14 H 0.100 0.900
15 C -0.172 4.172
16 N -0.450 5.450
17 Si 0.795 3.205
18 H -0.179 1.179
19 H -0.198 1.198
20 H -0.183 1.183
21 C -0.164 4.164
22 C -0.034 4.034
23 C 0.071 3.929
24 C -0.213 4.213
25 C -0.004 4.004
26 O -0.315 6.315
27 C -0.011 4.011
28 C -0.173 4.173
29 O -0.284 6.284
30 H 0.102 0.898
31 H 0.099 0.901
32 H 0.084 0.916
33 H 0.123 0.877
34 H 0.087 0.913
35 H 0.120 0.880
36 H 0.146 0.854
37 H 0.128 0.872
38 H 0.100 0.900
39 H 0.154 0.846
40 H 0.097 0.903
41 H 0.107 0.893
42 H 0.093 0.907
43 H 0.082 0.918
44 H 0.076 0.924
45 H 0.122 0.878
46 H 0.076 0.924
47 H 0.135 0.865
48 H 0.115 0.885
49 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -2.922 2.222 14.851 15.298
hybrid contribution -0.218 -0.552 -1.211 1.349
sum -3.141 1.669 13.640 14.096
Atomic orbital electron populations
1.21721 0.90280 1.03639 1.03867 1.22485 0.96766 0.95213 0.83694
0.91753 1.22970 0.78993 1.02159 1.01090 1.47927 1.07369 1.62431
1.15812 1.18849 0.85564 0.75498 0.84145 1.90621 1.15818 1.57041
1.83073 1.19711 0.97865 1.01381 0.94929 1.20579 1.00985 1.02477
0.97897 1.20811 0.95836 0.99419 0.95292 1.21417 0.97406 1.04170
1.00642 1.17928 0.93008 0.91343 0.90659 1.19841 1.04654 1.01353
1.25737 0.89961 1.26669 1.03118 0.95467 0.91972 1.69859 1.37015
1.07210 1.30889 0.85261 0.77021 0.78750 0.79444 1.17888 1.19814
1.18283 1.21881 0.95046 1.02342 0.97162 1.22373 1.00273 0.97859
0.82924 1.21754 0.81446 0.94736 0.94960 1.22664 1.02045 0.96652
0.99913 1.22477 0.99295 0.95482 0.83146 1.87889 1.75849 1.26791
1.41001 1.22653 0.98415 0.81618 0.98455 1.22177 1.02767 1.00589
0.91720 1.87920 1.19986 1.77338 1.43199 0.89850 0.90053 0.91615
0.87740 0.91344 0.88032 0.85379 0.87226 0.90020 0.84566 0.90308
0.89323 0.90714 0.91848 0.92450 0.87819 0.92359 0.86489 0.88487
0.88843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.06 9.57 71.98 0.69 -2.37 16
2 C 0.08 2.08 3.01 30.54 0.09 2.17 16
3 H 0.06 1.76 6.21 -2.39 -0.01 1.75 16
4 C 0.07 2.40 4.15 86.20 0.36 2.76 16
5 N -0.60 -22.45 2.63 -821.77 -2.16 -24.61 16
6 C 0.57 25.57 7.43 86.80 0.64 26.21 16
7 O -0.58 -28.70 16.22 -3.86 -0.06 -28.76 16
8 C -0.14 -6.45 5.37 -20.13 -0.11 -6.56 16
9 C -0.20 -9.13 9.60 22.70 0.22 -8.91 16
10 C -0.10 -4.09 10.01 22.18 0.22 -3.87 16
11 C -0.22 -9.97 9.78 22.77 0.22 -9.75 16
12 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16
13 C -0.49 -23.82 9.05 23.47 0.21 -23.61 16
14 H 0.08 3.87 7.90 -2.91 -0.02 3.85 16
15 C 0.04 1.98 5.15 85.25 0.44 2.42 16
16 N -0.82 -39.82 10.92 21.82 0.24 -39.58 16
17 Si 0.97 34.57 29.59 68.60 2.03 36.60 16
18 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16
19 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16
20 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16
21 C -0.14 -7.04 6.04 23.01 0.14 -6.90 16
22 C 0.09 2.73 5.32 86.31 0.46 3.19 16
23 C 0.11 2.82 0.68 -10.69 -0.01 2.81 16
24 C -0.17 -4.49 4.46 30.65 0.14 -4.36 16
25 C 0.07 1.59 6.70 72.02 0.48 2.07 16
26 O -0.40 -8.95 10.76 -148.98 -1.60 -10.55 16
27 C 0.06 1.18 6.70 72.02 0.48 1.66 16
28 C -0.13 -2.62 5.14 30.65 0.16 -2.46 16
29 O -0.36 -9.50 8.86 -148.98 -1.32 -10.82 16
30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.10 4.05 4.57 -2.39 -0.01 4.04 16
34 H 0.07 2.42 7.93 -2.39 -0.02 2.40 16
35 H 0.10 4.49 7.95 -2.91 -0.02 4.47 16
36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16
37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16
38 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16
39 H 0.14 6.59 3.77 -2.91 -0.01 6.58 16
40 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16
41 H 0.09 2.94 7.06 -2.38 -0.02 2.92 16
42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
43 H 0.06 1.85 6.07 -2.39 -0.01 1.83 16
44 H 0.06 1.22 7.83 -2.39 -0.02 1.20 16
45 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16
46 H 0.06 1.08 7.83 -2.39 -0.02 1.07 16
47 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16
48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
Total: -1.00 -60.45 378.85 2.80 -57.65
By element:
Atomic # 1 Polarization: 41.10 SS G_CDS: 0.96 Total: 42.06 kcal
Atomic # 6 Polarization: -26.70 SS G_CDS: 4.72 Total: -21.98 kcal
Atomic # 7 Polarization: -62.27 SS G_CDS: -1.92 Total: -64.19 kcal
Atomic # 8 Polarization: -47.15 SS G_CDS: -2.99 Total: -50.13 kcal
Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal
Total: -60.45 2.80 -57.65 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279288387.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.674 kcal
(2) G-P(sol) polarization free energy of solvation -60.449 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.646 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.44 seconds