Wall clock time and date at job start Wed Apr 1 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.55141 * 2 1 4 4 C 1.53291 * 109.50950 * 120.12671 * 2 1 3 5 5 N 1.47155 * 108.38158 * 172.22715 * 4 2 1 6 6 C 1.34773 * 120.98258 * 129.18856 * 5 4 2 7 7 O 1.21280 * 120.00199 * 179.97438 * 6 5 4 8 8 C 1.50706 * 120.00080 * 0.02562 * 6 5 4 9 9 C 1.50698 * 109.46976 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93143 * 269.72322 * 9 8 6 11 11 C 1.38107 * 120.06854 * 179.72844 * 10 9 8 12 12 C 1.38878 * 119.92790 * 0.55044 * 11 10 9 13 13 O 1.35747 * 120.06822 * 179.74677 * 12 11 10 14 14 C 1.34828 * 117.00202 * 174.43932 * 13 12 11 15 15 H 1.08000 * 120.00051 * 5.05620 * 14 13 12 16 16 C 1.38656 * 120.00098 * 185.05903 * 14 13 12 17 17 N 1.31555 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99810 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47180 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46844 * 120.00001 * 18 16 14 21 21 H 1.48496 * 109.46822 * 239.99748 * 18 16 14 22 22 C 1.38872 * 119.86369 * 359.72383 * 12 11 10 23 23 C 1.38109 * 119.93241 * 0.02562 * 22 12 11 24 24 C 1.47151 * 118.03837 * 309.46201 * 5 4 2 25 25 C 1.53296 * 108.38149 * 50.53513 * 24 5 4 26 26 H 1.09006 * 109.51524 * 67.62509 * 25 24 5 27 27 C 1.52999 * 109.55684 * 187.74796 * 25 24 5 28 28 C 1.52996 * 117.50118 * 248.39348 * 27 25 24 29 29 C 1.52992 * 60.00018 * 252.50765 * 28 27 25 30 30 O 1.42962 * 109.22497 * 307.69725 * 25 24 5 31 31 H 1.08999 * 109.47387 * 299.87166 * 1 2 3 32 32 H 1.09000 * 109.46804 * 59.87211 * 1 2 3 33 33 H 1.09000 * 109.46987 * 179.87355 * 1 2 3 34 34 H 1.09001 * 109.68268 * 52.50595 * 4 2 1 35 35 H 1.08995 * 109.68239 * 291.94754 * 4 2 1 36 36 H 1.08995 * 109.46703 * 300.00044 * 8 6 5 37 37 H 1.09008 * 109.46824 * 59.99795 * 8 6 5 38 38 H 1.08003 * 119.96672 * 0.02562 * 10 9 8 39 39 H 1.08000 * 120.02970 * 180.27328 * 11 10 9 40 40 H 0.97002 * 120.00068 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.03548 * 179.97438 * 22 12 11 42 42 H 1.07995 * 119.96485 * 180.02562 * 23 22 12 43 43 H 1.08998 * 109.68645 * 170.25386 * 24 5 4 44 44 H 1.09000 * 109.68342 * 290.81797 * 24 5 4 45 45 H 1.09000 * 115.54506 * 34.10627 * 27 25 24 46 46 H 1.08996 * 117.50072 * 0.02562 * 28 27 25 47 47 H 1.09008 * 117.49763 * 145.02087 * 28 27 25 48 48 H 1.09003 * 117.50122 * 252.50536 * 29 28 27 49 49 H 1.09002 * 117.50172 * 107.49236 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1336 6 6 4.3197 -0.4987 2.1356 7 8 5.5197 -0.6316 2.0211 8 6 3.7436 0.0875 3.3988 9 6 4.8615 0.4228 4.3522 10 6 5.2937 -0.5196 5.2675 11 6 6.3217 -0.2173 6.1388 12 6 6.9138 1.0384 6.1028 13 8 7.9210 1.3403 6.9614 14 6 8.5284 2.5329 6.7974 15 1 8.1554 3.2326 6.0642 16 6 9.6319 2.8610 7.5702 17 7 10.0860 2.0089 8.4638 18 14 10.4728 4.5135 7.3435 19 1 9.7733 5.2837 6.2839 20 1 10.4264 5.2716 8.6197 21 1 11.8875 4.2986 6.9465 22 6 6.4737 1.9844 5.1864 23 6 5.4488 1.6743 4.3142 24 6 4.0407 -1.4458 -0.1113 25 6 3.4313 -0.6855 -1.2947 26 1 3.8030 0.3392 -1.2995 27 6 3.8212 -1.3765 -2.6029 28 6 4.7799 -0.6338 -3.5358 29 6 3.3015 -0.7667 -3.9063 30 8 2.0076 -0.6764 -1.1655 31 1 -0.3634 0.5118 0.8911 32 1 -0.3633 0.5158 -0.8888 33 1 -0.3633 -1.0277 -0.0023 34 1 1.5758 -1.7079 1.3208 35 1 1.8030 -0.1399 2.1376 36 1 3.1870 0.9932 3.1581 37 1 3.0751 -0.6372 3.8637 38 1 4.8301 -1.4946 5.2978 39 1 6.6617 -0.9552 6.8504 40 1 10.8577 2.2385 9.0047 41 1 6.9319 2.9619 5.1562 42 1 5.1064 2.4095 3.6010 43 1 5.1252 -1.3376 -0.1248 44 1 3.7757 -2.5010 -0.1773 45 1 3.9061 -2.4621 -2.5539 46 1 5.1332 0.3469 -3.2174 47 1 5.4959 -1.2308 -4.1007 48 1 3.0448 -1.4510 -4.7150 49 1 2.6816 0.1268 -3.8319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279412998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:58 Heat of formation + Delta-G solvation = -52.622266 kcal Electronic energy + Delta-G solvation = -29711.455241 eV Core-core repulsion = 25605.345316 eV Total energy + Delta-G solvation = -4106.109925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.69086 -39.24096 -38.55402 -37.24693 -36.46689 -34.83025 -33.09901 -32.42153 -31.41984 -30.12605 -29.28992 -26.83109 -26.55286 -25.20250 -23.91577 -22.69906 -21.95237 -21.76938 -20.96553 -20.70964 -19.13814 -17.95167 -17.32222 -17.11802 -16.94295 -16.37330 -16.05907 -15.45429 -15.41518 -14.75828 -14.57589 -14.50331 -14.17905 -14.01678 -13.68810 -13.54151 -13.35025 -13.30290 -12.90355 -12.75905 -12.67310 -12.45399 -12.35356 -11.94545 -11.88014 -11.79253 -11.51318 -11.48242 -11.25033 -11.13559 -10.83938 -10.76255 -10.72040 -10.57746 -10.55559 -10.39863 -10.33442 -9.68717 -9.29338 -8.79708 -8.71549 -8.12140 -7.13529 -6.41967 -4.00403 2.25183 2.28144 2.68137 2.76991 3.00929 3.14316 3.16118 3.21411 3.67982 3.99365 4.13188 4.36769 4.43235 4.47180 4.60141 4.64313 4.66072 4.75909 4.83318 4.95221 4.96121 5.10577 5.12033 5.17290 5.24732 5.26401 5.31288 5.32841 5.33999 5.45035 5.52049 5.57776 5.60625 5.65011 5.73891 5.75025 5.76873 5.82839 5.87380 6.21688 6.25252 6.44597 6.72879 6.83285 6.94000 7.08249 7.23486 7.28181 7.39636 7.47974 7.86739 8.03483 8.21799 9.03882 9.74636 10.76272 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002088 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.532688 B =13405.148680 C =14172.385391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.063 0.937 4 C 0.079 3.921 5 N -0.627 5.627 6 C 0.513 3.487 7 O -0.515 6.515 8 C -0.078 4.078 9 C -0.171 4.171 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.157 3.843 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.087 3.913 25 C 0.111 3.889 26 H 0.063 0.937 27 C -0.151 4.151 28 C -0.172 4.172 29 C -0.163 4.163 30 O -0.371 6.371 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.710 -4.815 -20.565 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.081 0.919 4 C -0.045 4.045 5 N -0.364 5.364 6 C 0.302 3.698 7 O -0.389 6.389 8 C -0.117 4.117 9 C -0.172 4.172 10 C -0.078 4.078 11 C -0.210 4.210 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.466 4.466 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.251 4.251 23 C -0.075 4.075 24 C -0.035 4.035 25 C 0.053 3.947 26 H 0.080 0.920 27 C -0.169 4.169 28 C -0.209 4.209 29 C -0.200 4.200 30 O -0.290 6.290 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.845 -5.097 -20.353 28.202 hybrid contribution 0.543 0.897 -0.001 1.049 sum -18.302 -4.200 -20.354 27.693 Atomic orbital electron populations 1.21732 0.92066 1.03312 1.02948 1.22487 0.95562 0.95415 0.85125 0.91940 1.22485 0.80553 1.01989 0.99465 1.48283 1.06615 1.64702 1.16775 1.21128 0.86814 0.77362 0.84481 1.90743 1.14790 1.53149 1.80214 1.20434 0.97905 1.01369 0.92032 1.18623 1.02045 0.95760 1.00812 1.20395 0.95644 0.97237 0.94475 1.20156 1.00960 0.95628 1.04266 1.19377 0.88791 0.92745 0.88769 1.83976 1.40683 1.36993 1.46519 1.21375 1.11229 0.91493 1.22546 0.89043 1.25292 0.96004 0.99657 0.95648 1.70051 1.23781 1.35015 1.20969 0.85647 0.79160 0.80120 0.78490 1.19122 1.20164 1.20150 1.21101 1.01966 1.01125 1.00935 1.20491 0.95042 0.95175 0.96757 1.22192 1.01086 0.97401 0.82864 1.21943 0.81389 0.98359 0.92992 0.91953 1.22088 1.05530 0.99366 0.89935 1.23044 0.93239 1.02047 1.02541 1.22826 0.96472 1.03223 0.97466 1.87971 1.20617 1.77388 1.43019 0.90602 0.91439 0.91471 0.90486 0.88478 0.89104 0.88948 0.87412 0.86518 0.92111 0.85576 0.87928 0.87953 0.90933 0.86982 0.88543 0.88161 0.88604 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.57 37.16 0.36 -0.40 16 2 C 0.07 0.55 3.40 -26.58 -0.09 0.46 16 3 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.08 0.61 5.83 -3.53 -0.02 0.59 16 5 N -0.63 -7.05 3.02 -172.28 -0.52 -7.57 16 6 C 0.51 7.45 7.70 -10.98 -0.08 7.37 16 7 O -0.52 -9.96 15.50 5.56 0.09 -9.87 16 8 C -0.08 -1.00 4.20 -29.03 -0.12 -1.12 16 9 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 10 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 11 C -0.19 -4.23 9.99 -39.39 -0.39 -4.62 16 12 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 13 O -0.18 -5.23 9.76 0.06 0.00 -5.23 16 14 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 15 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 18 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 23 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 24 C 0.09 0.94 5.92 -3.53 -0.02 0.92 16 25 C 0.11 1.04 2.97 -26.58 -0.08 0.96 16 26 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 27 C -0.15 -1.20 5.40 -90.63 -0.49 -1.69 16 28 C -0.17 -1.23 10.18 -26.74 -0.27 -1.50 16 29 C -0.16 -1.15 10.16 -26.74 -0.27 -1.43 16 30 O -0.37 -3.48 9.94 -35.23 -0.35 -3.83 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.60 6.05 -51.93 -0.31 0.28 16 36 H 0.09 0.94 7.60 -51.93 -0.39 0.55 16 37 H 0.09 0.96 7.95 -51.92 -0.41 0.54 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.28 7.08 -51.93 -0.37 0.91 16 44 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 45 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 47 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -34.75 401.96 -9.64 -44.40 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.52 Total: 3.90 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.14 Total: -18.77 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.24 Total: -32.58 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.26 Total: -18.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.75 -9.64 -44.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279412998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.224 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds