Wall clock time and date at job start Wed Apr 1 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.55141 * 2 1 4 4 C 1.53291 * 109.50950 * 120.12671 * 2 1 3 5 5 N 1.47155 * 108.38158 * 172.22715 * 4 2 1 6 6 C 1.34773 * 120.98258 * 129.18856 * 5 4 2 7 7 O 1.21280 * 120.00199 * 179.97438 * 6 5 4 8 8 C 1.50706 * 120.00080 * 0.02562 * 6 5 4 9 9 C 1.50698 * 109.46976 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93143 * 269.72322 * 9 8 6 11 11 C 1.38107 * 120.06854 * 179.72844 * 10 9 8 12 12 C 1.38878 * 119.92790 * 0.55044 * 11 10 9 13 13 O 1.35747 * 120.06822 * 179.74677 * 12 11 10 14 14 C 1.34828 * 117.00202 * 174.43932 * 13 12 11 15 15 H 1.08000 * 120.00051 * 5.05620 * 14 13 12 16 16 C 1.38656 * 120.00098 * 185.05903 * 14 13 12 17 17 N 1.31555 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99810 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47180 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46844 * 120.00001 * 18 16 14 21 21 H 1.48496 * 109.46822 * 239.99748 * 18 16 14 22 22 C 1.38872 * 119.86369 * 359.72383 * 12 11 10 23 23 C 1.38109 * 119.93241 * 0.02562 * 22 12 11 24 24 C 1.47151 * 118.03837 * 309.46201 * 5 4 2 25 25 C 1.53296 * 108.38149 * 50.53513 * 24 5 4 26 26 H 1.09006 * 109.51524 * 67.62509 * 25 24 5 27 27 C 1.52999 * 109.55684 * 187.74796 * 25 24 5 28 28 C 1.52996 * 117.50118 * 248.39348 * 27 25 24 29 29 C 1.52992 * 60.00018 * 252.50765 * 28 27 25 30 30 O 1.42962 * 109.22497 * 307.69725 * 25 24 5 31 31 H 1.08999 * 109.47387 * 299.87166 * 1 2 3 32 32 H 1.09000 * 109.46804 * 59.87211 * 1 2 3 33 33 H 1.09000 * 109.46987 * 179.87355 * 1 2 3 34 34 H 1.09001 * 109.68268 * 52.50595 * 4 2 1 35 35 H 1.08995 * 109.68239 * 291.94754 * 4 2 1 36 36 H 1.08995 * 109.46703 * 300.00044 * 8 6 5 37 37 H 1.09008 * 109.46824 * 59.99795 * 8 6 5 38 38 H 1.08003 * 119.96672 * 0.02562 * 10 9 8 39 39 H 1.08000 * 120.02970 * 180.27328 * 11 10 9 40 40 H 0.97002 * 120.00068 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.03548 * 179.97438 * 22 12 11 42 42 H 1.07995 * 119.96485 * 180.02562 * 23 22 12 43 43 H 1.08998 * 109.68645 * 170.25386 * 24 5 4 44 44 H 1.09000 * 109.68342 * 290.81797 * 24 5 4 45 45 H 1.09000 * 115.54506 * 34.10627 * 27 25 24 46 46 H 1.08996 * 117.50072 * 0.02562 * 28 27 25 47 47 H 1.09008 * 117.49763 * 145.02087 * 28 27 25 48 48 H 1.09003 * 117.50122 * 252.50536 * 29 28 27 49 49 H 1.09002 * 117.50172 * 107.49236 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1336 6 6 4.3197 -0.4987 2.1356 7 8 5.5197 -0.6316 2.0211 8 6 3.7436 0.0875 3.3988 9 6 4.8615 0.4228 4.3522 10 6 5.2937 -0.5196 5.2675 11 6 6.3217 -0.2173 6.1388 12 6 6.9138 1.0384 6.1028 13 8 7.9210 1.3403 6.9614 14 6 8.5284 2.5329 6.7974 15 1 8.1554 3.2326 6.0642 16 6 9.6319 2.8610 7.5702 17 7 10.0860 2.0089 8.4638 18 14 10.4728 4.5135 7.3435 19 1 9.7733 5.2837 6.2839 20 1 10.4264 5.2716 8.6197 21 1 11.8875 4.2986 6.9465 22 6 6.4737 1.9844 5.1864 23 6 5.4488 1.6743 4.3142 24 6 4.0407 -1.4458 -0.1113 25 6 3.4313 -0.6855 -1.2947 26 1 3.8030 0.3392 -1.2995 27 6 3.8212 -1.3765 -2.6029 28 6 4.7799 -0.6338 -3.5358 29 6 3.3015 -0.7667 -3.9063 30 8 2.0076 -0.6764 -1.1655 31 1 -0.3634 0.5118 0.8911 32 1 -0.3633 0.5158 -0.8888 33 1 -0.3633 -1.0277 -0.0023 34 1 1.5758 -1.7079 1.3208 35 1 1.8030 -0.1399 2.1376 36 1 3.1870 0.9932 3.1581 37 1 3.0751 -0.6372 3.8637 38 1 4.8301 -1.4946 5.2978 39 1 6.6617 -0.9552 6.8504 40 1 10.8577 2.2385 9.0047 41 1 6.9319 2.9619 5.1562 42 1 5.1064 2.4095 3.6010 43 1 5.1252 -1.3376 -0.1248 44 1 3.7757 -2.5010 -0.1773 45 1 3.9061 -2.4621 -2.5539 46 1 5.1332 0.3469 -3.2174 47 1 5.4959 -1.2308 -4.1007 48 1 3.0448 -1.4510 -4.7150 49 1 2.6816 0.1268 -3.8319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279412998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:56 Heat of formation + Delta-G solvation = -73.993676 kcal Electronic energy + Delta-G solvation = -29712.381975 eV Core-core repulsion = 25605.345316 eV Total energy + Delta-G solvation = -4107.036659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61017 -40.75461 -39.77255 -38.20948 -37.84332 -35.76263 -34.42477 -33.72263 -32.81815 -31.79481 -30.17729 -28.18878 -27.33758 -27.02051 -24.82730 -23.65355 -23.28040 -22.56834 -22.12761 -21.60673 -20.17022 -19.83599 -18.84610 -18.28190 -17.77336 -17.30243 -16.90697 -16.55194 -16.36126 -16.08575 -16.03277 -15.90277 -15.52938 -15.27527 -15.04776 -14.87961 -14.52483 -14.39816 -14.10316 -13.97928 -13.60858 -13.56716 -13.11962 -13.06191 -12.99048 -12.81706 -12.53144 -12.47005 -12.42402 -12.29990 -12.22618 -12.10759 -12.07879 -11.80532 -11.35281 -11.26792 -11.19051 -11.05077 -10.88579 -10.72019 -9.77887 -9.58898 -8.91628 -8.48384 -6.16493 0.59983 0.64654 1.33121 1.41722 1.51988 1.60541 1.85163 2.16617 2.38161 2.81081 3.08743 3.13305 3.47489 3.51026 3.67879 3.77152 3.82558 3.90501 3.98338 4.01975 4.06958 4.10532 4.16422 4.18234 4.30553 4.39138 4.42662 4.50780 4.54539 4.60177 4.63216 4.72089 4.77195 4.78466 4.84095 4.95426 5.01006 5.06756 5.06978 5.13472 5.19006 5.24166 5.28331 5.33816 5.38439 5.55294 5.70344 5.75570 6.01976 6.18166 6.18899 6.32956 6.96211 7.15729 7.77463 8.75286 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002088 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.532688 B =13405.148680 C =14172.385391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.060 0.940 4 C 0.073 3.927 5 N -0.620 5.620 6 C 0.512 3.488 7 O -0.577 6.577 8 C -0.076 4.076 9 C -0.146 4.146 10 C -0.057 4.057 11 C -0.206 4.206 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.252 1.252 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.243 4.243 23 C -0.060 4.060 24 C 0.086 3.914 25 C 0.120 3.880 26 H 0.051 0.949 27 C -0.162 4.162 28 C -0.173 4.173 29 C -0.156 4.156 30 O -0.379 6.379 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.271 -4.496 -22.880 32.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 H 0.078 0.922 4 C -0.049 4.049 5 N -0.354 5.354 6 C 0.302 3.698 7 O -0.455 6.455 8 C -0.115 4.115 9 C -0.147 4.147 10 C -0.075 4.075 11 C -0.225 4.225 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.263 4.263 23 C -0.078 4.078 24 C -0.037 4.037 25 C 0.062 3.938 26 H 0.069 0.931 27 C -0.180 4.180 28 C -0.210 4.210 29 C -0.193 4.193 30 O -0.299 6.299 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.109 0.891 47 H 0.129 0.871 48 H 0.127 0.873 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.514 -4.797 -22.722 32.345 hybrid contribution 1.312 0.612 0.483 1.526 sum -21.202 -4.185 -22.239 31.010 Atomic orbital electron populations 1.21739 0.90120 1.03743 1.03921 1.22685 0.96999 0.95013 0.84389 0.92246 1.22821 0.78007 1.03392 1.00669 1.48312 1.08028 1.63096 1.15964 1.21315 0.86184 0.76928 0.85340 1.90745 1.17321 1.55998 1.81459 1.20571 0.96488 1.04224 0.90174 1.19220 1.01509 0.94271 0.99701 1.20867 0.94248 0.99132 0.93247 1.20442 1.02071 0.94715 1.05267 1.19932 0.89146 0.94680 0.89999 1.83937 1.43065 1.37804 1.49184 1.21855 1.11969 0.91940 1.23167 0.88269 1.26624 0.96399 1.04181 0.95017 1.70194 1.25051 1.37832 1.22868 0.84513 0.77794 0.74632 0.79134 1.17555 1.18981 1.19426 1.21220 1.03187 1.00433 1.01417 1.20910 0.93787 0.96883 0.96179 1.22210 0.99922 0.98170 0.83380 1.21794 0.81531 0.97517 0.92980 0.93149 1.22131 1.06455 0.99663 0.89780 1.23102 0.93668 1.01866 1.02357 1.22871 0.96173 1.03133 0.97136 1.87980 1.20224 1.77634 1.44069 0.88450 0.91714 0.91281 0.89102 0.85875 0.85315 0.85005 0.83612 0.86947 0.91824 0.86486 0.84520 0.90291 0.90054 0.86455 0.89094 0.87121 0.87320 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.57 71.98 0.69 -0.23 16 2 C 0.07 0.78 3.40 30.69 0.10 0.88 16 3 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 4 C 0.07 0.80 5.83 86.35 0.50 1.31 16 5 N -0.62 -11.98 3.02 -817.36 -2.47 -14.45 16 6 C 0.51 13.25 7.70 87.66 0.68 13.93 16 7 O -0.58 -21.62 15.50 -3.03 -0.05 -21.67 16 8 C -0.08 -1.54 4.20 29.10 0.12 -1.42 16 9 C -0.15 -4.70 4.38 -19.84 -0.09 -4.79 16 10 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 11 C -0.21 -9.34 9.99 22.39 0.22 -9.12 16 12 C 0.11 5.94 6.65 22.58 0.15 6.09 16 13 O -0.23 -14.67 9.76 -22.69 -0.22 -14.89 16 14 C -0.41 -25.04 9.49 67.92 0.64 -24.39 16 15 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 16 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 17 N -0.92 -58.13 13.67 21.61 0.30 -57.83 16 18 Si 1.02 44.27 29.55 68.60 2.03 46.30 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.24 -11.27 9.17 22.39 0.21 -11.07 16 23 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 24 C 0.09 1.72 5.92 86.35 0.51 2.23 16 25 C 0.12 2.07 2.97 30.69 0.09 2.16 16 26 H 0.05 0.98 7.90 -2.38 -0.02 0.96 16 27 C -0.16 -2.37 5.40 -10.80 -0.06 -2.43 16 28 C -0.17 -2.28 10.18 30.59 0.31 -1.97 16 29 C -0.16 -1.95 10.16 30.59 0.31 -1.64 16 30 O -0.38 -6.19 9.94 -148.98 -1.48 -7.67 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 0.73 6.05 -2.39 -0.01 0.71 16 36 H 0.13 1.78 7.60 -2.39 -0.02 1.76 16 37 H 0.13 1.79 7.95 -2.38 -0.02 1.77 16 38 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.08 1.98 7.08 -2.39 -0.02 1.96 16 44 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 45 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 46 H 0.09 1.29 8.05 -2.39 -0.02 1.27 16 47 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -83.37 401.96 4.35 -79.02 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.95 Total: 26.42 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 5.29 Total: -35.24 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.17 Total: -72.28 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.75 Total: -44.23 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -83.37 4.35 -79.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279412998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.030 kcal (2) G-P(sol) polarization free energy of solvation -83.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds