Wall clock time and date at job start Wed Apr 1 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.44261 * 2 1 4 4 O 1.44552 * 110.39366 * 122.36277 * 2 1 3 5 5 C 1.44480 * 105.37031 * 158.77850 * 4 2 1 6 6 C 1.54613 * 104.82212 * 319.84894 * 5 4 2 7 7 C 1.53927 * 110.38906 * 237.64494 * 2 1 3 8 8 C 1.53089 * 110.13856 * 336.12898 * 7 2 1 9 9 N 1.47287 * 108.14371 * 173.51709 * 8 7 2 10 10 C 1.34779 * 121.04920 * 130.37583 * 9 8 7 11 11 O 1.21577 * 119.99979 * 3.06167 * 10 9 8 12 12 C 1.47642 * 119.99667 * 183.06555 * 10 9 8 13 13 C 1.40015 * 119.89807 * 313.85750 * 12 10 9 14 14 C 1.36310 * 120.10904 * 180.02562 * 13 12 10 15 15 C 1.40891 * 119.89074 * 359.96781 * 14 13 12 16 16 C 1.41114 * 120.10446 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99738 * 333.64465 * 16 15 14 18 18 C 1.40227 * 119.99907 * 153.64277 * 16 15 14 19 19 N 1.30644 * 120.00145 * 341.12893 * 18 16 15 20 20 Si 1.86800 * 119.99647 * 161.13375 * 18 16 15 21 21 H 1.48497 * 109.47432 * 84.91496 * 20 18 16 22 22 H 1.48498 * 109.47176 * 324.90954 * 20 18 16 23 23 H 1.48496 * 109.46749 * 204.91348 * 20 18 16 24 24 C 1.40884 * 119.79434 * 0.26291 * 15 14 13 25 25 C 1.36320 * 119.88996 * 359.47872 * 24 15 14 26 26 C 1.47162 * 117.89433 * 310.10101 * 9 8 7 27 27 C 1.53275 * 108.53728 * 51.30864 * 26 9 8 28 28 H 1.09003 * 109.51279 * 67.11630 * 27 26 9 29 29 C 1.53003 * 109.51199 * 187.21211 * 27 26 9 30 30 O 1.42218 * 110.48145 * 98.81049 * 7 2 1 31 31 H 1.08998 * 109.47028 * 182.35515 * 1 2 3 32 32 H 1.09002 * 109.46993 * 302.35598 * 1 2 3 33 33 H 1.09001 * 109.47032 * 62.35385 * 1 2 3 34 34 H 1.09003 * 110.36937 * 201.01265 * 5 4 2 35 35 H 1.09002 * 110.36538 * 78.68677 * 5 4 2 36 36 H 1.08995 * 110.54670 * 265.30457 * 6 5 4 37 37 H 1.08999 * 110.66934 * 142.55249 * 6 5 4 38 38 H 1.09005 * 109.85435 * 53.84403 * 8 7 2 39 39 H 1.08994 * 109.74991 * 293.13601 * 8 7 2 40 40 H 1.07996 * 119.94502 * 359.97438 * 13 12 10 41 41 H 1.07995 * 120.05796 * 179.97438 * 14 13 12 42 42 H 0.96995 * 120.00153 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.05682 * 179.74248 * 24 15 14 44 44 H 1.08000 * 119.94533 * 180.23687 * 25 24 15 45 45 H 1.09000 * 109.62448 * 171.02354 * 26 9 8 46 46 H 1.09001 * 109.63137 * 291.58964 * 26 9 8 47 47 H 1.08995 * 109.47018 * 60.00191 * 29 27 26 48 48 H 1.08997 * 109.46968 * 180.02562 * 29 27 26 49 49 H 1.09000 * 109.46989 * 299.99605 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7253 1.1445 5 6 3.3844 -1.1011 0.7955 6 6 3.3079 -1.5152 -0.6922 7 6 2.0662 -0.7722 -1.2188 8 6 1.0179 -1.7729 -1.7117 9 7 1.5091 -2.3723 -2.9642 10 6 1.5135 -3.7085 -3.1406 11 8 1.0564 -4.4366 -2.2809 12 6 2.0736 -4.2879 -4.3777 13 6 1.7317 -3.7422 -5.6210 14 6 2.2458 -4.2741 -6.7659 15 6 3.1231 -5.3744 -6.6967 16 6 3.6576 -5.9289 -7.8791 17 1 3.1195 -5.8349 -8.8108 18 6 4.8873 -6.6020 -7.8444 19 7 5.7080 -6.4120 -6.8458 20 14 5.3518 -7.7702 -9.2260 21 1 5.9637 -7.0016 -10.3395 22 1 4.1351 -8.4669 -9.7153 23 1 6.3260 -8.7709 -8.7214 24 6 3.4604 -5.9231 -5.4437 25 6 2.9454 -5.3810 -4.3039 26 6 1.9892 -1.4657 -4.0194 27 6 3.0090 -0.5001 -3.4053 28 1 3.9002 -1.0527 -3.1077 29 6 3.3888 0.5653 -4.4357 30 8 2.4309 0.1284 -2.2574 31 1 -0.3633 -1.0268 0.0422 32 1 -0.3633 0.5500 0.8681 33 1 -0.3633 0.4769 -0.9103 34 1 3.7144 -1.9412 1.4066 35 1 4.0581 -0.2532 0.9192 36 1 3.1755 -2.5933 -0.7829 37 1 4.2015 -1.1941 -1.2274 38 1 0.0740 -1.2598 -1.8959 39 1 0.8727 -2.5525 -0.9639 40 1 1.0589 -2.8991 -5.6730 41 1 1.9812 -3.8528 -7.7244 42 1 6.5587 -6.8773 -6.8220 43 1 4.1292 -6.7691 -5.3860 44 1 3.2063 -5.7986 -3.3426 45 1 2.4641 -2.0447 -4.8114 46 1 1.1504 -0.9016 -4.4271 47 1 2.4975 1.1186 -4.7315 48 1 4.1143 1.2512 -3.9985 49 1 3.8255 0.0847 -5.3112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279428046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:35 Heat of formation + Delta-G solvation = -111.956582 kcal Electronic energy + Delta-G solvation = -31691.815536 eV Core-core repulsion = 27583.132682 eV Total energy + Delta-G solvation = -4108.682854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.23417 -40.61821 -39.08958 -38.75046 -35.97587 -35.58897 -34.53756 -32.67433 -32.09531 -31.60664 -31.43220 -28.67535 -27.65621 -26.95727 -25.89141 -24.01555 -23.43072 -22.89576 -22.09676 -21.07836 -20.21766 -19.36794 -18.44976 -18.30376 -17.40733 -17.16998 -17.11387 -16.65023 -16.46357 -16.20743 -15.87410 -15.74325 -15.36939 -15.04606 -14.61790 -14.56058 -14.43475 -14.08989 -13.91528 -13.74482 -13.64580 -13.46741 -13.30840 -13.21759 -13.05941 -12.98901 -12.83543 -12.65336 -12.53680 -12.38323 -12.32148 -12.07824 -11.91882 -11.81412 -11.67321 -11.39957 -11.14437 -11.09663 -10.86421 -10.68708 -9.65127 -9.55238 -9.34751 -8.78775 -6.46304 0.52730 1.09109 1.37832 1.42633 1.53319 1.78245 1.97827 2.16353 2.34783 2.66983 2.79071 3.30556 3.43614 3.61729 3.64243 3.73683 3.85044 3.94276 4.02548 4.07360 4.20363 4.26963 4.30700 4.33110 4.34281 4.45221 4.52674 4.55750 4.56379 4.69667 4.76153 4.79270 4.84899 4.89609 4.94388 4.97034 5.00976 5.02455 5.15167 5.20210 5.23881 5.29036 5.41691 5.57561 5.63259 5.74508 5.93463 5.99374 6.11789 6.19062 6.35587 6.54859 6.78341 6.88195 7.19601 8.17784 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002809 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.196948 B = 9966.141651 C =10180.057098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.092 3.908 3 H 0.096 0.904 4 O -0.382 6.382 5 C 0.052 3.948 6 C -0.180 4.180 7 C 0.083 3.917 8 C 0.096 3.904 9 N -0.612 5.612 10 C 0.578 3.422 11 O -0.597 6.597 12 C -0.282 4.282 13 C -0.043 4.043 14 C -0.238 4.238 15 C 0.103 3.897 16 C -0.478 4.478 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.804 5.804 20 Si 0.982 3.018 21 H -0.256 1.256 22 H -0.258 1.258 23 H -0.269 1.269 24 C -0.194 4.194 25 C -0.055 4.055 26 C 0.067 3.933 27 C 0.073 3.927 28 H 0.053 0.947 29 C -0.136 4.136 30 O -0.359 6.359 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.294 0.706 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 14.807 6.090 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.114 0.886 4 O -0.301 6.301 5 C -0.024 4.024 6 C -0.218 4.218 7 C 0.042 3.958 8 C -0.026 4.026 9 N -0.344 5.344 10 C 0.372 3.628 11 O -0.480 6.480 12 C -0.286 4.286 13 C -0.061 4.061 14 C -0.257 4.257 15 C 0.100 3.900 16 C -0.506 4.506 17 H 0.108 0.892 18 C -0.180 4.180 19 N -0.428 5.428 20 Si 0.802 3.198 21 H -0.180 1.180 22 H -0.182 1.182 23 H -0.193 1.193 24 C -0.213 4.213 25 C -0.074 4.074 26 C -0.055 4.055 27 C 0.015 3.985 28 H 0.071 0.929 29 C -0.193 4.193 30 O -0.278 6.278 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.445 14.538 6.849 16.255 hybrid contribution 0.722 -1.340 -0.535 1.613 sum -1.722 13.198 6.313 14.732 Atomic orbital electron populations 1.21949 0.91323 1.03185 1.04179 1.22817 0.96528 0.95623 0.81604 0.88627 1.89185 1.28488 1.74757 1.37708 1.23455 0.84497 1.01062 0.93429 1.23445 0.99280 1.00595 0.98510 1.22768 0.93507 0.90142 0.89362 1.22431 0.97477 0.96171 0.86561 1.48140 1.63937 1.05128 1.17200 1.18656 0.76466 0.81387 0.86291 1.90636 1.49454 1.60801 1.47077 1.18993 1.11978 1.05313 0.92320 1.20615 0.97037 0.97538 0.90947 1.20925 1.07089 1.00113 0.97583 1.18056 0.89414 0.89318 0.93179 1.20056 1.03964 1.30409 0.96139 0.89210 1.26896 0.95301 0.96345 0.99450 1.69778 1.07983 1.33702 1.31324 0.85200 0.78964 0.77788 0.77815 1.18026 1.18166 1.19320 1.20810 1.05499 1.02619 0.92396 1.20383 0.95657 0.94454 0.96949 1.22974 0.99111 0.92248 0.91129 1.22636 0.94336 0.94837 0.86682 0.92918 1.21716 1.03078 0.97640 0.96887 1.87804 1.81078 1.32758 1.26200 0.92250 0.89996 0.89255 0.88135 0.89860 0.92618 0.89260 0.88773 0.90263 0.85454 0.86536 0.89487 0.88248 0.89552 0.87647 0.88887 0.90357 0.90654 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.29 71.98 0.60 -2.06 16 2 C 0.09 1.96 3.59 30.91 0.11 2.07 16 3 H 0.10 1.81 8.08 -2.38 -0.02 1.79 16 4 O -0.38 -9.35 11.35 -148.98 -1.69 -11.04 16 5 C 0.05 1.12 7.65 72.53 0.55 1.68 16 6 C -0.18 -4.68 5.79 31.48 0.18 -4.50 16 7 C 0.08 2.07 0.97 -10.12 -0.01 2.06 16 8 C 0.10 2.78 3.91 86.26 0.34 3.12 16 9 N -0.61 -20.40 2.90 -821.05 -2.38 -22.78 16 10 C 0.58 24.62 7.28 86.73 0.63 25.25 16 11 O -0.60 -29.25 16.49 -3.96 -0.07 -29.31 16 12 C -0.28 -12.65 5.16 -19.93 -0.10 -12.75 16 13 C -0.04 -1.74 7.27 22.25 0.16 -1.58 16 14 C -0.24 -10.52 9.73 22.47 0.22 -10.31 16 15 C 0.10 5.21 5.55 -21.28 -0.12 5.10 16 16 C -0.48 -23.59 9.03 23.46 0.21 -23.38 16 17 H 0.09 4.17 7.92 -2.91 -0.02 4.14 16 18 C 0.04 1.80 5.09 85.35 0.43 2.24 16 19 N -0.80 -39.23 11.15 21.87 0.24 -38.99 16 20 Si 0.98 34.98 29.60 68.60 2.03 37.01 16 21 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 22 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 23 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 24 C -0.19 -10.04 8.62 22.47 0.19 -9.84 16 25 C -0.06 -2.72 9.62 22.25 0.21 -2.50 16 26 C 0.07 1.85 4.58 86.35 0.40 2.25 16 27 C 0.07 1.76 3.11 30.69 0.10 1.85 16 28 H 0.05 1.43 6.49 -2.39 -0.02 1.41 16 29 C -0.14 -2.43 9.57 71.98 0.69 -1.74 16 30 O -0.36 -8.58 9.84 -148.98 -1.47 -10.05 16 31 H 0.06 1.20 6.74 -2.39 -0.02 1.18 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.35 7.69 -2.39 -0.02 1.33 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.78 7.68 -2.39 -0.02 1.76 16 37 H 0.09 2.22 6.61 -2.39 -0.02 2.21 16 38 H 0.09 2.37 6.23 -2.38 -0.01 2.35 16 39 H 0.08 2.69 6.92 -2.39 -0.02 2.67 16 40 H 0.13 4.26 6.67 -2.91 -0.02 4.24 16 41 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 42 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 43 H 0.10 5.37 6.35 -2.91 -0.02 5.35 16 44 H 0.09 4.23 8.06 -2.91 -0.02 4.21 16 45 H 0.11 3.26 4.54 -2.39 -0.01 3.25 16 46 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -62.26 380.78 2.43 -59.83 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: 0.96 Total: 38.38 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 4.80 Total: -23.05 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -2.13 Total: -61.77 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -3.22 Total: -50.40 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Total: -62.26 2.43 -59.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279428046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.128 kcal (2) G-P(sol) polarization free energy of solvation -62.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds