Wall clock time and date at job start Wed Apr 1 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.43622 * 2 1 4 4 O 1.44551 * 110.39253 * 122.36075 * 2 1 3 5 5 C 1.44470 * 105.37300 * 158.77694 * 4 2 1 6 6 C 1.54612 * 104.82296 * 319.84833 * 5 4 2 7 7 C 1.53920 * 110.39112 * 237.64434 * 2 1 3 8 8 C 1.52645 * 110.21240 * 335.99167 * 7 2 1 9 9 N 1.47289 * 108.38407 * 173.35030 * 8 7 2 10 10 C 1.34776 * 121.05329 * 130.41903 * 9 8 7 11 11 O 1.21549 * 119.99959 * 3.62355 * 10 9 8 12 12 C 1.47891 * 120.00148 * 183.63343 * 10 9 8 13 13 C 1.39919 * 120.02313 * 315.92263 * 12 10 9 14 14 C 1.38330 * 120.35796 * 180.02562 * 13 12 10 15 15 C 1.37753 * 120.40949 * 0.02562 * 14 13 12 16 16 C 1.40748 * 120.04000 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17564 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99666 * 330.97417 * 17 16 15 19 19 C 1.39939 * 120.00192 * 150.97857 * 17 16 15 20 20 N 1.30825 * 119.99929 * 334.96341 * 19 17 16 21 21 Si 1.86798 * 120.00130 * 154.96501 * 19 17 16 22 22 H 1.48509 * 109.47028 * 89.99826 * 21 19 17 23 23 H 1.48507 * 109.47145 * 330.00120 * 21 19 17 24 24 H 1.48497 * 109.47074 * 210.00032 * 21 19 17 25 25 C 1.38998 * 120.02333 * 136.22100 * 12 10 9 26 26 C 1.47163 * 117.89608 * 310.68947 * 9 8 7 27 27 C 1.52866 * 108.75715 * 50.73938 * 26 9 8 28 28 H 1.08994 * 109.41172 * 67.31734 * 27 26 9 29 29 C 1.53001 * 109.58195 * 187.40458 * 27 26 9 30 30 O 1.42214 * 110.48485 * 98.82359 * 7 2 1 31 31 H 1.08998 * 109.47252 * 182.35278 * 1 2 3 32 32 H 1.09000 * 109.47174 * 302.35768 * 1 2 3 33 33 H 1.09000 * 109.46838 * 62.35912 * 1 2 3 34 34 H 1.09000 * 110.37346 * 201.01117 * 5 4 2 35 35 H 1.09004 * 110.45827 * 78.72859 * 5 4 2 36 36 H 1.08991 * 110.54515 * 265.30593 * 6 5 4 37 37 H 1.08996 * 110.54854 * 142.49321 * 6 5 4 38 38 H 1.08998 * 109.68413 * 53.62940 * 8 7 2 39 39 H 1.09005 * 109.68254 * 293.07043 * 8 7 2 40 40 H 1.08004 * 119.81899 * 359.97438 * 13 12 10 41 41 H 1.08000 * 119.79384 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.97524 * 179.97438 * 15 14 13 43 43 H 0.97008 * 119.99548 * 354.18687 * 20 19 17 44 44 H 1.07995 * 120.20487 * 359.97438 * 25 12 10 45 45 H 1.08999 * 109.62672 * 170.50900 * 26 9 8 46 46 H 1.09000 * 109.62835 * 291.08326 * 26 9 8 47 47 H 1.09005 * 109.47018 * 179.87486 * 29 27 26 48 48 H 1.08996 * 109.47089 * 299.87376 * 29 27 26 49 49 H 1.09001 * 109.47419 * 59.87617 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 8 2.0337 -0.7252 1.1445 5 6 3.3843 -1.1011 0.7956 6 6 3.3079 -1.5153 -0.6920 7 6 2.0663 -0.7721 -1.2188 8 6 1.0236 -1.7730 -1.7096 9 7 1.5091 -2.3720 -2.9645 10 6 1.5138 -3.7081 -3.1410 11 8 1.0523 -4.4359 -2.2838 12 6 2.0806 -4.2888 -4.3774 13 6 1.7814 -3.7186 -5.6196 14 6 2.3073 -4.2564 -6.7806 15 6 3.1309 -5.3594 -6.7274 16 6 3.4430 -5.9465 -5.4869 17 6 4.2887 -7.0787 -5.4289 18 1 4.3247 -7.7688 -6.2589 19 6 5.0787 -7.3048 -4.2961 20 7 5.4288 -6.3021 -3.5322 21 14 5.6333 -9.0381 -3.8749 22 1 6.9357 -9.3147 -4.5327 23 1 4.6200 -10.0122 -4.3541 24 1 5.7850 -9.1653 -2.4032 25 6 2.9058 -5.4050 -4.3068 26 6 1.9948 -1.4656 -4.0173 27 6 3.0096 -0.5002 -3.4051 28 1 3.9010 -1.0523 -3.1075 29 6 3.3889 0.5660 -4.4348 30 8 2.4313 0.1284 -2.2572 31 1 -0.3633 -1.0268 0.0422 32 1 -0.3633 0.5500 0.8681 33 1 -0.3633 0.4768 -0.9104 34 1 3.7143 -1.9412 1.4068 35 1 4.0595 -0.2544 0.9195 36 1 3.1755 -2.5934 -0.7826 37 1 4.2019 -1.1924 -1.2255 38 1 0.0786 -1.2604 -1.8891 39 1 0.8824 -2.5529 -0.9612 40 1 1.1358 -2.8544 -5.6724 41 1 2.0701 -3.8092 -7.7346 42 1 3.5373 -5.7737 -7.6382 43 1 5.2132 -5.3936 -3.7952 44 1 3.1358 -5.8510 -3.3505 45 1 2.4727 -2.0449 -4.8073 46 1 1.1582 -0.9006 -4.4286 47 1 4.1109 1.2547 -3.9958 48 1 3.8294 0.0865 -5.3089 49 1 2.4968 1.1166 -4.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279444048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:53 Heat of formation + Delta-G solvation = -98.835632 kcal Electronic energy + Delta-G solvation = -32170.600364 eV Core-core repulsion = 28062.486476 eV Total energy + Delta-G solvation = -4108.113887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.15177 -39.30805 -37.91009 -37.25119 -34.68453 -34.00571 -33.52364 -31.76409 -30.74587 -30.23294 -29.48660 -27.24616 -26.21718 -25.35284 -24.95695 -22.98325 -22.25701 -21.35644 -20.99203 -19.78811 -19.06277 -18.09479 -17.34921 -16.49894 -16.12599 -16.06795 -15.67173 -15.48274 -15.13865 -14.88030 -14.52040 -14.29540 -14.01250 -13.97429 -13.62475 -13.27217 -13.06447 -12.87155 -12.59320 -12.55734 -12.42025 -12.40177 -12.17601 -12.06897 -12.00867 -11.65751 -11.43395 -11.24126 -11.09188 -10.96966 -10.95769 -10.74563 -10.52745 -10.45067 -10.31900 -10.02909 -9.88778 -9.72586 -9.17641 -9.09446 -8.36644 -7.89603 -7.76174 -7.30657 -4.58884 2.09337 2.59930 3.06077 3.10501 3.17673 3.32626 3.33588 3.48063 3.72618 3.95561 4.33565 4.42415 4.51282 4.59574 4.78479 4.93593 4.95452 5.02754 5.06927 5.13911 5.22685 5.29184 5.31523 5.40962 5.48357 5.52060 5.58971 5.68615 5.68971 5.72599 5.80104 5.85493 5.90000 5.92825 5.95011 5.99538 6.06029 6.10045 6.46396 6.55934 6.61713 6.69402 6.82548 7.09645 7.13902 7.37000 7.53897 7.57258 7.59867 7.71495 8.00065 8.05902 8.52529 8.60657 8.71440 9.94382 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003729 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.289369 B = 7507.464386 C = 8503.966658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.083 0.917 4 O -0.366 6.366 5 C 0.050 3.950 6 C -0.181 4.181 7 C 0.081 3.919 8 C 0.096 3.904 9 N -0.615 5.615 10 C 0.570 3.430 11 O -0.542 6.542 12 C -0.099 4.099 13 C -0.234 4.234 14 C -0.085 4.085 15 C -0.211 4.211 16 C 0.092 3.908 17 C -0.520 4.520 18 H 0.080 0.920 19 C 0.039 3.961 20 N -0.793 5.793 21 Si 1.066 2.934 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.153 4.153 26 C 0.065 3.935 27 C 0.070 3.930 28 H 0.068 0.932 29 C -0.140 4.140 30 O -0.364 6.364 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.296 0.704 44 H 0.112 0.888 45 H 0.125 0.875 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 13.817 2.734 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 H 0.101 0.899 4 O -0.285 6.285 5 C -0.026 4.026 6 C -0.218 4.218 7 C 0.040 3.960 8 C -0.027 4.027 9 N -0.349 5.349 10 C 0.361 3.639 11 O -0.419 6.419 12 C -0.102 4.102 13 C -0.254 4.254 14 C -0.104 4.104 15 C -0.231 4.231 16 C 0.089 3.911 17 C -0.548 4.548 18 H 0.098 0.902 19 C -0.183 4.183 20 N -0.415 5.415 21 Si 0.889 3.111 22 H -0.202 1.202 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.173 4.173 26 C -0.058 4.058 27 C 0.012 3.988 28 H 0.085 0.915 29 C -0.198 4.198 30 O -0.283 6.283 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.143 0.857 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.486 12.702 4.580 13.730 hybrid contribution -0.614 0.785 -1.484 1.787 sum -3.101 13.487 3.097 14.181 Atomic orbital electron populations 1.21926 0.92549 1.03503 1.02783 1.22683 0.95508 0.95595 0.82948 0.89945 1.89197 1.27843 1.74412 1.37040 1.23366 0.84469 1.00018 0.94793 1.23508 0.98870 1.02529 0.96938 1.22685 0.94220 0.90267 0.88819 1.22242 0.96169 0.96539 0.87736 1.48077 1.64773 1.05833 1.16215 1.18978 0.77186 0.80571 0.87133 1.90712 1.46621 1.59424 1.45168 1.19323 1.01365 0.98156 0.91369 1.20409 1.09315 1.03976 0.91708 1.20510 0.97299 0.96424 0.96130 1.21121 1.05788 0.98846 0.97349 1.17617 0.91249 0.91529 0.90726 1.20575 1.21857 1.07692 1.04650 0.90216 1.27049 0.93337 1.06052 0.91824 1.70465 1.32082 1.02337 1.36618 0.83635 0.76984 0.72813 0.77675 1.20161 1.19880 1.19687 1.21229 1.00428 0.96672 0.99014 1.22886 0.98108 0.92696 0.92070 1.22548 0.95620 0.94381 0.86284 0.91452 1.21710 1.02227 0.98271 0.97601 1.87788 1.81217 1.33039 1.26278 0.91097 0.91419 0.90580 0.88643 0.91962 0.89500 0.89507 0.90504 0.87949 0.88237 0.88528 0.88408 0.89113 0.87024 0.85689 0.91123 0.91602 0.90361 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.29 37.16 0.31 -1.23 16 2 C 0.09 1.09 3.59 -26.25 -0.09 1.00 16 3 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 4 O -0.37 -4.93 11.35 -35.23 -0.40 -5.33 16 5 C 0.05 0.61 7.65 38.00 0.29 0.90 16 6 C -0.18 -2.52 5.78 -25.37 -0.15 -2.67 16 7 C 0.08 1.09 0.97 -89.81 -0.09 1.01 16 8 C 0.10 1.45 3.90 -3.79 -0.01 1.44 16 9 N -0.61 -10.55 2.91 -173.91 -0.51 -11.05 16 10 C 0.57 12.27 7.32 -12.31 -0.09 12.18 16 11 O -0.54 -13.31 16.47 5.32 0.09 -13.23 16 12 C -0.10 -2.23 5.21 -105.03 -0.55 -2.78 16 13 C -0.23 -4.68 7.34 -38.92 -0.29 -4.97 16 14 C -0.09 -1.71 10.01 -39.72 -0.40 -2.11 16 15 C -0.21 -4.80 9.78 -38.81 -0.38 -5.18 16 16 C 0.09 2.32 5.21 -106.87 -0.56 1.77 16 17 C -0.52 -13.35 8.97 -37.73 -0.34 -13.69 16 18 H 0.08 1.98 7.96 -52.49 -0.42 1.56 16 19 C 0.04 0.98 4.92 -17.34 -0.09 0.89 16 20 N -0.79 -20.66 12.45 55.55 0.69 -19.97 16 21 Si 1.07 21.39 30.00 -169.99 -5.10 16.29 16 22 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.15 -3.89 7.61 -38.44 -0.29 -4.18 16 26 C 0.07 0.94 4.51 -3.75 -0.02 0.92 16 27 C 0.07 0.90 3.10 -26.80 -0.08 0.81 16 28 H 0.07 0.95 6.49 -51.93 -0.34 0.61 16 29 C -0.14 -1.41 9.57 37.16 0.36 -1.05 16 30 O -0.36 -4.82 9.84 -35.23 -0.35 -5.16 16 31 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.44 7.67 -51.93 -0.40 1.04 16 37 H 0.09 1.17 6.61 -51.93 -0.34 0.83 16 38 H 0.08 1.04 6.21 -51.93 -0.32 0.72 16 39 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 40 H 0.10 1.72 6.46 -52.48 -0.34 1.39 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 43 H 0.30 7.85 6.84 -40.82 -0.28 7.57 16 44 H 0.11 3.08 6.78 -52.49 -0.36 2.72 16 45 H 0.13 1.96 4.41 -51.93 -0.23 1.73 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -29.11 380.01 -9.46 -38.57 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.15 Total: 11.09 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.46 Total: -16.93 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.19 Total: -31.02 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.66 Total: -23.72 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.10 Total: 16.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.11 -9.46 -38.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279444048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.269 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds