Wall clock time and date at job start Wed Apr 1 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.43622 * 2 1 4 4 O 1.44551 * 110.39253 * 122.36075 * 2 1 3 5 5 C 1.44470 * 105.37300 * 158.77694 * 4 2 1 6 6 C 1.54612 * 104.82296 * 319.84833 * 5 4 2 7 7 C 1.53920 * 110.39112 * 237.64434 * 2 1 3 8 8 C 1.52645 * 110.21240 * 335.99167 * 7 2 1 9 9 N 1.47289 * 108.38407 * 173.35030 * 8 7 2 10 10 C 1.34776 * 121.05329 * 130.41903 * 9 8 7 11 11 O 1.21549 * 119.99959 * 3.62355 * 10 9 8 12 12 C 1.47891 * 120.00148 * 183.63343 * 10 9 8 13 13 C 1.39919 * 120.02313 * 315.92263 * 12 10 9 14 14 C 1.38330 * 120.35796 * 180.02562 * 13 12 10 15 15 C 1.37753 * 120.40949 * 0.02562 * 14 13 12 16 16 C 1.40748 * 120.04000 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17564 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99666 * 330.97417 * 17 16 15 19 19 C 1.39939 * 120.00192 * 150.97857 * 17 16 15 20 20 N 1.30825 * 119.99929 * 334.96341 * 19 17 16 21 21 Si 1.86798 * 120.00130 * 154.96501 * 19 17 16 22 22 H 1.48509 * 109.47028 * 89.99826 * 21 19 17 23 23 H 1.48507 * 109.47145 * 330.00120 * 21 19 17 24 24 H 1.48497 * 109.47074 * 210.00032 * 21 19 17 25 25 C 1.38998 * 120.02333 * 136.22100 * 12 10 9 26 26 C 1.47163 * 117.89608 * 310.68947 * 9 8 7 27 27 C 1.52866 * 108.75715 * 50.73938 * 26 9 8 28 28 H 1.08994 * 109.41172 * 67.31734 * 27 26 9 29 29 C 1.53001 * 109.58195 * 187.40458 * 27 26 9 30 30 O 1.42214 * 110.48485 * 98.82359 * 7 2 1 31 31 H 1.08998 * 109.47252 * 182.35278 * 1 2 3 32 32 H 1.09000 * 109.47174 * 302.35768 * 1 2 3 33 33 H 1.09000 * 109.46838 * 62.35912 * 1 2 3 34 34 H 1.09000 * 110.37346 * 201.01117 * 5 4 2 35 35 H 1.09004 * 110.45827 * 78.72859 * 5 4 2 36 36 H 1.08991 * 110.54515 * 265.30593 * 6 5 4 37 37 H 1.08996 * 110.54854 * 142.49321 * 6 5 4 38 38 H 1.08998 * 109.68413 * 53.62940 * 8 7 2 39 39 H 1.09005 * 109.68254 * 293.07043 * 8 7 2 40 40 H 1.08004 * 119.81899 * 359.97438 * 13 12 10 41 41 H 1.08000 * 119.79384 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.97524 * 179.97438 * 15 14 13 43 43 H 0.97008 * 119.99548 * 354.18687 * 20 19 17 44 44 H 1.07995 * 120.20487 * 359.97438 * 25 12 10 45 45 H 1.08999 * 109.62672 * 170.50900 * 26 9 8 46 46 H 1.09000 * 109.62835 * 291.08326 * 26 9 8 47 47 H 1.09005 * 109.47018 * 179.87486 * 29 27 26 48 48 H 1.08996 * 109.47089 * 299.87376 * 29 27 26 49 49 H 1.09001 * 109.47419 * 59.87617 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 8 2.0337 -0.7252 1.1445 5 6 3.3843 -1.1011 0.7956 6 6 3.3079 -1.5153 -0.6920 7 6 2.0663 -0.7721 -1.2188 8 6 1.0236 -1.7730 -1.7096 9 7 1.5091 -2.3720 -2.9645 10 6 1.5138 -3.7081 -3.1410 11 8 1.0523 -4.4359 -2.2838 12 6 2.0806 -4.2888 -4.3774 13 6 1.7814 -3.7186 -5.6196 14 6 2.3073 -4.2564 -6.7806 15 6 3.1309 -5.3594 -6.7274 16 6 3.4430 -5.9465 -5.4869 17 6 4.2887 -7.0787 -5.4289 18 1 4.3247 -7.7688 -6.2589 19 6 5.0787 -7.3048 -4.2961 20 7 5.4288 -6.3021 -3.5322 21 14 5.6333 -9.0381 -3.8749 22 1 6.9357 -9.3147 -4.5327 23 1 4.6200 -10.0122 -4.3541 24 1 5.7850 -9.1653 -2.4032 25 6 2.9058 -5.4050 -4.3068 26 6 1.9948 -1.4656 -4.0173 27 6 3.0096 -0.5002 -3.4051 28 1 3.9010 -1.0523 -3.1075 29 6 3.3889 0.5660 -4.4348 30 8 2.4313 0.1284 -2.2572 31 1 -0.3633 -1.0268 0.0422 32 1 -0.3633 0.5500 0.8681 33 1 -0.3633 0.4768 -0.9104 34 1 3.7143 -1.9412 1.4068 35 1 4.0595 -0.2544 0.9195 36 1 3.1755 -2.5934 -0.7826 37 1 4.2019 -1.1924 -1.2255 38 1 0.0786 -1.2604 -1.8891 39 1 0.8824 -2.5529 -0.9612 40 1 1.1358 -2.8544 -5.6724 41 1 2.0701 -3.8092 -7.7346 42 1 3.5373 -5.7737 -7.6382 43 1 5.2132 -5.3936 -3.7952 44 1 3.1358 -5.8510 -3.3505 45 1 2.4727 -2.0449 -4.8073 46 1 1.1582 -0.9006 -4.4286 47 1 4.1109 1.2547 -3.9958 48 1 3.8294 0.0865 -5.3089 49 1 2.4968 1.1166 -4.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279444048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:51 Heat of formation + Delta-G solvation = -116.156027 kcal Electronic energy + Delta-G solvation = -32171.351432 eV Core-core repulsion = 28062.486476 eV Total energy + Delta-G solvation = -4108.864956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.36729 -40.80666 -39.20864 -38.89059 -36.21372 -35.67876 -34.63401 -32.72888 -32.21992 -31.57650 -31.28770 -28.46475 -27.45162 -27.06308 -26.13443 -24.08813 -23.84501 -22.99029 -22.15120 -21.25427 -20.38894 -19.78302 -18.51865 -18.05907 -17.55483 -17.21258 -16.89608 -16.70656 -16.46278 -16.40610 -16.01223 -15.82178 -15.57121 -15.35338 -14.76139 -14.67816 -14.61500 -14.25384 -13.98204 -13.88490 -13.66609 -13.53293 -13.30754 -13.23157 -13.12641 -12.87722 -12.71921 -12.56237 -12.45478 -12.40681 -12.25065 -12.06852 -12.04036 -11.95823 -11.72396 -11.51169 -11.23380 -10.93569 -10.91266 -10.81229 -9.83560 -9.60617 -9.58095 -9.22200 -6.53802 0.30133 0.81054 1.45150 1.52676 1.58448 1.74498 1.84038 2.27771 2.29085 2.61907 2.73602 3.22994 3.34100 3.39423 3.53383 3.62106 3.71247 3.88297 3.95003 4.01660 4.12213 4.20234 4.27027 4.27964 4.36781 4.39616 4.44222 4.46729 4.51271 4.63547 4.69346 4.70827 4.74670 4.79689 4.85777 4.88446 4.93391 4.97913 5.00611 5.15796 5.22248 5.26859 5.31116 5.54457 5.58783 5.68143 5.73893 5.77741 6.04407 6.06118 6.16219 6.26504 6.64443 6.85860 6.94818 7.99977 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003729 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.289369 B = 7507.464386 C = 8503.966658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.092 3.908 3 H 0.099 0.901 4 O -0.381 6.381 5 C 0.053 3.947 6 C -0.183 4.183 7 C 0.085 3.915 8 C 0.095 3.905 9 N -0.605 5.605 10 C 0.563 3.437 11 O -0.587 6.587 12 C -0.108 4.108 13 C -0.205 4.205 14 C -0.078 4.078 15 C -0.215 4.215 16 C 0.067 3.933 17 C -0.559 4.559 18 H 0.079 0.921 19 C 0.003 3.997 20 N -0.821 5.821 21 Si 1.112 2.888 22 H -0.252 1.252 23 H -0.264 1.264 24 H -0.277 1.277 25 C -0.182 4.182 26 C 0.060 3.940 27 C 0.070 3.930 28 H 0.048 0.952 29 C -0.134 4.134 30 O -0.356 6.356 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.279 0.721 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 16.924 1.104 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.034 3.966 3 H 0.117 0.883 4 O -0.301 6.301 5 C -0.024 4.024 6 C -0.221 4.221 7 C 0.044 3.956 8 C -0.027 4.027 9 N -0.337 5.337 10 C 0.354 3.646 11 O -0.468 6.468 12 C -0.111 4.111 13 C -0.225 4.225 14 C -0.096 4.096 15 C -0.234 4.234 16 C 0.064 3.936 17 C -0.588 4.588 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.444 5.444 21 Si 0.929 3.071 22 H -0.176 1.176 23 H -0.189 1.189 24 H -0.202 1.202 25 C -0.202 4.202 26 C -0.062 4.062 27 C 0.012 3.988 28 H 0.066 0.934 29 C -0.191 4.191 30 O -0.275 6.275 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.521 15.871 2.917 16.517 hybrid contribution -0.426 0.022 -1.058 1.141 sum -3.947 15.894 1.859 16.481 Atomic orbital electron populations 1.21960 0.91141 1.03158 1.04399 1.22846 0.96646 0.95682 0.81384 0.88285 1.89186 1.28359 1.74788 1.37766 1.23427 0.84632 1.01052 0.93260 1.23464 0.99549 1.00237 0.98810 1.22658 0.93221 0.90126 0.89595 1.22401 0.97915 0.96178 0.86228 1.48103 1.63279 1.04719 1.17558 1.18937 0.77159 0.81991 0.86495 1.90679 1.48886 1.60932 1.46306 1.19559 1.00712 0.97591 0.93250 1.20886 1.07520 1.03694 0.90359 1.20992 0.95429 0.95001 0.98164 1.21418 1.05874 0.99522 0.96615 1.17905 0.91718 0.92149 0.91825 1.20760 1.23508 1.08938 1.05572 0.90271 1.28348 0.92723 1.08684 0.91466 1.70567 1.34338 1.01918 1.37622 0.83091 0.77883 0.68850 0.77280 1.17617 1.18867 1.20177 1.20982 1.02885 0.98727 0.97612 1.23133 0.99539 0.92360 0.91141 1.22614 0.94269 0.95063 0.86869 0.93434 1.21715 1.03211 0.97444 0.96749 1.87812 1.80996 1.32547 1.26127 0.92401 0.89858 0.88935 0.88532 0.89541 0.93356 0.89301 0.88014 0.90624 0.84329 0.83648 0.87195 0.90882 0.90982 0.86788 0.88012 0.90766 0.89500 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.29 71.98 0.60 -2.11 16 2 C 0.09 2.03 3.59 30.91 0.11 2.14 16 3 H 0.10 1.90 8.08 -2.39 -0.02 1.88 16 4 O -0.38 -9.96 11.35 -148.98 -1.69 -11.65 16 5 C 0.05 1.27 7.65 72.53 0.55 1.82 16 6 C -0.18 -5.24 5.78 31.48 0.18 -5.06 16 7 C 0.09 2.20 0.97 -10.27 -0.01 2.19 16 8 C 0.09 2.84 3.90 86.11 0.34 3.17 16 9 N -0.60 -20.50 2.91 -822.40 -2.39 -22.89 16 10 C 0.56 25.01 7.32 86.80 0.64 25.65 16 11 O -0.59 -30.64 16.47 -3.87 -0.06 -30.70 16 12 C -0.11 -4.96 5.21 -20.13 -0.10 -5.06 16 13 C -0.21 -7.68 7.34 22.70 0.17 -7.51 16 14 C -0.08 -2.87 10.01 22.18 0.22 -2.65 16 15 C -0.21 -9.58 9.78 22.77 0.22 -9.36 16 16 C 0.07 3.51 5.21 -21.32 -0.11 3.40 16 17 C -0.56 -30.18 8.97 23.47 0.21 -29.97 16 18 H 0.08 4.10 7.96 -2.91 -0.02 4.08 16 19 C 0.00 0.18 4.92 85.25 0.42 0.60 16 20 N -0.82 -45.90 12.45 21.82 0.27 -45.63 16 21 Si 1.11 44.82 30.00 68.60 2.06 46.87 16 22 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.18 -9.77 7.61 23.01 0.18 -9.59 16 26 C 0.06 1.57 4.51 86.21 0.39 1.96 16 27 C 0.07 1.65 3.10 30.55 0.09 1.74 16 28 H 0.05 1.32 6.49 -2.39 -0.02 1.31 16 29 C -0.13 -2.18 9.57 71.98 0.69 -1.49 16 30 O -0.36 -8.47 9.84 -148.98 -1.47 -9.94 16 31 H 0.06 1.20 6.75 -2.39 -0.02 1.19 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.37 7.69 -2.39 -0.02 1.35 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.75 7.67 -2.39 -0.02 1.73 16 37 H 0.09 2.46 6.61 -2.39 -0.02 2.44 16 38 H 0.10 2.55 6.21 -2.39 -0.01 2.53 16 39 H 0.08 2.71 6.91 -2.38 -0.02 2.69 16 40 H 0.14 4.13 6.46 -2.91 -0.02 4.11 16 41 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.28 16.12 6.84 -92.70 -0.63 15.49 16 44 H 0.07 4.38 6.78 -2.91 -0.02 4.36 16 45 H 0.11 3.27 4.41 -2.39 -0.01 3.25 16 46 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -69.29 380.01 2.59 -66.70 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 1.10 Total: 37.36 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 4.78 Total: -30.13 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -2.12 Total: -68.52 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -3.22 Total: -52.28 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.06 Total: 46.87 kcal Total: -69.29 2.59 -66.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279444048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.456 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds