Wall clock time and date at job start Wed Apr 1 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.51266 * 2 1 4 4 C 1.53296 * 109.51275 * 239.89816 * 2 1 3 5 5 N 1.47154 * 108.38231 * 187.77437 * 4 2 1 6 6 C 1.34785 * 120.97862 * 230.55702 * 5 4 2 7 7 O 1.21283 * 119.99529 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.00028 * 359.97438 * 6 5 4 9 9 C 1.50700 * 109.46898 * 180.02562 * 8 6 5 10 10 C 1.38327 * 119.96428 * 89.99696 * 9 8 6 11 11 C 1.38278 * 120.13570 * 179.97438 * 10 9 8 12 12 C 1.38126 * 120.07213 * 359.97438 * 11 10 9 13 13 C 1.38859 * 119.92589 * 0.02562 * 12 11 10 14 14 O 1.35758 * 120.06718 * 180.02562 * 13 12 11 15 15 C 1.34825 * 116.99612 * 354.46031 * 14 13 12 16 16 H 1.08006 * 120.00413 * 5.05970 * 15 14 13 17 17 C 1.38656 * 120.00059 * 185.05872 * 15 14 13 18 18 N 1.31555 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99687 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47311 * 90.00018 * 19 17 15 21 21 H 1.48509 * 109.47269 * 210.00245 * 19 17 15 22 22 H 1.48497 * 109.47031 * 329.99694 * 19 17 15 23 23 C 1.38078 * 119.96350 * 269.72582 * 9 8 6 24 24 C 1.47145 * 118.03720 * 50.53519 * 5 4 2 25 25 C 1.53292 * 108.41619 * 309.44704 * 24 5 4 26 26 H 1.09002 * 109.51162 * 292.39540 * 25 24 5 27 27 C 1.53005 * 109.51284 * 172.24604 * 25 24 5 28 28 C 1.53001 * 117.49435 * 248.74314 * 27 25 24 29 29 C 1.53000 * 117.49455 * 180.08645 * 27 25 24 30 30 O 1.42959 * 109.51276 * 120.15126 * 2 1 3 31 31 H 1.09001 * 109.46998 * 180.09786 * 1 2 3 32 32 H 1.08998 * 109.47199 * 300.10319 * 1 2 3 33 33 H 1.09005 * 109.47062 * 60.10355 * 1 2 3 34 34 H 1.08997 * 109.68074 * 68.05330 * 4 2 1 35 35 H 1.08992 * 109.68005 * 307.49925 * 4 2 1 36 36 H 1.09000 * 109.46990 * 299.99923 * 8 6 5 37 37 H 1.09000 * 109.46956 * 60.00228 * 8 6 5 38 38 H 1.07998 * 119.93216 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.96580 * 180.02562 * 11 10 9 40 40 H 1.07993 * 120.03949 * 180.02562 * 12 11 10 41 41 H 0.96999 * 120.00011 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03473 * 0.02562 * 23 9 8 43 43 H 1.08994 * 109.68467 * 69.18830 * 24 5 4 44 44 H 1.09001 * 109.67985 * 189.70575 * 24 5 4 45 45 H 1.08994 * 115.54835 * 34.41621 * 27 25 24 46 46 H 1.08994 * 117.50297 * 0.02562 * 28 27 25 47 47 H 1.09003 * 117.49371 * 145.02328 * 28 27 25 48 48 H 1.09005 * 117.49427 * 214.97134 * 29 27 25 49 49 H 1.08998 * 117.50745 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2500 5 7 3.5012 -0.8757 -1.1339 6 6 4.3194 -0.5024 -2.1378 7 8 5.5196 -0.6344 -2.0229 8 6 3.7430 0.0790 -3.4031 9 6 4.8606 0.4101 -4.3583 10 6 5.2966 -0.5376 -5.2667 11 6 6.3214 -0.2374 -6.1452 12 6 6.9126 1.0106 -6.1185 13 6 6.4771 1.9641 -5.2078 14 8 7.0557 3.1919 -5.1794 15 6 8.1225 3.3843 -5.9810 16 1 8.4297 2.6085 -6.6668 17 6 8.8254 4.5782 -5.9251 18 7 9.8661 4.7662 -6.7076 19 14 8.2946 5.9197 -4.7385 20 1 8.9913 5.7361 -3.4400 21 1 8.6438 7.2477 -5.3042 22 1 6.8267 5.8419 -4.5280 23 6 5.4444 1.6611 -4.3297 24 6 4.0407 -1.4458 0.1108 25 6 3.4320 -0.6862 1.2950 26 1 3.8038 0.3385 1.3001 27 6 3.8228 -1.3792 2.6019 28 6 2.7139 -2.0814 3.3881 29 6 3.3070 -0.7690 3.9067 30 8 2.0075 -0.6768 1.1652 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3633 0.5154 0.8890 33 1 -0.3633 0.5122 -0.8910 34 1 1.8031 -0.1389 -2.1376 35 1 1.5758 -1.7072 -1.3215 36 1 3.0741 -0.6473 -3.8648 37 1 3.1868 0.9858 -3.1657 38 1 4.8357 -1.5141 -5.2898 39 1 6.6594 -0.9794 -6.8535 40 1 7.7126 1.2446 -6.8051 41 1 10.3575 5.6016 -6.6687 42 1 5.1008 2.4019 -3.6229 43 1 3.7757 -2.5010 0.1763 44 1 5.1253 -1.3381 0.1239 45 1 4.8140 -1.8325 2.6155 46 1 1.7061 -2.0500 2.9742 47 1 2.9757 -2.9965 3.9193 48 1 3.9587 -0.8213 4.7789 49 1 2.6896 0.1264 3.8342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279449749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:05 Heat of formation + Delta-G solvation = -49.906348 kcal Electronic energy + Delta-G solvation = -30023.884307 eV Core-core repulsion = 25917.892153 eV Total energy + Delta-G solvation = -4105.992154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.75094 -39.38098 -38.67869 -37.10368 -36.60632 -34.84974 -33.08664 -32.39720 -32.08460 -29.71137 -29.26858 -27.19300 -26.67186 -25.17623 -24.05758 -22.72280 -21.97147 -21.71373 -20.85684 -20.63223 -19.25159 -17.70088 -17.38253 -17.20881 -16.86054 -16.21468 -16.07594 -15.72573 -15.41465 -15.14714 -14.75007 -14.68859 -14.12551 -14.04583 -13.69970 -13.53131 -13.38844 -13.38740 -12.89011 -12.73575 -12.59502 -12.43954 -12.31710 -12.12301 -11.96477 -11.76719 -11.69687 -11.55752 -11.28862 -11.14139 -10.82708 -10.74554 -10.73995 -10.69206 -10.59775 -10.18175 -10.13695 -9.77593 -9.36150 -8.84133 -8.74379 -8.12887 -7.33291 -6.37904 -4.04558 2.00861 2.30681 2.61572 2.74229 3.12821 3.23859 3.28295 3.41996 3.51459 4.16289 4.26693 4.33037 4.40191 4.49691 4.60100 4.64963 4.66205 4.73942 4.75104 4.91980 4.93748 4.97063 5.08286 5.12560 5.13205 5.24379 5.25637 5.30797 5.38831 5.45402 5.51623 5.54552 5.60136 5.62676 5.69215 5.73856 5.82877 5.85766 5.95093 6.13450 6.18344 6.27409 6.54752 6.80630 6.81667 7.11467 7.17440 7.23125 7.34263 7.63177 7.84007 8.07659 8.14209 8.97634 9.60458 10.69974 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.002420 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.143528 B =11565.861522 C =12366.043020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.064 0.936 4 C 0.078 3.922 5 N -0.625 5.625 6 C 0.518 3.482 7 O -0.514 6.514 8 C -0.092 4.092 9 C -0.036 4.036 10 C -0.188 4.188 11 C -0.075 4.075 12 C -0.217 4.217 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.088 3.912 25 C 0.111 3.889 26 H 0.067 0.933 27 C -0.156 4.156 28 C -0.162 4.162 29 C -0.172 4.172 30 O -0.372 6.372 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.279 0.721 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.333 -12.849 16.261 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.082 0.918 4 C -0.045 4.045 5 N -0.362 5.362 6 C 0.306 3.694 7 O -0.388 6.388 8 C -0.132 4.132 9 C -0.037 4.037 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.236 4.236 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.194 4.194 24 C -0.035 4.035 25 C 0.052 3.948 26 H 0.085 0.915 27 C -0.174 4.174 28 C -0.199 4.199 29 C -0.209 4.209 30 O -0.291 6.291 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.137 0.863 46 H 0.124 0.876 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.638 -12.634 16.477 28.579 hybrid contribution 0.212 0.647 0.149 0.697 sum -19.426 -11.988 16.626 28.240 Atomic orbital electron populations 1.21734 0.92053 1.03260 1.03021 1.22477 0.95536 0.95518 0.84996 0.91769 1.22494 0.80466 1.02002 0.99541 1.48219 1.06629 1.64660 1.16658 1.20814 0.86763 0.77439 0.84362 1.90763 1.14666 1.53012 1.80324 1.20616 0.97998 1.02148 0.92392 1.18650 0.96037 0.93509 0.95461 1.20410 1.01656 0.98493 1.00112 1.20738 0.95204 0.95787 0.97636 1.21300 1.04731 0.94434 1.03163 1.18999 0.92022 0.85048 0.93054 1.83566 1.42477 1.26370 1.60049 1.20763 1.03913 1.04116 1.17586 0.87645 1.24453 0.94559 0.97687 0.97314 1.69646 1.17773 1.26685 1.37840 0.86188 0.80299 0.79828 0.80616 1.19907 1.20816 1.18424 1.19920 1.00223 0.97116 1.02111 1.22187 1.00968 0.97542 0.82756 1.21860 0.81237 0.98680 0.93004 0.91505 1.22219 0.99531 1.05052 0.90610 1.22868 0.98883 0.95688 1.02485 1.22943 1.03767 0.97818 0.96398 1.87931 1.20692 1.77329 1.43181 0.91507 0.91421 0.90573 0.88496 0.90433 0.88267 0.88341 0.87756 0.87141 0.84958 0.91114 0.86912 0.90776 0.88014 0.86338 0.87628 0.89085 0.88781 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.57 37.16 0.36 -0.39 16 2 C 0.07 0.54 3.40 -26.58 -0.09 0.45 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.08 0.59 5.83 -3.53 -0.02 0.57 16 5 N -0.63 -6.89 3.02 -172.29 -0.52 -7.41 16 6 C 0.52 7.44 7.70 -10.98 -0.08 7.35 16 7 O -0.51 -9.85 15.50 5.55 0.09 -9.77 16 8 C -0.09 -1.16 4.20 -29.03 -0.12 -1.29 16 9 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 10 C -0.19 -3.30 9.70 -39.53 -0.38 -3.69 16 11 C -0.08 -1.44 10.04 -39.61 -0.40 -1.83 16 12 C -0.22 -4.89 9.17 -39.39 -0.36 -5.25 16 13 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 14 O -0.22 -5.97 8.59 0.04 0.00 -5.97 16 15 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 16 H 0.11 3.11 5.44 -52.48 -0.29 2.82 16 17 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 18 N -0.88 -25.92 13.96 55.48 0.77 -25.15 16 19 Si 0.91 22.15 28.62 -169.99 -4.86 17.29 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.17 -3.61 9.64 -39.39 -0.38 -3.99 16 24 C 0.09 0.92 5.91 -3.54 -0.02 0.90 16 25 C 0.11 1.03 3.14 -26.58 -0.08 0.94 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 C -0.16 -1.25 5.71 -90.62 -0.52 -1.76 16 28 C -0.16 -1.19 9.88 -26.69 -0.26 -1.45 16 29 C -0.17 -1.27 10.20 -26.69 -0.27 -1.54 16 30 O -0.37 -3.33 8.39 -35.23 -0.30 -3.63 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.58 6.05 -51.93 -0.31 0.26 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.96 7.96 -51.93 -0.41 0.55 16 37 H 0.10 1.03 7.60 -51.93 -0.39 0.64 16 38 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 41 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 1.24 7.08 -51.93 -0.37 0.87 16 45 H 0.12 0.87 8.11 -51.93 -0.42 0.44 16 46 H 0.11 0.85 7.07 -51.93 -0.37 0.49 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -33.75 398.79 -9.45 -43.20 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.49 Total: 3.09 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -3.15 Total: -17.67 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.25 Total: -32.55 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.21 Total: -19.36 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.75 -9.45 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279449749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.711 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds