Wall clock time and date at job start Wed Apr 1 2020 03:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.51266 * 2 1 4 4 C 1.53296 * 109.51275 * 239.89816 * 2 1 3 5 5 N 1.47154 * 108.38231 * 187.77437 * 4 2 1 6 6 C 1.34785 * 120.97862 * 230.55702 * 5 4 2 7 7 O 1.21283 * 119.99529 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.00028 * 359.97438 * 6 5 4 9 9 C 1.50700 * 109.46898 * 180.02562 * 8 6 5 10 10 C 1.38327 * 119.96428 * 89.99696 * 9 8 6 11 11 C 1.38278 * 120.13570 * 179.97438 * 10 9 8 12 12 C 1.38126 * 120.07213 * 359.97438 * 11 10 9 13 13 C 1.38859 * 119.92589 * 0.02562 * 12 11 10 14 14 O 1.35758 * 120.06718 * 180.02562 * 13 12 11 15 15 C 1.34825 * 116.99612 * 354.46031 * 14 13 12 16 16 H 1.08006 * 120.00413 * 5.05970 * 15 14 13 17 17 C 1.38656 * 120.00059 * 185.05872 * 15 14 13 18 18 N 1.31555 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99687 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47311 * 90.00018 * 19 17 15 21 21 H 1.48509 * 109.47269 * 210.00245 * 19 17 15 22 22 H 1.48497 * 109.47031 * 329.99694 * 19 17 15 23 23 C 1.38078 * 119.96350 * 269.72582 * 9 8 6 24 24 C 1.47145 * 118.03720 * 50.53519 * 5 4 2 25 25 C 1.53292 * 108.41619 * 309.44704 * 24 5 4 26 26 H 1.09002 * 109.51162 * 292.39540 * 25 24 5 27 27 C 1.53005 * 109.51284 * 172.24604 * 25 24 5 28 28 C 1.53001 * 117.49435 * 248.74314 * 27 25 24 29 29 C 1.53000 * 117.49455 * 180.08645 * 27 25 24 30 30 O 1.42959 * 109.51276 * 120.15126 * 2 1 3 31 31 H 1.09001 * 109.46998 * 180.09786 * 1 2 3 32 32 H 1.08998 * 109.47199 * 300.10319 * 1 2 3 33 33 H 1.09005 * 109.47062 * 60.10355 * 1 2 3 34 34 H 1.08997 * 109.68074 * 68.05330 * 4 2 1 35 35 H 1.08992 * 109.68005 * 307.49925 * 4 2 1 36 36 H 1.09000 * 109.46990 * 299.99923 * 8 6 5 37 37 H 1.09000 * 109.46956 * 60.00228 * 8 6 5 38 38 H 1.07998 * 119.93216 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.96580 * 180.02562 * 11 10 9 40 40 H 1.07993 * 120.03949 * 180.02562 * 12 11 10 41 41 H 0.96999 * 120.00011 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03473 * 0.02562 * 23 9 8 43 43 H 1.08994 * 109.68467 * 69.18830 * 24 5 4 44 44 H 1.09001 * 109.67985 * 189.70575 * 24 5 4 45 45 H 1.08994 * 115.54835 * 34.41621 * 27 25 24 46 46 H 1.08994 * 117.50297 * 0.02562 * 28 27 25 47 47 H 1.09003 * 117.49371 * 145.02328 * 28 27 25 48 48 H 1.09005 * 117.49427 * 214.97134 * 29 27 25 49 49 H 1.08998 * 117.50745 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2500 5 7 3.5012 -0.8757 -1.1339 6 6 4.3194 -0.5024 -2.1378 7 8 5.5196 -0.6344 -2.0229 8 6 3.7430 0.0790 -3.4031 9 6 4.8606 0.4101 -4.3583 10 6 5.2966 -0.5376 -5.2667 11 6 6.3214 -0.2374 -6.1452 12 6 6.9126 1.0106 -6.1185 13 6 6.4771 1.9641 -5.2078 14 8 7.0557 3.1919 -5.1794 15 6 8.1225 3.3843 -5.9810 16 1 8.4297 2.6085 -6.6668 17 6 8.8254 4.5782 -5.9251 18 7 9.8661 4.7662 -6.7076 19 14 8.2946 5.9197 -4.7385 20 1 8.9913 5.7361 -3.4400 21 1 8.6438 7.2477 -5.3042 22 1 6.8267 5.8419 -4.5280 23 6 5.4444 1.6611 -4.3297 24 6 4.0407 -1.4458 0.1108 25 6 3.4320 -0.6862 1.2950 26 1 3.8038 0.3385 1.3001 27 6 3.8228 -1.3792 2.6019 28 6 2.7139 -2.0814 3.3881 29 6 3.3070 -0.7690 3.9067 30 8 2.0075 -0.6768 1.1652 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3633 0.5154 0.8890 33 1 -0.3633 0.5122 -0.8910 34 1 1.8031 -0.1389 -2.1376 35 1 1.5758 -1.7072 -1.3215 36 1 3.0741 -0.6473 -3.8648 37 1 3.1868 0.9858 -3.1657 38 1 4.8357 -1.5141 -5.2898 39 1 6.6594 -0.9794 -6.8535 40 1 7.7126 1.2446 -6.8051 41 1 10.3575 5.6016 -6.6687 42 1 5.1008 2.4019 -3.6229 43 1 3.7757 -2.5010 0.1763 44 1 5.1253 -1.3381 0.1239 45 1 4.8140 -1.8325 2.6155 46 1 1.7061 -2.0500 2.9742 47 1 2.9757 -2.9965 3.9193 48 1 3.9587 -0.8213 4.7789 49 1 2.6896 0.1264 3.8342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279449749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:04 Heat of formation + Delta-G solvation = -69.913642 kcal Electronic energy + Delta-G solvation = -30024.751888 eV Core-core repulsion = 25917.892153 eV Total energy + Delta-G solvation = -4106.859736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.66109 -40.87118 -39.85441 -38.30793 -37.71067 -35.75400 -34.50060 -33.88323 -33.26162 -31.15655 -30.35859 -28.40120 -27.34476 -27.18238 -24.95422 -23.36653 -23.29728 -22.66597 -22.27982 -21.33632 -20.32361 -19.63912 -18.85637 -18.31141 -17.67516 -17.03879 -16.99376 -16.81897 -16.69619 -16.33863 -16.08672 -15.78258 -15.64192 -15.41988 -15.01579 -14.93723 -14.57076 -14.28720 -14.10582 -14.01510 -13.93739 -13.54422 -13.11510 -13.05804 -13.02139 -12.87434 -12.55685 -12.52745 -12.42559 -12.36017 -12.32345 -12.17827 -11.93699 -11.79371 -11.35296 -11.32484 -11.28151 -10.96542 -10.90565 -10.80619 -9.69226 -9.59579 -9.08342 -8.51633 -6.24401 0.45538 0.68034 1.28008 1.33184 1.49003 1.55862 1.83149 2.26185 2.51054 2.74864 2.90851 2.98510 3.13514 3.50553 3.63211 3.77471 3.79268 3.86956 4.00018 4.04268 4.08187 4.13624 4.22500 4.26198 4.32123 4.37850 4.40472 4.47631 4.52956 4.56186 4.61197 4.67822 4.72048 4.83560 4.83965 4.93215 4.95410 5.02082 5.07001 5.21734 5.23890 5.32709 5.36269 5.37356 5.37910 5.62512 5.70318 5.74926 5.89623 6.16650 6.19845 6.29443 6.82611 7.10638 7.57224 8.60232 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.002420 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.143528 B =11565.861522 C =12366.043020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.067 3.933 3 H 0.056 0.944 4 C 0.073 3.927 5 N -0.618 5.618 6 C 0.515 3.485 7 O -0.575 6.575 8 C -0.088 4.088 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.971 3.029 20 H -0.270 1.270 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.181 4.181 24 C 0.088 3.912 25 C 0.118 3.882 26 H 0.050 0.950 27 C -0.167 4.167 28 C -0.154 4.154 29 C -0.172 4.172 30 O -0.377 6.377 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.285 0.715 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.198 -14.523 17.753 33.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 H 0.074 0.926 4 C -0.048 4.048 5 N -0.352 5.352 6 C 0.305 3.695 7 O -0.454 6.454 8 C -0.127 4.127 9 C -0.029 4.029 10 C -0.189 4.189 11 C -0.095 4.095 12 C -0.259 4.259 13 C 0.070 3.930 14 O -0.154 6.154 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.195 1.195 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.200 4.200 24 C -0.035 4.035 25 C 0.059 3.941 26 H 0.068 0.932 27 C -0.185 4.185 28 C -0.191 4.191 29 C -0.209 4.209 30 O -0.296 6.296 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.141 0.859 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.583 -14.347 17.986 32.946 hybrid contribution 1.201 0.855 -0.260 1.497 sum -22.381 -13.493 17.726 31.578 Atomic orbital electron populations 1.21732 0.90034 1.03837 1.03850 1.22666 0.97021 0.94928 0.84476 0.92612 1.22825 0.77947 1.03514 1.00557 1.48268 1.08041 1.63056 1.15830 1.21066 0.86166 0.76965 0.85280 1.90756 1.17193 1.55870 1.81584 1.20741 0.96654 1.04688 0.90618 1.19189 0.96310 0.91813 0.95579 1.21003 0.99860 0.99992 0.98023 1.21115 0.95179 0.94722 0.98502 1.21329 1.05140 0.96209 1.03248 1.19586 0.93580 0.84807 0.95001 1.83504 1.42730 1.28409 1.60789 1.20714 1.05035 1.04011 1.17854 0.90257 1.25286 0.94621 0.99880 0.99124 1.69728 1.19166 1.27806 1.39747 0.85224 0.79582 0.77531 0.78396 1.19474 1.18779 1.18577 1.20251 0.99398 0.98931 1.01409 1.22195 0.99812 0.98319 0.83149 1.21702 0.81550 0.97648 0.93152 0.93210 1.22252 1.00118 1.05771 0.90361 1.22884 0.98182 0.96103 1.01925 1.22987 1.03772 0.97748 0.96363 1.87945 1.20089 1.77471 1.44117 0.91008 0.91827 0.88581 0.86031 0.88678 0.83796 0.85491 0.83448 0.84136 0.87466 0.90552 0.86114 0.89696 0.90310 0.85937 0.88192 0.87797 0.87699 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.57 71.98 0.69 -0.25 16 2 C 0.07 0.80 3.40 30.69 0.10 0.90 16 3 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.07 0.80 5.83 86.35 0.50 1.30 16 5 N -0.62 -11.89 3.02 -817.37 -2.47 -14.36 16 6 C 0.52 13.41 7.70 87.66 0.68 14.09 16 7 O -0.58 -21.59 15.50 -3.04 -0.05 -21.64 16 8 C -0.09 -1.82 4.20 29.10 0.12 -1.70 16 9 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 10 C -0.17 -5.39 9.70 22.30 0.22 -5.17 16 11 C -0.08 -2.84 10.04 22.25 0.22 -2.62 16 12 C -0.24 -11.24 9.17 22.39 0.21 -11.04 16 13 C 0.12 5.93 6.65 22.58 0.15 6.08 16 14 O -0.25 -14.09 8.59 -22.78 -0.20 -14.28 16 15 C -0.40 -24.58 9.95 67.92 0.68 -23.91 16 16 H 0.08 5.11 5.44 -2.91 -0.02 5.09 16 17 C 0.01 0.54 5.49 84.83 0.47 1.01 16 18 N -0.92 -56.75 13.96 21.61 0.30 -56.45 16 19 Si 0.97 47.01 28.62 68.60 1.96 48.97 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 23 C -0.18 -7.39 9.64 22.39 0.22 -7.18 16 24 C 0.09 1.74 5.91 86.35 0.51 2.25 16 25 C 0.12 2.07 3.14 30.69 0.10 2.17 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 C -0.17 -2.49 5.71 -10.79 -0.06 -2.55 16 28 C -0.15 -1.98 9.88 30.62 0.30 -1.67 16 29 C -0.17 -2.31 10.20 30.62 0.31 -2.00 16 30 O -0.38 -5.97 8.39 -148.98 -1.25 -7.22 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.12 0.74 6.05 -2.39 -0.01 0.72 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.14 1.77 7.96 -2.39 -0.02 1.75 16 37 H 0.13 1.99 7.60 -2.39 -0.02 1.97 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.11 5.48 5.64 -2.91 -0.02 5.46 16 41 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 42 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.94 7.08 -2.39 -0.02 1.93 16 45 H 0.12 1.70 8.11 -2.39 -0.02 1.68 16 46 H 0.10 1.42 7.07 -2.39 -0.02 1.40 16 47 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.57 398.79 4.57 -75.00 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.95 Total: 21.26 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 5.32 Total: -31.28 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.17 Total: -70.81 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.49 Total: -43.15 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.96 Total: 48.97 kcal Total: -79.57 4.57 -75.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279449749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.089 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds