Wall clock time and date at job start Wed Apr 1 2020 03:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.50840 * 2 1 4 4 C 1.53293 * 109.51212 * 120.10112 * 2 1 3 5 5 N 1.47145 * 108.38470 * 172.27664 * 4 2 1 6 6 C 1.34777 * 120.98212 * 129.48325 * 5 4 2 7 7 O 1.21287 * 120.00199 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00161 * 0.02562 * 6 5 4 9 9 C 1.50698 * 109.47256 * 180.02562 * 8 6 5 10 10 C 1.38325 * 119.96662 * 269.71865 * 9 8 6 11 11 C 1.38278 * 120.14285 * 179.76680 * 10 9 8 12 12 C 1.38127 * 120.06483 * 0.51464 * 11 10 9 13 13 C 1.38857 * 119.93169 * 359.73845 * 12 11 10 14 14 O 1.35749 * 120.06723 * 179.97438 * 13 12 11 15 15 C 1.34827 * 116.99966 * 354.49814 * 14 13 12 16 16 H 1.07998 * 120.00338 * 5.05464 * 15 14 13 17 17 C 1.38654 * 119.99601 * 185.05627 * 15 14 13 18 18 N 1.31563 * 120.00119 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00387 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47281 * 89.99817 * 19 17 15 21 21 H 1.48502 * 109.47342 * 210.00125 * 19 17 15 22 22 H 1.48501 * 109.46989 * 329.99988 * 19 17 15 23 23 C 1.38074 * 119.96745 * 90.00094 * 9 8 6 24 24 C 1.47149 * 118.03634 * 309.46570 * 5 4 2 25 25 C 1.53292 * 108.38684 * 50.53032 * 24 5 4 26 26 H 1.09001 * 109.50622 * 67.62435 * 25 24 5 27 27 C 1.53002 * 109.51351 * 187.72074 * 25 24 5 28 28 C 1.52992 * 117.50240 * 248.75090 * 27 25 24 29 29 C 1.53001 * 117.49902 * 180.08652 * 27 25 24 30 30 O 1.42954 * 109.22676 * 307.70189 * 25 24 5 31 31 H 1.08997 * 109.47419 * 300.00121 * 1 2 3 32 32 H 1.09000 * 109.47118 * 60.00541 * 1 2 3 33 33 H 1.09002 * 109.47056 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.67903 * 292.00433 * 4 2 1 35 35 H 1.09005 * 109.68616 * 52.54935 * 4 2 1 36 36 H 1.09004 * 109.46740 * 299.99989 * 8 6 5 37 37 H 1.09001 * 109.47307 * 59.99829 * 8 6 5 38 38 H 1.08003 * 119.92681 * 359.97438 * 10 9 8 39 39 H 1.08000 * 119.96585 * 180.25891 * 11 10 9 40 40 H 1.07995 * 120.02978 * 179.72557 * 12 11 10 41 41 H 0.97000 * 120.00149 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.03738 * 359.97438 * 23 9 8 43 43 H 1.09002 * 109.68238 * 170.26036 * 24 5 4 44 44 H 1.09006 * 109.68088 * 290.76624 * 24 5 4 45 45 H 1.09001 * 115.54667 * 34.42440 * 27 25 24 46 46 H 1.09003 * 117.50162 * 0.02562 * 28 27 25 47 47 H 1.08997 * 117.50141 * 145.02568 * 28 27 25 48 48 H 1.08998 * 117.49810 * 214.98408 * 29 27 25 49 49 H 1.09004 * 117.49724 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7247 1.2500 5 7 3.5013 -0.8746 1.1345 6 6 4.3187 -0.5018 2.1392 7 8 5.5190 -0.6329 2.0248 8 6 3.7413 0.0780 3.4047 9 6 4.8582 0.4100 4.3603 10 6 5.2915 -0.5357 5.2721 11 6 6.3193 -0.2365 6.1474 12 6 6.9095 1.0120 6.1209 13 6 6.4734 1.9653 5.2103 14 8 7.0511 3.1934 5.1821 15 6 7.9632 3.4628 6.1378 16 1 8.2643 2.6905 6.8301 17 6 8.5145 4.7316 6.2319 18 7 9.4041 4.9947 7.1648 19 14 7.9942 6.0673 5.0342 20 1 6.8294 6.8029 5.5884 21 1 9.1215 7.0110 4.8248 22 1 7.6181 5.4499 3.7370 23 6 5.4442 1.6599 4.3288 24 6 4.0417 -1.4440 -0.1101 25 6 3.4322 -0.6844 -1.2939 26 1 3.8032 0.3405 -1.2985 27 6 3.8244 -1.3758 -2.6012 28 6 4.7897 -0.6363 -3.5296 29 6 3.3114 -0.7630 -3.9059 30 8 2.0085 -0.6762 -1.1652 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8022 -0.1393 2.1378 35 1 1.5764 -1.7077 1.3212 36 1 3.1846 0.9847 3.1679 37 1 3.0726 -0.6491 3.8654 38 1 4.8282 -1.5109 5.2981 39 1 6.6581 -0.9785 6.8553 40 1 7.7092 1.2465 6.8077 41 1 9.7901 5.8822 7.2304 42 1 5.1027 2.3993 3.6195 43 1 5.1262 -1.3351 -0.1230 44 1 3.7781 -2.4997 -0.1756 45 1 3.9051 -2.4617 -2.5528 46 1 5.1459 0.3427 -3.2089 47 1 5.5054 -1.2356 -4.0923 48 1 3.0551 -1.4458 -4.7160 49 1 2.6941 0.1324 -3.8329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279449756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:12 Heat of formation + Delta-G solvation = -70.698074 kcal Electronic energy + Delta-G solvation = -29977.346170 eV Core-core repulsion = 25870.452419 eV Total energy + Delta-G solvation = -4106.893751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.65777 -40.86611 -39.81778 -38.30583 -37.85733 -35.79545 -34.49877 -33.90609 -33.30549 -31.15296 -30.29531 -28.37950 -27.34179 -27.17767 -24.97440 -23.40639 -23.25829 -22.61090 -22.21386 -21.61693 -20.31470 -19.63782 -18.85479 -18.32191 -17.77897 -17.18307 -16.98413 -16.86853 -16.65917 -16.18953 -16.09316 -15.73694 -15.68075 -15.37398 -15.02177 -14.90271 -14.59120 -14.31074 -14.13866 -14.00037 -13.97467 -13.56793 -13.13681 -13.05951 -13.02974 -12.88368 -12.54474 -12.51236 -12.44680 -12.42105 -12.35909 -12.09768 -11.94866 -11.82207 -11.36483 -11.32629 -11.28598 -11.06800 -10.94172 -10.84309 -9.69349 -9.61211 -9.08431 -8.51492 -6.24322 0.45433 0.68041 1.28330 1.32887 1.49572 1.55107 1.81422 2.26476 2.36486 2.74727 3.02389 3.07488 3.09547 3.45966 3.61011 3.75295 3.77839 3.85279 3.96297 4.03980 4.06077 4.08269 4.15277 4.25675 4.29257 4.37520 4.38126 4.48131 4.51186 4.55097 4.59138 4.67662 4.70557 4.76489 4.82808 4.93061 4.95265 5.00244 5.05951 5.18327 5.21643 5.23323 5.31839 5.36558 5.37854 5.62482 5.70241 5.74968 5.89675 6.16523 6.19552 6.28948 6.82734 7.09858 7.57407 8.60351 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.002463 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.185231 B =11363.817609 C =12176.582046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.055 0.945 4 C 0.073 3.927 5 N -0.619 5.619 6 C 0.516 3.484 7 O -0.575 6.575 8 C -0.088 4.088 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.119 3.881 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.181 4.181 24 C 0.087 3.913 25 C 0.118 3.882 26 H 0.047 0.953 27 C -0.159 4.159 28 C -0.174 4.174 29 C -0.157 4.157 30 O -0.378 6.378 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.285 0.715 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.608 -14.569 -18.804 32.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 H 0.074 0.926 4 C -0.049 4.049 5 N -0.352 5.352 6 C 0.305 3.695 7 O -0.453 6.453 8 C -0.127 4.127 9 C -0.029 4.029 10 C -0.189 4.189 11 C -0.095 4.095 12 C -0.259 4.259 13 C 0.071 3.929 14 O -0.155 6.155 15 C -0.476 4.476 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.200 4.200 24 C -0.036 4.036 25 C 0.060 3.940 26 H 0.065 0.935 27 C -0.178 4.178 28 C -0.211 4.211 29 C -0.194 4.194 30 O -0.298 6.298 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.106 0.894 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.989 -14.389 -19.034 32.448 hybrid contribution 1.099 0.845 0.318 1.422 sum -20.891 -13.544 -18.716 31.148 Atomic orbital electron populations 1.21735 0.90011 1.03858 1.03874 1.22683 0.97087 0.94917 0.84522 0.92649 1.22836 0.77943 1.03569 1.00551 1.48271 1.08051 1.63120 1.15804 1.21061 0.86178 0.76945 0.85267 1.90754 1.17146 1.55836 1.81611 1.20742 0.96679 1.04698 0.90615 1.19184 0.96322 0.91828 0.95561 1.21006 0.99855 1.00029 0.97987 1.21117 0.95209 0.94712 0.98469 1.21329 1.05072 0.95998 1.03520 1.19583 0.92807 0.85162 0.95390 1.83505 1.52163 1.29864 1.49926 1.20716 1.18096 0.98966 1.09855 0.90241 1.25281 0.95468 0.99356 0.98748 1.69731 1.28891 1.23874 1.33941 0.85219 0.78635 0.77759 0.79088 1.18554 1.19059 1.19260 1.20251 0.98669 0.99071 1.02041 1.22224 0.99920 0.98291 0.83128 1.21806 0.81564 0.97454 0.93192 0.93512 1.22130 1.06241 0.99732 0.89675 1.23112 0.93640 1.01863 1.02500 1.22886 0.96170 1.03109 0.97207 1.87975 1.20175 1.77551 1.44072 0.88515 0.91805 0.91019 0.85972 0.88612 0.85518 0.83776 0.83425 0.84121 0.87456 0.90543 0.86165 0.90254 0.89586 0.86150 0.89355 0.86982 0.87175 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.57 71.98 0.69 -0.32 16 2 C 0.07 0.82 3.40 30.69 0.10 0.93 16 3 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 4 C 0.07 0.81 5.83 86.35 0.50 1.32 16 5 N -0.62 -12.03 3.02 -817.36 -2.47 -14.49 16 6 C 0.52 13.45 7.70 87.66 0.68 14.13 16 7 O -0.57 -21.53 15.50 -3.05 -0.05 -21.58 16 8 C -0.09 -1.84 4.20 29.10 0.12 -1.72 16 9 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 10 C -0.17 -5.39 9.70 22.30 0.22 -5.18 16 11 C -0.08 -2.84 10.04 22.25 0.22 -2.61 16 12 C -0.24 -11.25 9.17 22.39 0.21 -11.04 16 13 C 0.12 5.95 6.65 22.58 0.15 6.10 16 14 O -0.25 -14.12 8.59 -22.70 -0.19 -14.31 16 15 C -0.40 -24.54 9.95 67.92 0.68 -23.86 16 16 H 0.08 5.11 5.44 -2.91 -0.02 5.09 16 17 C 0.01 0.57 5.49 84.83 0.47 1.04 16 18 N -0.92 -56.53 13.96 21.61 0.30 -56.23 16 19 Si 0.97 46.84 28.62 68.60 1.96 48.80 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 23 C -0.18 -7.43 9.65 22.39 0.22 -7.21 16 24 C 0.09 1.74 5.91 86.35 0.51 2.25 16 25 C 0.12 2.12 2.97 30.69 0.09 2.21 16 26 H 0.05 0.98 7.90 -2.39 -0.02 0.96 16 27 C -0.16 -2.38 5.39 -10.80 -0.06 -2.44 16 28 C -0.17 -2.43 10.18 30.62 0.31 -2.12 16 29 C -0.16 -2.06 10.17 30.62 0.31 -1.75 16 30 O -0.38 -6.38 9.95 -148.98 -1.48 -7.86 16 31 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.12 0.77 6.05 -2.39 -0.01 0.75 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.13 2.01 7.60 -2.38 -0.02 1.99 16 37 H 0.14 1.79 7.96 -2.39 -0.02 1.77 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.11 5.48 5.64 -2.91 -0.02 5.46 16 41 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 43 H 0.08 1.98 7.08 -2.39 -0.02 1.97 16 44 H 0.09 1.49 8.13 -2.38 -0.02 1.47 16 45 H 0.12 1.58 8.11 -2.39 -0.02 1.56 16 46 H 0.09 1.37 8.05 -2.39 -0.02 1.35 16 47 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -79.80 400.86 4.35 -75.45 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.95 Total: 21.50 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 5.33 Total: -31.28 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -2.17 Total: -70.72 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.72 Total: -43.75 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.96 Total: 48.80 kcal Total: -79.80 4.35 -75.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279449756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.753 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds