Wall clock time and date at job start Wed Apr 1 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.50760 * 2 1 4 4 C 1.52877 * 109.36937 * 120.14739 * 2 1 3 5 5 N 1.47148 * 108.60958 * 67.81843 * 4 2 1 6 6 C 1.34777 * 120.98443 * 230.50432 * 5 4 2 7 7 O 1.21281 * 120.00010 * 179.71238 * 6 5 4 8 8 C 1.50699 * 119.99857 * 359.71785 * 6 5 4 9 9 C 1.50700 * 109.46932 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96836 * 270.27391 * 9 8 6 11 11 C 1.38274 * 120.13870 * 180.23201 * 10 9 8 12 12 C 1.38120 * 120.07054 * 359.49508 * 11 10 9 13 13 C 1.38854 * 119.93208 * 0.24938 * 12 11 10 14 14 O 1.35745 * 120.07183 * 179.97438 * 13 12 11 15 15 C 1.34830 * 117.00000 * 354.46763 * 14 13 12 16 16 H 1.07993 * 119.99847 * 5.04988 * 15 14 13 17 17 C 1.38657 * 120.00052 * 185.05927 * 15 14 13 18 18 N 1.31557 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46980 * 119.99511 * 19 17 15 22 22 H 1.48493 * 109.46916 * 239.99711 * 19 17 15 23 23 C 1.38076 * 119.96553 * 89.99540 * 9 8 6 24 24 C 1.47160 * 118.03260 * 50.22541 * 5 4 2 25 25 C 1.53295 * 108.38376 * 309.72082 * 24 5 4 26 26 H 1.09001 * 109.50980 * 292.32344 * 25 24 5 27 27 C 1.52999 * 109.50993 * 172.22560 * 25 24 5 28 28 C 1.52996 * 117.50130 * 248.74534 * 27 25 24 29 29 C 1.52996 * 117.50171 * 180.08578 * 27 25 24 30 30 O 1.42953 * 109.22552 * 52.29956 * 25 24 5 31 31 H 1.09002 * 109.47143 * 180.10073 * 1 2 3 32 32 H 1.09000 * 109.47635 * 300.10297 * 1 2 3 33 33 H 1.09005 * 109.47263 * 60.10298 * 1 2 3 34 34 H 1.09006 * 109.61978 * 307.99872 * 4 2 1 35 35 H 1.08995 * 109.52648 * 187.58928 * 4 2 1 36 36 H 1.09003 * 109.47311 * 60.00189 * 8 6 5 37 37 H 1.08996 * 109.46865 * 299.99317 * 8 6 5 38 38 H 1.08003 * 119.92526 * 359.97438 * 10 9 8 39 39 H 1.07999 * 119.96585 * 179.76608 * 11 10 9 40 40 H 1.08004 * 120.03653 * 180.27767 * 12 11 10 41 41 H 0.96993 * 120.00384 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.03868 * 0.02562 * 23 9 8 43 43 H 1.08996 * 109.67721 * 69.44711 * 24 5 4 44 44 H 1.08993 * 109.67949 * 189.95683 * 24 5 4 45 45 H 1.09005 * 115.55018 * 34.41556 * 27 25 24 46 46 H 1.09009 * 117.49768 * 0.02562 * 28 27 25 47 47 H 1.08996 * 117.50167 * 145.01316 * 28 27 25 48 48 H 1.09000 * 117.50299 * 214.97842 * 29 27 25 49 49 H 1.09001 * 117.49449 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0370 -0.7243 1.2472 5 7 1.6960 -2.1512 1.1327 6 6 1.0709 -2.7978 2.1364 7 8 0.7936 -3.9729 2.0209 8 6 0.7163 -2.0608 3.4021 9 6 0.0295 -3.0034 4.3566 10 6 -1.3462 -3.1427 4.3201 11 6 -1.9804 -4.0029 5.1975 12 6 -1.2406 -4.7338 6.1064 13 6 0.1411 -4.6002 6.1421 14 8 0.8709 -5.3167 7.0346 15 6 0.1872 -6.0525 7.9340 16 1 -0.8889 -6.1183 7.8715 17 6 0.8657 -6.7247 8.9392 18 7 2.1766 -6.6448 9.0151 19 14 -0.0817 -7.7435 10.1857 20 1 -1.5338 -7.6703 9.8838 21 1 0.3684 -9.1569 10.1144 22 1 0.1670 -7.2130 11.5502 23 6 0.7748 -3.7313 5.2628 24 6 2.0522 -2.8496 -0.1127 25 6 1.5397 -2.0203 -1.2957 26 1 0.4497 -2.0285 -1.3009 27 6 2.0615 -2.6189 -2.6035 28 6 3.0941 -1.8081 -3.3891 29 6 1.6588 -1.9271 -3.9073 30 8 2.0075 -0.6758 -1.1658 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3634 0.5154 0.8890 33 1 -0.3634 0.5123 -0.8909 34 1 1.5620 -0.3034 2.1334 35 1 3.1184 -0.6100 1.3205 36 1 0.0477 -1.2331 3.1655 37 1 1.6247 -1.6738 3.8638 38 1 -1.9265 -2.5752 3.6076 39 1 -3.0550 -4.1067 5.1691 40 1 -1.7361 -5.4089 6.7885 41 1 2.6512 -7.1147 9.7185 42 1 1.8493 -3.6252 5.2882 43 1 3.1353 -2.9530 -0.1786 44 1 1.5879 -3.8356 -0.1262 45 1 2.1570 -3.7047 -2.6184 46 1 3.4021 -0.8484 -2.9740 47 1 3.8687 -2.3604 -3.9211 48 1 1.4896 -2.5576 -4.7802 49 1 1.0217 -1.0458 -3.8334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279449760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:18 Heat of formation + Delta-G solvation = -48.568678 kcal Electronic energy + Delta-G solvation = -30134.627376 eV Core-core repulsion = 26028.693228 eV Total energy + Delta-G solvation = -4105.934149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.87196 -39.30602 -38.56205 -37.08439 -36.43096 -34.78760 -32.73037 -32.27439 -31.85716 -29.74139 -29.10716 -27.31204 -26.58314 -25.26063 -24.26390 -22.65815 -22.20010 -21.60982 -20.94039 -20.04142 -19.09314 -17.64160 -17.46553 -17.05585 -16.74652 -16.37767 -15.88673 -15.53046 -15.10095 -15.01704 -14.86824 -14.54800 -14.35323 -14.14568 -13.86451 -13.57856 -13.42365 -13.28163 -12.80079 -12.69915 -12.41659 -12.37689 -12.19600 -11.89192 -11.81055 -11.68239 -11.61178 -11.51383 -11.24495 -11.04906 -10.81369 -10.74478 -10.71028 -10.58555 -10.54699 -10.40024 -10.09098 -9.70385 -9.29473 -8.80258 -8.66665 -8.02937 -7.17779 -6.40368 -3.99274 2.10673 2.42650 2.69665 2.81055 3.15260 3.16283 3.21889 3.22018 3.55188 4.00093 4.23244 4.32974 4.46844 4.56728 4.58530 4.67877 4.72655 4.78179 4.89091 4.95840 5.01618 5.04847 5.11579 5.13660 5.18449 5.29338 5.38577 5.39660 5.48360 5.50495 5.53137 5.63697 5.65224 5.69404 5.77840 5.79694 5.86492 5.96141 5.97712 6.20487 6.26432 6.37701 6.69227 6.82692 6.95377 7.11486 7.24515 7.30015 7.40804 7.48218 7.86560 8.04931 8.21975 9.05508 9.76744 10.78044 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002085 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.606458 B =13428.745994 C =13821.194954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.075 3.925 3 H 0.115 0.885 4 C 0.077 3.923 5 N -0.622 5.622 6 C 0.519 3.481 7 O -0.515 6.515 8 C -0.092 4.092 9 C -0.034 4.034 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.230 4.230 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.174 4.174 24 C 0.088 3.912 25 C 0.107 3.893 26 H 0.071 0.929 27 C -0.156 4.156 28 C -0.163 4.163 29 C -0.173 4.173 30 O -0.369 6.369 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 15.287 -21.301 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.017 3.983 3 H 0.132 0.868 4 C -0.046 4.046 5 N -0.359 5.359 6 C 0.308 3.692 7 O -0.389 6.389 8 C -0.131 4.131 9 C -0.035 4.035 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.249 4.249 13 C 0.102 3.898 14 O -0.084 6.084 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.193 4.193 24 C -0.035 4.035 25 C 0.048 3.952 26 H 0.088 0.912 27 C -0.175 4.175 28 C -0.199 4.199 29 C -0.210 4.210 30 O -0.288 6.288 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.136 0.864 46 H 0.124 0.876 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.823 14.579 -21.277 25.805 hybrid contribution -0.647 -0.624 0.827 1.222 sum -1.470 13.954 -20.449 24.800 Atomic orbital electron populations 1.22421 0.95828 1.03158 1.02994 1.22507 0.94191 0.96547 0.85081 0.86776 1.22379 1.01574 0.81178 0.99491 1.48150 1.60609 1.10521 1.16585 1.20792 0.76624 0.87536 0.84285 1.90756 1.52016 1.15828 1.80266 1.20614 1.02033 0.98105 0.92397 1.18653 0.93250 0.96712 0.94835 1.20323 0.93435 1.04778 1.02970 1.20671 0.98377 0.95462 0.94789 1.21176 0.94009 1.05681 1.04083 1.19272 0.90260 0.90128 0.90188 1.83977 1.33911 1.52200 1.38265 1.21366 0.92178 1.26473 1.06607 0.89070 1.25282 0.95923 0.97821 0.97583 1.70049 1.06533 1.40834 1.32544 0.85650 0.79151 0.79064 0.79570 1.19125 1.20184 1.20192 1.19941 0.99096 1.00686 0.99596 1.22185 1.01090 0.97473 0.82744 1.21858 0.98084 0.82286 0.92922 0.91158 1.22236 1.05884 0.98682 0.90657 1.22871 0.92099 1.02483 1.02496 1.22934 0.98824 1.02805 0.96420 1.87976 1.72206 1.25362 1.43252 0.91804 0.91108 0.91650 0.88444 0.90404 0.88515 0.88258 0.88050 0.87486 0.85601 0.92156 0.86873 0.90760 0.88112 0.86392 0.87609 0.89078 0.88846 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 8.79 37.16 0.33 -0.98 16 2 C 0.08 0.53 3.92 -26.80 -0.11 0.42 16 3 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 4 C 0.08 0.60 5.88 -3.75 -0.02 0.58 16 5 N -0.62 -7.03 2.54 -172.53 -0.44 -7.47 16 6 C 0.52 7.73 7.70 -10.99 -0.08 7.64 16 7 O -0.52 -10.15 15.50 5.56 0.09 -10.07 16 8 C -0.09 -1.24 4.20 -29.04 -0.12 -1.36 16 9 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 10 C -0.20 -3.57 9.70 -39.54 -0.38 -3.95 16 11 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 12 C -0.23 -5.25 9.17 -39.40 -0.36 -5.62 16 13 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.18 -5.31 9.76 0.06 0.00 -5.31 16 15 C -0.39 -11.20 9.49 30.89 0.29 -10.90 16 16 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 19 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 24 C 0.09 0.95 5.91 -3.53 -0.02 0.93 16 25 C 0.11 0.97 2.75 -26.58 -0.07 0.90 16 26 H 0.07 0.68 6.26 -51.93 -0.32 0.36 16 27 C -0.16 -1.25 5.71 -90.62 -0.52 -1.77 16 28 C -0.16 -1.21 9.88 -26.70 -0.26 -1.48 16 29 C -0.17 -1.24 10.20 -26.70 -0.27 -1.51 16 30 O -0.37 -3.24 8.58 -35.23 -0.30 -3.55 16 31 H 0.06 0.57 6.11 -51.93 -0.32 0.25 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.61 6.04 -51.93 -0.31 0.30 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.99 7.59 -51.93 -0.39 0.60 16 37 H 0.10 1.16 7.97 -51.93 -0.41 0.75 16 38 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.13 2.86 5.64 -52.48 -0.30 2.56 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.11 2.45 8.06 -52.48 -0.42 2.03 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.25 7.08 -51.93 -0.37 0.89 16 45 H 0.12 0.88 8.12 -51.93 -0.42 0.45 16 46 H 0.11 0.87 7.06 -51.92 -0.37 0.50 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -34.80 395.13 -9.44 -44.23 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.27 Total: 5.01 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -3.20 Total: -19.65 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.32 Total: -32.58 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.22 Total: -18.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.80 -9.44 -44.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279449760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.337 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds