Wall clock time and date at job start Wed Apr 1 2020 03:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.50760 * 2 1 4 4 C 1.52877 * 109.36937 * 120.14739 * 2 1 3 5 5 N 1.47148 * 108.60958 * 67.81843 * 4 2 1 6 6 C 1.34777 * 120.98443 * 230.50432 * 5 4 2 7 7 O 1.21281 * 120.00010 * 179.71238 * 6 5 4 8 8 C 1.50699 * 119.99857 * 359.71785 * 6 5 4 9 9 C 1.50700 * 109.46932 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96836 * 270.27391 * 9 8 6 11 11 C 1.38274 * 120.13870 * 180.23201 * 10 9 8 12 12 C 1.38120 * 120.07054 * 359.49508 * 11 10 9 13 13 C 1.38854 * 119.93208 * 0.24938 * 12 11 10 14 14 O 1.35745 * 120.07183 * 179.97438 * 13 12 11 15 15 C 1.34830 * 117.00000 * 354.46763 * 14 13 12 16 16 H 1.07993 * 119.99847 * 5.04988 * 15 14 13 17 17 C 1.38657 * 120.00052 * 185.05927 * 15 14 13 18 18 N 1.31557 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46980 * 119.99511 * 19 17 15 22 22 H 1.48493 * 109.46916 * 239.99711 * 19 17 15 23 23 C 1.38076 * 119.96553 * 89.99540 * 9 8 6 24 24 C 1.47160 * 118.03260 * 50.22541 * 5 4 2 25 25 C 1.53295 * 108.38376 * 309.72082 * 24 5 4 26 26 H 1.09001 * 109.50980 * 292.32344 * 25 24 5 27 27 C 1.52999 * 109.50993 * 172.22560 * 25 24 5 28 28 C 1.52996 * 117.50130 * 248.74534 * 27 25 24 29 29 C 1.52996 * 117.50171 * 180.08578 * 27 25 24 30 30 O 1.42953 * 109.22552 * 52.29956 * 25 24 5 31 31 H 1.09002 * 109.47143 * 180.10073 * 1 2 3 32 32 H 1.09000 * 109.47635 * 300.10297 * 1 2 3 33 33 H 1.09005 * 109.47263 * 60.10298 * 1 2 3 34 34 H 1.09006 * 109.61978 * 307.99872 * 4 2 1 35 35 H 1.08995 * 109.52648 * 187.58928 * 4 2 1 36 36 H 1.09003 * 109.47311 * 60.00189 * 8 6 5 37 37 H 1.08996 * 109.46865 * 299.99317 * 8 6 5 38 38 H 1.08003 * 119.92526 * 359.97438 * 10 9 8 39 39 H 1.07999 * 119.96585 * 179.76608 * 11 10 9 40 40 H 1.08004 * 120.03653 * 180.27767 * 12 11 10 41 41 H 0.96993 * 120.00384 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.03868 * 0.02562 * 23 9 8 43 43 H 1.08996 * 109.67721 * 69.44711 * 24 5 4 44 44 H 1.08993 * 109.67949 * 189.95683 * 24 5 4 45 45 H 1.09005 * 115.55018 * 34.41556 * 27 25 24 46 46 H 1.09009 * 117.49768 * 0.02562 * 28 27 25 47 47 H 1.08996 * 117.50167 * 145.01316 * 28 27 25 48 48 H 1.09000 * 117.50299 * 214.97842 * 29 27 25 49 49 H 1.09001 * 117.49449 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0370 -0.7243 1.2472 5 7 1.6960 -2.1512 1.1327 6 6 1.0709 -2.7978 2.1364 7 8 0.7936 -3.9729 2.0209 8 6 0.7163 -2.0608 3.4021 9 6 0.0295 -3.0034 4.3566 10 6 -1.3462 -3.1427 4.3201 11 6 -1.9804 -4.0029 5.1975 12 6 -1.2406 -4.7338 6.1064 13 6 0.1411 -4.6002 6.1421 14 8 0.8709 -5.3167 7.0346 15 6 0.1872 -6.0525 7.9340 16 1 -0.8889 -6.1183 7.8715 17 6 0.8657 -6.7247 8.9392 18 7 2.1766 -6.6448 9.0151 19 14 -0.0817 -7.7435 10.1857 20 1 -1.5338 -7.6703 9.8838 21 1 0.3684 -9.1569 10.1144 22 1 0.1670 -7.2130 11.5502 23 6 0.7748 -3.7313 5.2628 24 6 2.0522 -2.8496 -0.1127 25 6 1.5397 -2.0203 -1.2957 26 1 0.4497 -2.0285 -1.3009 27 6 2.0615 -2.6189 -2.6035 28 6 3.0941 -1.8081 -3.3891 29 6 1.6588 -1.9271 -3.9073 30 8 2.0075 -0.6758 -1.1658 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3634 0.5154 0.8890 33 1 -0.3634 0.5123 -0.8909 34 1 1.5620 -0.3034 2.1334 35 1 3.1184 -0.6100 1.3205 36 1 0.0477 -1.2331 3.1655 37 1 1.6247 -1.6738 3.8638 38 1 -1.9265 -2.5752 3.6076 39 1 -3.0550 -4.1067 5.1691 40 1 -1.7361 -5.4089 6.7885 41 1 2.6512 -7.1147 9.7185 42 1 1.8493 -3.6252 5.2882 43 1 3.1353 -2.9530 -0.1786 44 1 1.5879 -3.8356 -0.1262 45 1 2.1570 -3.7047 -2.6184 46 1 3.4021 -0.8484 -2.9740 47 1 3.8687 -2.3604 -3.9211 48 1 1.4896 -2.5576 -4.7802 49 1 1.0217 -1.0458 -3.8334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279449760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:16 Heat of formation + Delta-G solvation = -69.697327 kcal Electronic energy + Delta-G solvation = -30135.543583 eV Core-core repulsion = 26028.693228 eV Total energy + Delta-G solvation = -4106.850355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76605 -40.79686 -39.85167 -38.19841 -37.70462 -35.71862 -34.36170 -33.70532 -32.93338 -30.98587 -30.43101 -28.55398 -27.44272 -27.19137 -25.17651 -23.31402 -23.22843 -22.99863 -22.41387 -20.86519 -20.07454 -19.41135 -18.77409 -18.41353 -17.66090 -17.18517 -16.85933 -16.76869 -16.50305 -16.15231 -16.05398 -15.74524 -15.58603 -15.46331 -15.07866 -14.94557 -14.65976 -14.36269 -14.24523 -14.02797 -13.62489 -13.49936 -13.11349 -12.98446 -12.95115 -12.79406 -12.50823 -12.48745 -12.35068 -12.25358 -12.24026 -12.22621 -12.08845 -11.69847 -11.37228 -11.27311 -11.20984 -10.88482 -10.79878 -10.75742 -9.65703 -9.55155 -8.99035 -8.47927 -6.16474 0.49714 0.74410 1.33383 1.42177 1.52307 1.57394 1.84848 2.16875 2.60349 2.81537 2.94653 3.14124 3.41414 3.54523 3.64963 3.78492 3.84638 3.94589 3.99381 4.07387 4.10047 4.14079 4.23221 4.27737 4.32830 4.37941 4.41206 4.49555 4.52864 4.56483 4.59560 4.71864 4.72278 4.84624 4.86555 4.91200 5.00018 5.04566 5.07672 5.12299 5.23843 5.27934 5.29391 5.37997 5.40856 5.63602 5.71377 5.73700 6.02125 6.17983 6.19771 6.30815 6.96647 7.12116 7.78294 8.75904 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002085 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.606458 B =13428.745994 C =13821.194954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.143 0.857 4 C 0.069 3.931 5 N -0.613 5.613 6 C 0.517 3.483 7 O -0.577 6.577 8 C -0.089 4.089 9 C -0.026 4.026 10 C -0.179 4.179 11 C -0.073 4.073 12 C -0.246 4.246 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.026 4.026 18 N -0.922 5.922 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.266 1.266 23 C -0.193 4.193 24 C 0.086 3.914 25 C 0.119 3.881 26 H 0.064 0.936 27 C -0.169 4.169 28 C -0.160 4.160 29 C -0.166 4.166 30 O -0.375 6.375 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 18.061 -22.969 29.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.015 3.985 3 H 0.160 0.840 4 C -0.053 4.053 5 N -0.347 5.347 6 C 0.307 3.693 7 O -0.456 6.456 8 C -0.128 4.128 9 C -0.026 4.026 10 C -0.198 4.198 11 C -0.091 4.091 12 C -0.265 4.265 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.191 1.191 23 C -0.212 4.212 24 C -0.037 4.037 25 C 0.060 3.940 26 H 0.082 0.918 27 C -0.188 4.188 28 C -0.197 4.197 29 C -0.203 4.203 30 O -0.294 6.294 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.722 17.439 -23.009 28.999 hybrid contribution -0.104 -1.231 1.043 1.617 sum -2.827 16.208 -21.965 27.444 Atomic orbital electron populations 1.22409 0.95590 1.02012 1.04115 1.22739 0.94404 0.97448 0.83867 0.83987 1.22743 1.02576 0.78838 1.01128 1.48172 1.58852 1.11981 1.15704 1.20985 0.76392 0.86835 0.85096 1.90744 1.54966 1.18352 1.81492 1.20727 1.03690 0.97786 0.90568 1.19163 0.93775 0.95824 0.93862 1.20948 0.93580 1.03194 1.02034 1.21130 1.00235 0.94298 0.93445 1.21295 0.93284 1.06624 1.05307 1.19872 0.91725 0.91421 0.90786 1.83936 1.35608 1.54464 1.40149 1.21866 0.92866 1.26991 1.07199 0.88210 1.26631 0.97040 0.98977 0.99600 1.70195 1.08665 1.43053 1.34152 0.84504 0.78136 0.76970 0.76403 1.17494 1.19408 1.19053 1.20208 0.99240 1.01320 1.00425 1.22212 1.00952 0.97031 0.83505 1.21663 0.97542 0.82340 0.92410 0.91821 1.22275 1.06900 0.98900 0.90724 1.22888 0.92466 1.02085 1.02248 1.22980 0.98512 1.02639 0.96131 1.87983 1.72384 1.24896 1.44161 0.93962 0.89263 0.91353 0.86063 0.89508 0.83851 0.86115 0.83566 0.83656 0.86450 0.91850 0.87730 0.90656 0.90387 0.86304 0.88190 0.88164 0.87713 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.79 71.98 0.63 -1.27 16 2 C 0.07 0.76 3.92 30.55 0.12 0.88 16 3 H 0.14 0.76 8.14 -2.38 -0.02 0.74 16 4 C 0.07 0.83 5.88 86.21 0.51 1.34 16 5 N -0.61 -12.74 2.54 -818.16 -2.08 -14.82 16 6 C 0.52 14.58 7.70 87.66 0.68 15.26 16 7 O -0.58 -22.89 15.50 -3.03 -0.05 -22.94 16 8 C -0.09 -2.09 4.20 29.10 0.12 -1.97 16 9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 10 C -0.18 -5.90 9.70 22.30 0.22 -5.68 16 11 C -0.07 -2.68 10.04 22.25 0.22 -2.46 16 12 C -0.25 -11.44 9.17 22.39 0.21 -11.23 16 13 C 0.11 5.96 6.65 22.58 0.15 6.11 16 14 O -0.23 -14.87 9.76 -22.69 -0.22 -15.09 16 15 C -0.41 -25.10 9.49 67.92 0.64 -24.45 16 16 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 17 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 18 N -0.92 -58.32 13.67 21.61 0.30 -58.02 16 19 Si 1.02 44.29 29.55 68.60 2.03 46.32 16 20 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 C -0.19 -8.80 9.65 22.39 0.22 -8.59 16 24 C 0.09 1.83 5.91 86.35 0.51 2.34 16 25 C 0.12 2.02 2.75 30.69 0.08 2.10 16 26 H 0.06 1.17 6.26 -2.39 -0.01 1.16 16 27 C -0.17 -2.55 5.71 -10.80 -0.06 -2.61 16 28 C -0.16 -2.15 9.88 30.62 0.30 -1.84 16 29 C -0.17 -2.11 10.20 30.62 0.31 -1.80 16 30 O -0.38 -5.70 8.58 -148.98 -1.28 -6.98 16 31 H 0.04 0.64 6.11 -2.39 -0.01 0.62 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.12 0.89 6.04 -2.38 -0.01 0.88 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.14 2.08 7.59 -2.39 -0.02 2.06 16 37 H 0.12 2.40 7.97 -2.39 -0.02 2.38 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.12 5.52 5.64 -2.91 -0.02 5.51 16 41 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 2.03 7.08 -2.39 -0.02 2.01 16 45 H 0.12 1.73 8.12 -2.38 -0.02 1.71 16 46 H 0.10 1.47 7.06 -2.38 -0.02 1.46 16 47 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -83.81 395.13 4.89 -78.92 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.96 Total: 28.52 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 5.24 Total: -35.91 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.79 Total: -72.84 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.55 Total: -45.01 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -83.81 4.89 -78.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279449760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.223 kcal (2) G-P(sol) polarization free energy of solvation -83.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds