Wall clock time and date at job start Wed Apr 1 2020 04:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 119.99830 * 2 1 4 4 C 1.50697 * 120.00285 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.47261 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.67770 * 312.76016 * 5 4 2 7 7 C 1.53293 * 109.67838 * 192.24288 * 5 4 2 8 8 O 1.42966 * 109.22051 * 187.93360 * 7 5 4 9 9 C 1.42960 * 114.16364 * 62.58656 * 8 7 5 10 10 C 1.53301 * 109.22236 * 297.41730 * 9 8 7 11 11 N 1.47149 * 108.38489 * 52.30162 * 10 9 8 12 12 C 1.34777 * 120.98401 * 129.44329 * 11 10 9 13 13 O 1.21277 * 120.00427 * 185.90927 * 12 11 10 14 14 C 1.50704 * 119.99546 * 5.91080 * 12 11 10 15 15 C 1.53001 * 109.46794 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47375 * 54.99622 * 15 14 12 17 17 C 1.50704 * 109.46798 * 294.99352 * 15 14 12 18 18 H 1.07999 * 120.00231 * 328.91338 * 17 15 14 19 19 C 1.37884 * 119.99842 * 148.90754 * 17 15 14 20 20 N 1.31514 * 119.99706 * 4.30970 * 19 17 15 21 21 Si 1.86793 * 119.99853 * 184.30728 * 19 17 15 22 22 H 1.48500 * 109.47243 * 90.00303 * 21 19 17 23 23 H 1.48505 * 109.46974 * 209.99928 * 21 19 17 24 24 H 1.48499 * 109.47479 * 330.00225 * 21 19 17 25 25 C 1.50707 * 109.46942 * 174.99909 * 15 14 12 26 26 C 1.38239 * 119.99942 * 64.75823 * 25 15 14 27 27 C 1.38235 * 119.99767 * 179.74381 * 26 25 15 28 28 C 1.38234 * 119.99842 * 0.55007 * 27 26 25 29 29 C 1.38235 * 120.00189 * 359.70216 * 28 27 26 30 30 C 1.38230 * 119.99738 * 245.02642 * 25 15 14 31 31 H 1.08998 * 109.47570 * 239.99806 * 1 2 3 32 32 H 1.09000 * 109.47578 * 0.02562 * 1 2 3 33 33 H 1.09009 * 109.47291 * 119.99794 * 1 2 3 34 34 H 1.08994 * 109.47229 * 59.99881 * 4 2 1 35 35 H 1.09004 * 109.46927 * 299.99857 * 4 2 1 36 36 H 1.08995 * 109.51572 * 307.85913 * 7 5 4 37 37 H 1.09002 * 109.51008 * 68.01401 * 7 5 4 38 38 H 1.09000 * 109.51331 * 177.49646 * 9 8 7 39 39 H 1.08999 * 109.55961 * 57.36289 * 9 8 7 40 40 H 1.09002 * 109.67913 * 292.57876 * 10 9 8 41 41 H 1.09003 * 109.71372 * 172.04764 * 10 9 8 42 42 H 1.08997 * 109.46970 * 299.99530 * 14 12 11 43 43 H 1.08995 * 109.47493 * 59.99616 * 14 12 11 44 44 H 0.97001 * 119.99768 * 179.97438 * 20 19 17 45 45 H 1.08003 * 119.99666 * 359.97438 * 26 25 15 46 46 H 1.07993 * 119.99931 * 180.27285 * 27 26 25 47 47 H 1.08000 * 120.00002 * 179.72584 * 28 27 26 48 48 H 1.08004 * 120.00405 * 179.97438 * 29 28 27 49 49 H 1.07996 * 120.00271 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 1 3.9986 -0.2728 -0.7527 7 6 4.5302 -2.3177 -0.3065 8 8 5.9296 -2.0908 -0.1222 9 6 6.2955 -1.7476 1.2165 10 6 5.6204 -0.4261 1.6013 11 7 4.1795 -0.5442 1.3275 12 6 3.2664 -0.2216 2.2650 13 8 2.0887 -0.4261 2.0602 14 6 3.7091 0.3934 3.5677 15 6 2.4860 0.6598 4.4474 16 1 1.9204 -0.2635 4.5726 17 6 1.6129 1.6989 3.7924 18 1 2.0569 2.4672 3.1768 19 6 0.2470 1.6687 3.9790 20 7 -0.2857 0.7860 4.7954 21 14 -0.8465 2.8816 3.0721 22 1 -1.2612 2.2975 1.7713 23 1 -2.0509 3.1705 3.8914 24 1 -0.0969 4.1409 2.8327 25 6 2.9364 1.1598 5.7959 26 6 3.5897 2.3737 5.9000 27 6 3.9981 2.8347 7.1376 28 6 3.7635 2.0767 8.2694 29 6 3.1149 0.8604 8.1646 30 6 2.7013 0.4020 6.9278 31 1 -0.3634 -0.5138 0.8899 32 1 -0.3634 1.0276 -0.0005 33 1 -0.3634 -0.5138 -0.8901 34 1 1.9972 -1.8762 -0.8908 35 1 1.9972 -1.8770 0.8892 36 1 4.1974 -3.1067 0.3678 37 1 4.3424 -2.6159 -1.3379 38 1 7.3779 -1.6357 1.2808 39 1 5.9698 -2.5344 1.8969 40 1 6.0411 0.3869 1.0095 41 1 5.7777 -0.2279 2.6615 42 1 4.3838 -0.2910 4.0818 43 1 4.2258 1.3323 3.3692 44 1 -1.2465 0.7649 4.9269 45 1 3.7775 2.9634 5.0150 46 1 4.5045 3.7850 7.2195 47 1 4.0866 2.4349 9.2358 48 1 2.9319 0.2680 9.0489 49 1 2.1952 -0.5485 6.8458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356718950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:47 Heat of formation + Delta-G solvation = -69.130471 kcal Electronic energy + Delta-G solvation = -32431.187962 eV Core-core repulsion = 28324.362187 eV Total energy + Delta-G solvation = -4106.825775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.65404 -38.51272 -38.38425 -37.59233 -34.57218 -34.08968 -32.91333 -31.35858 -30.09000 -30.00561 -29.03260 -28.00091 -26.47141 -25.53551 -23.27942 -22.85819 -21.76200 -21.46624 -19.79144 -19.09370 -18.49043 -16.96650 -16.48881 -16.39921 -15.99378 -15.79766 -15.41760 -15.11853 -14.94285 -14.56616 -14.36276 -14.27869 -13.96785 -13.85924 -13.66488 -13.22224 -13.03352 -12.55714 -12.39747 -12.34949 -12.11462 -11.97123 -11.83206 -11.70821 -11.58580 -11.45472 -11.28277 -11.07093 -10.82631 -10.76313 -10.67196 -10.54957 -10.25843 -10.12774 -10.03838 -9.44102 -9.06431 -8.95517 -8.47202 -8.27087 -8.17678 -8.04110 -7.60608 -5.92386 -3.90628 2.29159 2.34543 2.72843 3.20490 3.38776 3.43495 3.50080 3.57975 3.70193 4.49072 4.54117 4.74315 4.82704 4.86243 4.97513 5.07700 5.25549 5.26451 5.37886 5.43002 5.52224 5.61198 5.66447 5.67684 5.72889 5.74037 5.76144 5.83838 5.86623 5.99532 6.02530 6.13637 6.23408 6.27508 6.31812 6.41418 6.52608 6.71168 6.75059 6.84850 6.91463 6.97865 7.04617 7.31337 7.43505 7.51447 7.84585 7.88747 7.95595 8.05779 8.39344 8.39972 8.92528 9.08926 9.71221 11.17330 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.005185 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.693714 B = 5399.006653 C = 7573.041123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.398 3.602 3 O -0.480 6.480 4 C -0.161 4.161 5 C 0.124 3.876 6 H 0.080 0.920 7 C 0.053 3.947 8 O -0.381 6.381 9 C 0.048 3.952 10 C 0.077 3.923 11 N -0.621 5.621 12 C 0.535 3.465 13 O -0.495 6.495 14 C -0.121 4.121 15 C 0.083 3.917 16 H 0.070 0.930 17 C -0.482 4.482 18 H 0.050 0.950 19 C 0.079 3.921 20 N -0.884 5.884 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.021 4.021 26 C -0.114 4.114 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.129 4.129 30 C -0.118 4.118 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.257 0.743 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.379 -7.120 -5.413 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.276 3.724 3 O -0.356 6.356 4 C -0.199 4.199 5 C 0.020 3.980 6 H 0.098 0.902 7 C -0.025 4.025 8 O -0.300 6.300 9 C -0.030 4.030 10 C -0.047 4.047 11 N -0.359 5.359 12 C 0.326 3.674 13 O -0.370 6.370 14 C -0.161 4.161 15 C 0.064 3.936 16 H 0.088 0.912 17 C -0.520 4.520 18 H 0.068 0.932 19 C -0.123 4.123 20 N -0.522 5.522 21 Si 0.710 3.290 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.021 4.021 26 C -0.132 4.132 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.147 4.147 30 C -0.136 4.136 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.979 -6.751 -5.582 13.278 hybrid contribution -1.003 0.831 -0.093 1.306 sum 8.976 -5.921 -5.675 12.159 Atomic orbital electron populations 1.22189 0.95450 1.04225 1.03230 1.23551 0.91227 0.89392 0.68192 1.90359 1.71505 1.34957 1.38798 1.22474 0.93271 0.99940 1.04224 1.21635 0.94408 0.95926 0.86002 0.90236 1.23064 0.81240 0.95931 1.02252 1.87930 1.23575 1.89922 1.28526 1.22997 1.00152 0.95708 0.84146 1.22329 0.81317 0.98168 1.02886 1.48208 1.06018 1.68080 1.13550 1.20819 0.85356 0.76160 0.85016 1.90477 1.17318 1.51564 1.77632 1.21843 1.01333 0.99608 0.93317 1.17816 0.90125 0.99435 0.86235 0.91209 1.20675 0.90960 1.11964 1.28354 0.93181 1.24742 0.97961 0.95126 0.94482 1.69923 1.11278 1.35292 1.35686 0.86784 0.80243 0.81923 0.80054 1.20353 1.21784 1.20218 1.20721 0.90828 0.93105 0.97494 1.20961 0.99169 0.96484 0.96587 1.20974 1.01628 0.99086 0.93291 1.20791 1.02902 0.96095 0.97547 1.20974 0.99967 0.96542 0.97182 1.21057 1.00081 1.00224 0.92258 0.88616 0.90939 0.90988 0.90750 0.86137 0.92521 0.88034 0.87876 0.92593 0.91003 0.88527 0.91849 0.90349 0.93306 0.86935 0.87699 0.87835 0.87693 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 10.21 36.00 0.37 -3.03 16 2 C 0.40 7.45 4.36 -29.04 -0.13 7.32 16 3 O -0.48 -10.69 15.32 -15.42 -0.24 -10.93 16 4 C -0.16 -2.39 4.65 -27.88 -0.13 -2.52 16 5 C 0.12 1.78 2.65 -67.42 -0.18 1.60 16 6 H 0.08 1.24 7.66 -51.93 -0.40 0.84 16 7 C 0.05 0.60 6.26 37.31 0.23 0.83 16 8 O -0.38 -4.60 10.74 -35.23 -0.38 -4.98 16 9 C 0.05 0.49 6.98 37.31 0.26 0.75 16 10 C 0.08 0.93 6.52 -3.53 -0.02 0.90 16 11 N -0.62 -9.73 2.96 -164.74 -0.49 -10.22 16 12 C 0.54 10.34 6.46 -10.98 -0.07 10.27 16 13 O -0.49 -10.91 8.53 -15.86 -0.14 -11.04 16 14 C -0.12 -2.31 3.44 -27.88 -0.10 -2.41 16 15 C 0.08 1.93 1.64 -92.92 -0.15 1.78 16 16 H 0.07 1.84 7.04 -51.93 -0.37 1.48 16 17 C -0.48 -12.84 6.31 -34.44 -0.22 -13.05 16 18 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 19 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 20 N -0.88 -25.25 12.90 55.43 0.71 -24.54 16 21 Si 0.88 22.41 29.54 -169.99 -5.02 17.38 16 22 H -0.28 -6.95 6.95 56.52 0.39 -6.55 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 26 C -0.11 -2.32 8.87 -39.58 -0.35 -2.67 16 27 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 28 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 29 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 30 C -0.12 -2.45 9.67 -39.58 -0.38 -2.84 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 32 H 0.07 1.42 7.96 -51.93 -0.41 1.00 16 33 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.12 1.95 6.27 -51.93 -0.33 1.63 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.07 6.07 -51.93 -0.32 0.75 16 42 H 0.06 1.04 7.42 -51.93 -0.39 0.66 16 43 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.11 2.27 7.80 -52.48 -0.41 1.86 16 46 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 48 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 49 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -32.80 390.96 -9.95 -42.75 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.64 Total: 6.22 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.66 Total: -10.54 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.23 Total: -34.75 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.75 Total: -26.95 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.80 -9.95 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356718950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.377 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds