Wall clock time and date at job start Wed Apr 1 2020 04:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 119.99830 * 2 1 4 4 C 1.50697 * 120.00285 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.47261 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.67770 * 312.76016 * 5 4 2 7 7 C 1.53293 * 109.67838 * 192.24288 * 5 4 2 8 8 O 1.42966 * 109.22051 * 187.93360 * 7 5 4 9 9 C 1.42960 * 114.16364 * 62.58656 * 8 7 5 10 10 C 1.53301 * 109.22236 * 297.41730 * 9 8 7 11 11 N 1.47149 * 108.38489 * 52.30162 * 10 9 8 12 12 C 1.34777 * 120.98401 * 129.44329 * 11 10 9 13 13 O 1.21277 * 120.00427 * 185.90927 * 12 11 10 14 14 C 1.50704 * 119.99546 * 5.91080 * 12 11 10 15 15 C 1.53001 * 109.46794 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47375 * 54.99622 * 15 14 12 17 17 C 1.50704 * 109.46798 * 294.99352 * 15 14 12 18 18 H 1.07999 * 120.00231 * 328.91338 * 17 15 14 19 19 C 1.37884 * 119.99842 * 148.90754 * 17 15 14 20 20 N 1.31514 * 119.99706 * 4.30970 * 19 17 15 21 21 Si 1.86793 * 119.99853 * 184.30728 * 19 17 15 22 22 H 1.48500 * 109.47243 * 90.00303 * 21 19 17 23 23 H 1.48505 * 109.46974 * 209.99928 * 21 19 17 24 24 H 1.48499 * 109.47479 * 330.00225 * 21 19 17 25 25 C 1.50707 * 109.46942 * 174.99909 * 15 14 12 26 26 C 1.38239 * 119.99942 * 64.75823 * 25 15 14 27 27 C 1.38235 * 119.99767 * 179.74381 * 26 25 15 28 28 C 1.38234 * 119.99842 * 0.55007 * 27 26 25 29 29 C 1.38235 * 120.00189 * 359.70216 * 28 27 26 30 30 C 1.38230 * 119.99738 * 245.02642 * 25 15 14 31 31 H 1.08998 * 109.47570 * 239.99806 * 1 2 3 32 32 H 1.09000 * 109.47578 * 0.02562 * 1 2 3 33 33 H 1.09009 * 109.47291 * 119.99794 * 1 2 3 34 34 H 1.08994 * 109.47229 * 59.99881 * 4 2 1 35 35 H 1.09004 * 109.46927 * 299.99857 * 4 2 1 36 36 H 1.08995 * 109.51572 * 307.85913 * 7 5 4 37 37 H 1.09002 * 109.51008 * 68.01401 * 7 5 4 38 38 H 1.09000 * 109.51331 * 177.49646 * 9 8 7 39 39 H 1.08999 * 109.55961 * 57.36289 * 9 8 7 40 40 H 1.09002 * 109.67913 * 292.57876 * 10 9 8 41 41 H 1.09003 * 109.71372 * 172.04764 * 10 9 8 42 42 H 1.08997 * 109.46970 * 299.99530 * 14 12 11 43 43 H 1.08995 * 109.47493 * 59.99616 * 14 12 11 44 44 H 0.97001 * 119.99768 * 179.97438 * 20 19 17 45 45 H 1.08003 * 119.99666 * 359.97438 * 26 25 15 46 46 H 1.07993 * 119.99931 * 180.27285 * 27 26 25 47 47 H 1.08000 * 120.00002 * 179.72584 * 28 27 26 48 48 H 1.08004 * 120.00405 * 179.97438 * 29 28 27 49 49 H 1.07996 * 120.00271 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 1 3.9986 -0.2728 -0.7527 7 6 4.5302 -2.3177 -0.3065 8 8 5.9296 -2.0908 -0.1222 9 6 6.2955 -1.7476 1.2165 10 6 5.6204 -0.4261 1.6013 11 7 4.1795 -0.5442 1.3275 12 6 3.2664 -0.2216 2.2650 13 8 2.0887 -0.4261 2.0602 14 6 3.7091 0.3934 3.5677 15 6 2.4860 0.6598 4.4474 16 1 1.9204 -0.2635 4.5726 17 6 1.6129 1.6989 3.7924 18 1 2.0569 2.4672 3.1768 19 6 0.2470 1.6687 3.9790 20 7 -0.2857 0.7860 4.7954 21 14 -0.8465 2.8816 3.0721 22 1 -1.2612 2.2975 1.7713 23 1 -2.0509 3.1705 3.8914 24 1 -0.0969 4.1409 2.8327 25 6 2.9364 1.1598 5.7959 26 6 3.5897 2.3737 5.9000 27 6 3.9981 2.8347 7.1376 28 6 3.7635 2.0767 8.2694 29 6 3.1149 0.8604 8.1646 30 6 2.7013 0.4020 6.9278 31 1 -0.3634 -0.5138 0.8899 32 1 -0.3634 1.0276 -0.0005 33 1 -0.3634 -0.5138 -0.8901 34 1 1.9972 -1.8762 -0.8908 35 1 1.9972 -1.8770 0.8892 36 1 4.1974 -3.1067 0.3678 37 1 4.3424 -2.6159 -1.3379 38 1 7.3779 -1.6357 1.2808 39 1 5.9698 -2.5344 1.8969 40 1 6.0411 0.3869 1.0095 41 1 5.7777 -0.2279 2.6615 42 1 4.3838 -0.2910 4.0818 43 1 4.2258 1.3323 3.3692 44 1 -1.2465 0.7649 4.9269 45 1 3.7775 2.9634 5.0150 46 1 4.5045 3.7850 7.2195 47 1 4.0866 2.4349 9.2358 48 1 2.9319 0.2680 9.0489 49 1 2.1952 -0.5485 6.8458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356718950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:46 Heat of formation + Delta-G solvation = -87.530471 kcal Electronic energy + Delta-G solvation = -32431.985846 eV Core-core repulsion = 28324.362187 eV Total energy + Delta-G solvation = -4107.623659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.94506 -40.01512 -39.65870 -38.99125 -36.01933 -35.57990 -34.23771 -33.21164 -31.50859 -31.42505 -30.45632 -29.27424 -27.66529 -27.31535 -24.76089 -24.08855 -23.19578 -22.76193 -21.32678 -20.54495 -19.89155 -18.48003 -18.23639 -17.49869 -17.23590 -17.18901 -16.67884 -16.51075 -16.17312 -16.07405 -15.92424 -15.76017 -15.46957 -15.27610 -15.05180 -14.68519 -14.44618 -14.05495 -13.99377 -13.64651 -13.58275 -13.39083 -13.29228 -13.16555 -13.14431 -12.80170 -12.64008 -12.60802 -12.48837 -12.37490 -12.21898 -11.84723 -11.76388 -11.67782 -11.31116 -11.13267 -10.96397 -10.55078 -10.41700 -9.82200 -9.54811 -9.39505 -9.19192 -8.05652 -6.05522 0.77194 0.83382 1.27171 1.29512 1.32434 1.39966 1.99314 2.12726 2.43700 2.84895 3.17585 3.30822 3.33636 3.66513 3.86046 4.00626 4.08968 4.16156 4.22844 4.25372 4.31257 4.34969 4.35356 4.38132 4.51049 4.52510 4.57414 4.62062 4.67342 4.69408 4.71145 4.83278 4.84912 4.89293 4.92598 4.97917 5.13120 5.19606 5.27967 5.36342 5.50976 5.61574 5.68803 5.78133 5.83123 5.94710 6.11475 6.16955 6.40525 6.46606 6.52227 6.95200 6.99007 7.48342 7.56624 9.03239 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.005185 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.693714 B = 5399.006653 C = 7573.041123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.392 3.608 3 O -0.525 6.525 4 C -0.152 4.152 5 C 0.120 3.880 6 H 0.067 0.933 7 C 0.062 3.938 8 O -0.390 6.390 9 C 0.051 3.949 10 C 0.069 3.931 11 N -0.618 5.618 12 C 0.526 3.474 13 O -0.532 6.532 14 C -0.114 4.114 15 C 0.091 3.909 16 H 0.031 0.969 17 C -0.471 4.471 18 H 0.027 0.973 19 C 0.039 3.961 20 N -0.909 5.909 21 Si 0.915 3.085 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.282 1.282 25 C -0.045 4.045 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.147 4.147 29 C -0.127 4.127 30 C -0.138 4.138 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.254 0.746 45 H 0.105 0.895 46 H 0.137 0.863 47 H 0.143 0.857 48 H 0.134 0.866 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.665 -7.897 -5.009 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.273 3.727 3 O -0.405 6.405 4 C -0.190 4.190 5 C 0.016 3.984 6 H 0.085 0.915 7 C -0.016 4.016 8 O -0.309 6.309 9 C -0.026 4.026 10 C -0.054 4.054 11 N -0.354 5.354 12 C 0.317 3.683 13 O -0.410 6.410 14 C -0.154 4.154 15 C 0.072 3.928 16 H 0.050 0.950 17 C -0.509 4.509 18 H 0.046 0.954 19 C -0.160 4.160 20 N -0.549 5.549 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.208 1.208 25 C -0.045 4.045 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.165 4.165 29 C -0.145 4.145 30 C -0.156 4.156 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.154 0.846 47 H 0.161 0.839 48 H 0.152 0.848 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.303 -7.541 -5.197 15.338 hybrid contribution -1.622 1.103 -0.192 1.971 sum 10.681 -6.439 -5.389 13.586 Atomic orbital electron populations 1.22195 0.95402 1.02755 1.04631 1.24175 0.91763 0.90378 0.66336 1.90332 1.72306 1.36795 1.41106 1.22336 0.93229 0.97728 1.05672 1.21800 0.94563 0.97285 0.84716 0.91549 1.23085 0.80539 0.93870 1.04076 1.87929 1.23689 1.89779 1.29459 1.23124 1.01625 0.94310 0.83505 1.22621 0.79268 0.99803 1.03685 1.48219 1.07059 1.66766 1.13371 1.20846 0.85436 0.76313 0.85724 1.90467 1.18850 1.53264 1.78457 1.21683 0.99983 1.00399 0.93324 1.17555 0.90880 0.96453 0.87929 0.95043 1.20762 0.91408 1.11554 1.27207 0.95447 1.25181 0.99023 0.96380 0.95399 1.70008 1.10996 1.36673 1.37193 0.86257 0.79455 0.80490 0.79495 1.20352 1.21132 1.20791 1.20561 0.92838 0.94340 0.96799 1.20992 1.00036 0.96014 0.97757 1.21331 1.00644 1.00219 0.92372 1.21250 1.01131 0.95097 0.98992 1.21301 0.98964 0.97260 0.96935 1.21088 1.01065 1.00139 0.93345 0.90350 0.93809 0.86233 0.86188 0.87397 0.91889 0.85253 0.84876 0.92064 0.90832 0.87632 0.89116 0.90244 0.93696 0.87689 0.84562 0.83894 0.84829 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.96 10.21 71.23 0.73 -6.23 16 2 C 0.39 15.01 4.36 29.10 0.13 15.14 16 3 O -0.53 -24.41 15.32 19.02 0.29 -24.12 16 4 C -0.15 -4.39 4.65 29.85 0.14 -4.25 16 5 C 0.12 3.30 2.65 44.97 0.12 3.42 16 6 H 0.07 2.03 7.66 -2.39 -0.02 2.01 16 7 C 0.06 1.23 6.26 72.08 0.45 1.68 16 8 O -0.39 -8.27 10.74 -148.98 -1.60 -9.87 16 9 C 0.05 0.91 6.98 72.08 0.50 1.41 16 10 C 0.07 1.57 6.52 86.36 0.56 2.13 16 11 N -0.62 -19.18 2.96 -793.51 -2.35 -21.53 16 12 C 0.53 20.89 6.46 87.66 0.57 21.46 16 13 O -0.53 -24.54 8.53 17.46 0.15 -24.39 16 14 C -0.11 -4.48 3.44 29.85 0.10 -4.37 16 15 C 0.09 4.42 1.64 -12.28 -0.02 4.40 16 16 H 0.03 1.76 7.04 -2.39 -0.02 1.74 16 17 C -0.47 -26.33 6.31 25.60 0.16 -26.17 16 18 H 0.03 1.62 7.82 -2.91 -0.02 1.60 16 19 C 0.04 2.28 5.45 84.66 0.46 2.74 16 20 N -0.91 -54.26 12.90 21.45 0.28 -53.98 16 21 Si 0.91 47.69 29.54 68.60 2.03 49.72 16 22 H -0.28 -14.31 6.95 99.48 0.69 -13.62 16 23 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 25 C -0.04 -2.00 4.77 -19.86 -0.09 -2.09 16 26 C -0.13 -5.25 8.87 22.27 0.20 -5.06 16 27 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 28 C -0.15 -4.58 10.05 22.27 0.22 -4.36 16 29 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 30 C -0.14 -5.78 9.67 22.27 0.22 -5.56 16 31 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.04 1.79 7.96 -2.39 -0.02 1.77 16 33 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 34 H 0.12 2.32 8.09 -2.39 -0.02 2.30 16 35 H 0.11 3.51 6.27 -2.38 -0.01 3.49 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 2.18 6.07 -2.39 -0.01 2.16 16 42 H 0.09 2.98 7.42 -2.39 -0.02 2.97 16 43 H 0.08 3.07 7.86 -2.39 -0.02 3.05 16 44 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.10 4.30 7.80 -2.91 -0.02 4.28 16 46 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 48 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 49 H 0.10 4.28 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -76.50 390.96 4.60 -71.89 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.92 Total: 26.21 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.89 Total: -13.93 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.07 Total: -75.52 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.16 Total: -58.38 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -76.50 4.60 -71.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356718950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.638 kcal (2) G-P(sol) polarization free energy of solvation -76.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds