Wall clock time and date at job start Wed Apr 1 2020 04:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 119.99594 * 2 1 4 4 C 1.50698 * 120.00515 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47494 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.70374 * 42.03854 * 5 4 2 7 7 C 1.53716 * 109.74498 * 162.80742 * 5 4 2 8 8 O 1.42958 * 109.14256 * 172.16285 * 7 5 4 9 9 C 1.42960 * 114.17015 * 297.28850 * 8 7 5 10 10 C 1.53293 * 109.22148 * 62.58384 * 9 8 7 11 11 N 1.47146 * 108.38460 * 307.69753 * 10 9 8 12 12 C 1.34782 * 120.98388 * 230.51075 * 11 10 9 13 13 O 1.21279 * 120.00300 * 184.70665 * 12 11 10 14 14 C 1.50699 * 119.99564 * 4.71502 * 12 11 10 15 15 C 1.53002 * 109.46988 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.47155 * 54.99777 * 15 14 12 17 17 C 1.50698 * 109.47044 * 295.00006 * 15 14 12 18 18 H 1.07993 * 120.00430 * 329.10184 * 17 15 14 19 19 C 1.37881 * 120.00053 * 149.10640 * 17 15 14 20 20 N 1.31514 * 119.99993 * 5.24464 * 19 17 15 21 21 Si 1.86803 * 119.99945 * 185.24961 * 19 17 15 22 22 H 1.48492 * 109.47296 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46953 * 119.99821 * 21 19 17 24 24 H 1.48500 * 109.46996 * 239.99884 * 21 19 17 25 25 C 1.50700 * 109.47493 * 174.99769 * 15 14 12 26 26 C 1.38233 * 119.99909 * 243.19567 * 25 15 14 27 27 C 1.38237 * 119.99765 * 180.02562 * 26 25 15 28 28 C 1.38237 * 120.00001 * 359.94722 * 27 26 25 29 29 C 1.38237 * 120.00018 * 0.02562 * 28 27 26 30 30 C 1.38231 * 119.99634 * 63.20767 * 25 15 14 31 31 H 1.08997 * 109.47237 * 270.00052 * 1 2 3 32 32 H 1.08997 * 109.47266 * 30.00000 * 1 2 3 33 33 H 1.08999 * 109.46944 * 149.99730 * 1 2 3 34 34 H 1.09007 * 109.46830 * 59.99776 * 4 2 1 35 35 H 1.08999 * 109.46922 * 300.00174 * 4 2 1 36 36 H 1.09002 * 109.65407 * 52.19919 * 7 5 4 37 37 H 1.08999 * 109.44352 * 291.99953 * 7 5 4 38 38 H 1.08998 * 109.51325 * 302.66027 * 9 8 7 39 39 H 1.09000 * 109.51123 * 182.50222 * 9 8 7 40 40 H 1.09000 * 109.68195 * 187.97185 * 10 9 8 41 41 H 1.09005 * 109.71205 * 67.43734 * 10 9 8 42 42 H 1.08996 * 109.47556 * 59.99692 * 14 12 11 43 43 H 1.08997 * 109.47030 * 299.99504 * 14 12 11 44 44 H 0.97003 * 119.99948 * 179.97438 * 20 19 17 45 45 H 1.07995 * 120.00568 * 359.97438 * 26 25 15 46 46 H 1.08005 * 120.00047 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.00025 * 179.72465 * 28 27 26 48 48 H 1.08003 * 119.99732 * 179.97438 * 29 28 27 49 49 H 1.07999 * 120.00420 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 1 3.9866 -0.2094 0.6880 7 6 4.5278 -2.2896 0.4273 8 8 5.9297 -2.0739 0.2489 9 6 6.3186 -1.8439 -1.1075 10 6 5.6474 -0.5624 -1.6146 11 7 4.2021 -0.6623 -1.3571 12 6 3.3051 -0.4228 -2.3342 13 8 2.1187 -0.4264 -2.0825 14 6 3.7764 -0.1508 -3.7395 15 6 2.5670 0.0863 -4.6461 16 1 1.9529 0.8857 -4.2312 17 6 1.7516 -1.1778 -4.7367 18 1 2.2367 -2.1398 -4.6624 19 6 0.3862 -1.1063 -4.9147 20 7 -0.1915 0.0591 -5.1086 21 14 -0.6431 -2.6648 -4.8803 22 1 0.2397 -3.8360 -4.6482 23 1 -1.6430 -2.5735 -3.7861 24 1 -1.3442 -2.8237 -6.1797 25 6 3.0398 0.4788 -6.0221 26 6 2.7295 1.7266 -6.5297 27 6 3.1628 2.0864 -7.7922 28 6 3.9073 1.1989 -8.5465 29 6 4.2180 -0.0487 -8.0386 30 6 3.7835 -0.4090 -6.7767 31 1 -0.3633 0.0000 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.9972 -1.8762 -0.8909 35 1 1.9972 -1.8770 0.8891 36 1 4.2087 -3.1343 -0.1834 37 1 4.3225 -2.5001 1.4769 38 1 6.0061 -2.6869 -1.7237 39 1 7.4016 -1.7337 -1.1620 40 1 5.8231 -0.4548 -2.6849 41 1 6.0555 0.2999 -1.0871 42 1 4.3419 -1.0077 -4.1054 43 1 4.4134 0.7337 -3.7442 44 1 -1.1520 0.1094 -5.2341 45 1 2.1480 2.4200 -5.9405 46 1 2.9201 3.0612 -8.1890 47 1 4.2420 1.4783 -9.5345 48 1 4.7993 -0.7423 -8.6281 49 1 4.0254 -1.3841 -6.3803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356718956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:55 Heat of formation + Delta-G solvation = -72.529514 kcal Electronic energy + Delta-G solvation = -32239.106240 eV Core-core repulsion = 28132.133072 eV Total energy + Delta-G solvation = -4106.973168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.61632 -38.50933 -38.44022 -37.67638 -34.56947 -34.09834 -32.91537 -31.40084 -30.15626 -30.00822 -29.03733 -28.02611 -26.47069 -25.57398 -23.30412 -22.88553 -21.75400 -21.45794 -19.79343 -19.16613 -18.48337 -16.98780 -16.54343 -16.35437 -16.06471 -15.84306 -15.32390 -15.13896 -14.95899 -14.62546 -14.37685 -14.27012 -13.96715 -13.86616 -13.83799 -13.20074 -13.10392 -12.57694 -12.39127 -12.38301 -12.19593 -11.98431 -11.81080 -11.72547 -11.63045 -11.43152 -11.28016 -11.14371 -10.94974 -10.81392 -10.73407 -10.59241 -10.26844 -10.11832 -10.06093 -9.47713 -9.11425 -9.04531 -8.54895 -8.32768 -8.16883 -8.04288 -7.61110 -5.97377 -3.97548 2.28966 2.34491 2.71354 3.21240 3.30443 3.38310 3.39793 3.45494 3.71753 4.45684 4.46120 4.74095 4.82051 4.86327 4.98562 5.07869 5.24663 5.27821 5.34681 5.44364 5.51617 5.58905 5.65642 5.66028 5.72287 5.73261 5.75179 5.83526 5.85507 5.88672 6.03135 6.09767 6.14869 6.26265 6.30989 6.41141 6.51818 6.57402 6.73690 6.84432 6.91725 6.99760 7.03990 7.31105 7.43171 7.52004 7.81218 7.85649 7.93802 8.04385 8.26588 8.34110 8.91961 9.02191 9.63930 11.12319 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.004805 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.978590 B = 5826.099773 C = 7269.963753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.402 3.598 3 O -0.487 6.487 4 C -0.165 4.165 5 C 0.124 3.876 6 H 0.081 0.919 7 C 0.052 3.948 8 O -0.381 6.381 9 C 0.047 3.953 10 C 0.077 3.923 11 N -0.623 5.623 12 C 0.530 3.470 13 O -0.490 6.490 14 C -0.121 4.121 15 C 0.082 3.918 16 H 0.070 0.930 17 C -0.489 4.489 18 H 0.050 0.950 19 C 0.078 3.922 20 N -0.878 5.878 21 Si 0.884 3.116 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.288 1.288 25 C -0.020 4.020 26 C -0.116 4.116 27 C -0.128 4.128 28 C -0.155 4.155 29 C -0.132 4.132 30 C -0.116 4.116 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.258 0.742 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 -2.997 7.114 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.280 3.720 3 O -0.364 6.364 4 C -0.202 4.202 5 C 0.020 3.980 6 H 0.099 0.901 7 C -0.025 4.025 8 O -0.300 6.300 9 C -0.031 4.031 10 C -0.046 4.046 11 N -0.361 5.361 12 C 0.321 3.679 13 O -0.365 6.365 14 C -0.161 4.161 15 C 0.063 3.937 16 H 0.088 0.912 17 C -0.527 4.527 18 H 0.068 0.932 19 C -0.125 4.125 20 N -0.515 5.515 21 Si 0.712 3.288 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.214 1.214 25 C -0.021 4.021 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.173 4.173 29 C -0.150 4.150 30 C -0.134 4.134 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.574 -2.371 7.349 12.300 hybrid contribution -0.960 -0.997 -0.521 1.479 sum 8.613 -3.368 6.828 11.496 Atomic orbital electron populations 1.22105 0.95264 1.05189 1.02333 1.23633 0.91246 0.89425 0.67665 1.90327 1.71668 1.35108 1.39272 1.22476 0.93441 0.99808 1.04520 1.21716 0.94121 0.97121 0.85031 0.90082 1.23144 0.81183 0.96192 1.01999 1.87923 1.23347 1.92142 1.26556 1.23003 0.99936 0.96647 0.83499 1.22323 0.81176 0.98442 1.02708 1.48235 1.06040 1.71865 1.09985 1.20845 0.85602 0.74928 0.86543 1.90475 1.16615 1.48578 1.80792 1.21822 1.01347 1.00863 0.92031 1.17816 0.90353 0.99603 0.85887 0.91208 1.20679 0.91524 0.90683 1.49800 0.93215 1.24803 0.97891 0.95366 0.94442 1.69935 1.10224 1.23347 1.48016 0.86685 0.80640 0.84074 0.77379 1.20029 1.21021 1.21423 1.20705 0.90944 0.91271 0.99196 1.21079 0.99775 0.96978 0.95562 1.20986 0.99381 0.98928 0.95323 1.20793 1.02142 0.95085 0.99320 1.20963 1.01445 0.96313 0.96318 1.20918 0.99100 0.99183 0.94163 0.90411 0.90057 0.89971 0.85903 0.90481 0.92409 0.88067 0.92473 0.87917 0.88490 0.91033 0.90558 0.91615 0.93207 0.86903 0.87676 0.87833 0.87717 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 10.24 36.00 0.37 -2.68 16 2 C 0.40 7.12 4.42 -29.04 -0.13 6.99 16 3 O -0.49 -10.17 15.62 -15.10 -0.24 -10.41 16 4 C -0.16 -2.46 4.68 -27.88 -0.13 -2.59 16 5 C 0.12 1.78 2.70 -67.20 -0.18 1.60 16 6 H 0.08 1.26 7.44 -51.93 -0.39 0.87 16 7 C 0.05 0.61 6.24 37.53 0.23 0.85 16 8 O -0.38 -4.70 10.74 -35.23 -0.38 -5.08 16 9 C 0.05 0.49 6.98 37.31 0.26 0.75 16 10 C 0.08 0.94 6.55 -3.54 -0.02 0.91 16 11 N -0.62 -9.78 3.01 -164.50 -0.49 -10.27 16 12 C 0.53 10.24 6.83 -10.98 -0.08 10.16 16 13 O -0.49 -10.90 8.56 -15.54 -0.13 -11.03 16 14 C -0.12 -2.28 3.31 -27.88 -0.09 -2.37 16 15 C 0.08 1.91 1.63 -92.92 -0.15 1.76 16 16 H 0.07 1.90 7.06 -51.93 -0.37 1.53 16 17 C -0.49 -12.49 6.38 -34.44 -0.22 -12.71 16 18 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 19 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 20 N -0.88 -24.92 12.91 55.43 0.72 -24.20 16 21 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C -0.02 -0.45 4.77 -104.63 -0.50 -0.95 16 26 C -0.12 -2.46 9.67 -39.58 -0.38 -2.84 16 27 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 28 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 29 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 30 C -0.12 -2.29 8.86 -39.58 -0.35 -2.64 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 34 H 0.12 2.12 6.19 -51.92 -0.32 1.79 16 35 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.08 6.04 -51.93 -0.31 0.76 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.32 7.47 -51.93 -0.39 0.93 16 43 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.11 2.45 7.95 -52.49 -0.42 2.04 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 47 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 48 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 49 H 0.11 2.12 7.75 -52.49 -0.41 1.71 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -32.27 391.73 -9.92 -42.19 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.62 Total: 7.06 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.66 Total: -10.35 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.22 Total: -34.47 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.75 Total: -26.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.27 -9.92 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356718956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.339 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds