Wall clock time and date at job start Wed Apr 1 2020 04:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20753 * 120.00206 * 2 1 4 4 C 1.50700 * 119.99861 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47058 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.68194 * 301.86725 * 5 4 2 7 7 C 1.53287 * 109.68232 * 62.42609 * 5 4 2 8 8 O 1.42962 * 109.22576 * 172.02347 * 7 5 4 9 9 C 1.42955 * 114.16898 * 297.41989 * 8 7 5 10 10 C 1.52884 * 109.29605 * 62.44850 * 9 8 7 11 11 N 1.47154 * 109.68173 * 181.35372 * 5 4 2 12 12 C 1.34780 * 120.98405 * 9.71722 * 11 5 4 13 13 O 1.21281 * 119.99729 * 354.86326 * 12 11 5 14 14 C 1.50697 * 120.00277 * 174.58462 * 12 11 5 15 15 C 1.52992 * 109.47321 * 179.97438 * 14 12 11 16 16 H 1.08994 * 109.47325 * 305.00266 * 15 14 12 17 17 C 1.50710 * 109.46962 * 65.00110 * 15 14 12 18 18 H 1.07999 * 119.99638 * 34.25668 * 17 15 14 19 19 C 1.37879 * 119.99875 * 214.25490 * 17 15 14 20 20 N 1.31508 * 120.00011 * 353.42746 * 19 17 15 21 21 Si 1.86802 * 119.99794 * 173.43225 * 19 17 15 22 22 H 1.48503 * 109.46875 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47335 * 119.99786 * 21 19 17 24 24 H 1.48500 * 109.46847 * 240.00066 * 21 19 17 25 25 C 1.50702 * 109.47375 * 184.99839 * 15 14 12 26 26 C 1.38234 * 120.00172 * 298.72994 * 25 15 14 27 27 C 1.38229 * 119.99978 * 179.78616 * 26 25 15 28 28 C 1.38234 * 120.00079 * 0.43691 * 27 26 25 29 29 C 1.38241 * 119.99785 * 359.81645 * 28 27 26 30 30 C 1.38224 * 120.00187 * 359.97307 * 29 28 27 31 31 H 1.09005 * 109.46924 * 239.99889 * 1 2 3 32 32 H 1.09005 * 109.47391 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.47487 * 119.99721 * 1 2 3 34 34 H 1.09005 * 109.46969 * 59.99727 * 4 2 1 35 35 H 1.09001 * 109.47075 * 299.99801 * 4 2 1 36 36 H 1.09001 * 109.51649 * 291.94997 * 7 5 4 37 37 H 1.09001 * 109.51410 * 52.10150 * 7 5 4 38 38 H 1.08996 * 109.51865 * 182.50114 * 9 8 7 39 39 H 1.08996 * 109.51346 * 302.60723 * 9 8 7 40 40 H 1.09002 * 109.61876 * 188.12169 * 10 9 8 41 41 H 1.08994 * 109.52741 * 67.69907 * 10 9 8 42 42 H 1.08996 * 109.46887 * 300.00292 * 14 12 11 43 43 H 1.09004 * 109.46898 * 60.00169 * 14 12 11 44 44 H 0.97006 * 120.00431 * 179.97438 * 20 19 17 45 45 H 1.08002 * 119.99526 * 359.97438 * 26 25 15 46 46 H 1.08002 * 120.00195 * 180.27241 * 27 26 25 47 47 H 1.08000 * 120.00415 * 179.83629 * 28 27 26 48 48 H 1.08006 * 119.99741 * 179.97438 * 29 28 27 49 49 H 1.08000 * 120.00737 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 1 4.0262 -0.4256 -0.8727 7 6 4.1507 -0.2747 1.2783 8 8 5.5751 -0.1822 1.3583 9 6 6.2393 -1.4446 1.4503 10 6 5.9595 -2.2561 0.1851 11 7 4.5050 -2.2969 -0.0344 12 6 3.8689 -3.4647 -0.2539 13 8 2.6591 -3.4903 -0.3348 14 6 4.6613 -4.7376 -0.4051 15 6 3.7054 -5.9081 -0.6433 16 1 2.9706 -5.9466 0.1608 17 6 2.9989 -5.7195 -1.9610 18 1 3.5143 -5.2547 -2.7884 19 6 1.6944 -6.1404 -2.1103 20 7 1.1091 -6.8210 -1.1492 21 14 0.7586 -5.7441 -3.6777 22 1 1.6351 -4.9735 -4.5960 23 1 0.3392 -7.0070 -4.3365 24 1 -0.4424 -4.9361 -3.3462 25 6 4.4865 -7.1967 -0.6721 26 6 5.4634 -7.3915 -1.6304 27 6 6.1828 -8.5716 -1.6540 28 6 5.9191 -9.5606 -0.7249 29 6 4.9384 -9.3678 0.2302 30 6 4.2221 -8.1860 0.2566 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3634 1.0277 0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 1.9970 -1.8763 -0.8908 35 1 1.9971 -1.8771 0.8892 36 1 3.7215 0.7270 1.2562 37 1 3.7717 -0.8148 2.1459 38 1 7.3127 -1.2848 1.5517 39 1 5.8686 -1.9887 2.3189 40 1 6.3405 -3.2699 0.3088 41 1 6.4462 -1.7818 -0.6670 42 1 5.3404 -4.6442 -1.2525 43 1 5.2363 -4.9176 0.5033 44 1 0.1912 -7.1168 -1.2539 45 1 5.6667 -6.6204 -2.3588 46 1 6.9491 -8.7221 -2.4000 47 1 6.4793 -10.4837 -0.7450 48 1 4.7321 -10.1407 0.9559 49 1 3.4562 -8.0352 1.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356718959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:59 Heat of formation + Delta-G solvation = -75.117532 kcal Electronic energy + Delta-G solvation = -31503.391396 eV Core-core repulsion = 27396.306003 eV Total energy + Delta-G solvation = -4107.085393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.59428 -39.06729 -38.47661 -37.84030 -34.59677 -34.11952 -32.89500 -31.42919 -30.57749 -30.04247 -29.11504 -28.13571 -26.38642 -25.60238 -23.42328 -22.83881 -21.82488 -21.48670 -19.81645 -19.53127 -18.53947 -16.87613 -16.57325 -16.43588 -16.21415 -15.81597 -15.41602 -15.33464 -14.95873 -14.83343 -14.45975 -14.43296 -14.21181 -13.97130 -13.86868 -13.25217 -13.16274 -12.61543 -12.55826 -12.37000 -12.24574 -12.22020 -12.02191 -11.94573 -11.67344 -11.50781 -11.41445 -11.13679 -10.95063 -10.76761 -10.75119 -10.59506 -10.28740 -10.14976 -10.09886 -9.69146 -9.47420 -9.08049 -8.55195 -8.31464 -8.13452 -8.07674 -7.64158 -5.99854 -3.99083 2.03535 2.25542 2.31096 3.13755 3.30564 3.33815 3.39363 3.41829 3.78160 4.30283 4.45873 4.71020 4.73160 4.86835 4.98560 5.04817 5.14142 5.16768 5.26474 5.34293 5.41600 5.45236 5.57038 5.62919 5.63989 5.67568 5.69279 5.79933 5.80991 5.84884 5.98824 6.02073 6.09354 6.18625 6.22888 6.28632 6.38008 6.49150 6.71770 6.81109 6.88614 7.00900 7.08016 7.28104 7.39426 7.48121 7.58955 7.79682 7.81971 7.90839 8.00688 8.32055 8.89374 9.00968 9.62863 11.10000 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.004179 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.649575 B = 6698.869770 C = 8773.055220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.348 3.652 3 O -0.473 6.473 4 C -0.165 4.165 5 C 0.128 3.872 6 H 0.078 0.922 7 C 0.046 3.954 8 O -0.380 6.380 9 C 0.044 3.956 10 C 0.078 3.922 11 N -0.631 5.631 12 C 0.521 3.479 13 O -0.489 6.489 14 C -0.122 4.122 15 C 0.081 3.919 16 H 0.072 0.928 17 C -0.491 4.491 18 H 0.050 0.950 19 C 0.080 3.920 20 N -0.880 5.880 21 Si 0.884 3.116 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.284 1.284 25 C -0.022 4.022 26 C -0.117 4.117 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.128 4.128 30 C -0.117 4.117 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.258 0.742 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 7.024 5.357 11.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.226 3.774 3 O -0.349 6.349 4 C -0.202 4.202 5 C 0.024 3.976 6 H 0.096 0.904 7 C -0.031 4.031 8 O -0.298 6.298 9 C -0.033 4.033 10 C -0.046 4.046 11 N -0.370 5.370 12 C 0.311 3.689 13 O -0.362 6.362 14 C -0.162 4.162 15 C 0.062 3.938 16 H 0.090 0.910 17 C -0.528 4.528 18 H 0.069 0.931 19 C -0.123 4.123 20 N -0.517 5.517 21 Si 0.713 3.287 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.210 1.210 25 C -0.022 4.022 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.174 4.174 29 C -0.146 4.146 30 C -0.135 4.135 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.158 0.842 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.130 0.870 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.774 7.608 5.348 11.505 hybrid contribution -0.760 -0.391 -1.045 1.350 sum 6.014 7.217 4.303 10.333 Atomic orbital electron populations 1.22283 0.94542 1.04269 1.04990 1.25164 0.92435 0.90698 0.69109 1.90330 1.71879 1.35677 1.37005 1.22838 0.92962 0.95532 1.08828 1.21572 0.91802 0.85248 0.98963 0.90414 1.23314 0.81162 1.02672 0.95940 1.87958 1.19021 1.28374 1.94476 1.22917 0.98164 0.85491 0.96751 1.22241 0.81729 1.02239 0.98401 1.48449 1.07520 1.06387 1.74649 1.20961 0.88882 0.84033 0.75070 1.90704 1.13675 1.84749 1.47036 1.21868 0.99400 0.94083 1.00895 1.17843 0.91276 0.84366 1.00317 0.90997 1.20711 0.96846 1.39007 0.96274 0.93145 1.24784 0.97447 0.94226 0.95863 1.69919 1.12939 1.36294 1.32522 0.86670 0.80225 0.77935 0.83871 1.19995 1.21402 1.21007 1.20721 0.91706 0.98422 0.91393 1.20931 0.96779 0.97066 0.98752 1.20969 1.00365 0.94697 0.98943 1.20800 1.00119 0.98834 0.97605 1.20993 0.97166 0.97484 0.98987 1.21077 0.99064 0.93738 0.99614 0.88942 0.90472 0.88764 0.84199 0.87347 0.86593 0.93262 0.87950 0.92771 0.88463 0.91057 0.90422 0.91747 0.93180 0.87017 0.87686 0.87812 0.87652 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 10.26 36.00 0.37 -1.80 16 2 C 0.35 4.65 7.00 -29.04 -0.20 4.44 16 3 O -0.47 -7.22 14.60 6.00 0.09 -7.13 16 4 C -0.16 -2.44 3.59 -27.89 -0.10 -2.54 16 5 C 0.13 1.88 2.81 -67.43 -0.19 1.69 16 6 H 0.08 1.20 8.06 -51.93 -0.42 0.79 16 7 C 0.05 0.63 5.87 37.31 0.22 0.85 16 8 O -0.38 -5.17 10.74 -35.23 -0.38 -5.55 16 9 C 0.04 0.48 6.97 37.10 0.26 0.74 16 10 C 0.08 0.91 6.49 -3.74 -0.02 0.89 16 11 N -0.63 -9.51 3.03 -165.00 -0.50 -10.01 16 12 C 0.52 9.55 7.38 -10.99 -0.08 9.46 16 13 O -0.49 -10.52 10.54 5.56 0.06 -10.46 16 14 C -0.12 -2.20 3.39 -27.89 -0.09 -2.30 16 15 C 0.08 1.81 1.67 -92.92 -0.16 1.66 16 16 H 0.07 1.85 6.98 -51.93 -0.36 1.49 16 17 C -0.49 -12.47 6.45 -34.43 -0.22 -12.69 16 18 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 19 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 20 N -0.88 -24.56 12.87 55.43 0.71 -23.84 16 21 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 26 C -0.12 -2.26 8.86 -39.59 -0.35 -2.61 16 27 C -0.13 -2.28 10.05 -39.59 -0.40 -2.67 16 28 C -0.16 -2.62 10.05 -39.58 -0.40 -3.02 16 29 C -0.13 -2.29 10.05 -39.59 -0.40 -2.69 16 30 C -0.12 -2.38 9.67 -39.59 -0.38 -2.76 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.14 2.43 6.15 -51.93 -0.32 2.11 16 35 H 0.11 1.66 7.37 -51.93 -0.38 1.28 16 36 H 0.12 1.62 5.97 -51.93 -0.31 1.31 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.02 6.07 -51.93 -0.32 0.70 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.32 7.64 -51.93 -0.40 0.92 16 43 H 0.06 1.01 7.43 -51.93 -0.39 0.63 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.11 2.08 7.69 -52.49 -0.40 1.67 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 49 H 0.11 2.35 7.95 -52.49 -0.42 1.94 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -30.64 391.99 -9.36 -40.00 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.48 Total: 7.08 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.75 Total: -12.26 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.21 Total: -33.86 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.23 Total: -23.14 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.64 -9.36 -40.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356718959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.119 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds