Wall clock time and date at job start Wed Apr 1 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.51218 * 2 1 4 4 C 1.53296 * 109.55433 * 239.86668 * 2 1 3 5 5 N 1.47149 * 108.40325 * 187.69694 * 4 2 1 6 6 C 1.34782 * 120.99162 * 230.59850 * 5 4 2 7 7 O 1.21580 * 120.00323 * 174.21971 * 6 5 4 8 8 C 1.47642 * 119.99582 * 354.21430 * 6 5 4 9 9 C 1.40005 * 119.90088 * 328.42004 * 8 6 5 10 10 C 1.36315 * 120.10956 * 179.75744 * 9 8 6 11 11 C 1.40886 * 119.89212 * 0.51583 * 10 9 8 12 12 C 1.41106 * 120.10354 * 179.71733 * 11 10 9 13 13 H 1.08008 * 119.99499 * 205.54468 * 12 11 10 14 14 C 1.40223 * 120.00332 * 25.54482 * 12 11 10 15 15 N 1.30646 * 119.99922 * 16.74972 * 14 12 11 16 16 Si 1.86795 * 120.00107 * 196.74464 * 14 12 11 17 17 H 1.48497 * 109.47137 * 90.00189 * 16 14 12 18 18 H 1.48498 * 109.47119 * 210.00075 * 16 14 12 19 19 H 1.48502 * 109.47294 * 330.00126 * 16 14 12 20 20 C 1.40890 * 119.78897 * 359.73963 * 11 10 9 21 21 C 1.36312 * 119.89411 * 359.97438 * 20 11 10 22 22 C 1.47174 * 118.02322 * 50.58104 * 5 4 2 23 23 C 1.53192 * 108.38575 * 309.59269 * 22 5 4 24 24 C 1.53081 * 109.46090 * 172.18155 * 23 22 5 25 25 C 1.53192 * 109.03202 * 176.79376 * 24 23 22 26 26 C 1.53105 * 109.14606 * 303.12249 * 25 24 23 27 27 O 1.42922 * 109.45953 * 57.62966 * 26 25 24 28 28 C 1.42925 * 114.07099 * 298.83714 * 27 26 25 29 29 O 1.42866 * 109.41533 * 52.12108 * 23 22 5 30 30 H 1.08996 * 109.47069 * 299.89617 * 1 2 3 31 31 H 1.09004 * 109.47010 * 59.88942 * 1 2 3 32 32 H 1.08994 * 109.47554 * 179.89178 * 1 2 3 33 33 H 1.08998 * 109.68015 * 307.42970 * 4 2 1 34 34 H 1.09006 * 109.67852 * 67.93473 * 4 2 1 35 35 H 1.08005 * 119.94707 * 0.02562 * 9 8 6 36 36 H 1.08009 * 120.05612 * 180.27794 * 10 9 8 37 37 H 0.96996 * 119.99994 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.05186 * 180.02562 * 20 11 10 39 39 H 1.08001 * 119.94583 * 179.97438 * 21 20 11 40 40 H 1.09001 * 109.67900 * 189.87357 * 22 5 4 41 41 H 1.08991 * 109.68522 * 69.31654 * 22 5 4 42 42 H 1.09006 * 109.53730 * 296.65999 * 24 23 22 43 43 H 1.08997 * 109.54441 * 56.92560 * 24 23 22 44 44 H 1.09006 * 109.52529 * 63.01569 * 25 24 23 45 45 H 1.08997 * 109.52645 * 183.22047 * 25 24 23 46 46 H 1.08996 * 109.47334 * 177.62680 * 26 25 24 47 47 H 1.09004 * 109.46940 * 297.63288 * 26 25 24 48 48 H 1.09004 * 109.48222 * 301.04634 * 28 27 26 49 49 H 1.09001 * 109.47768 * 181.02031 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0431 -0.7252 -1.2493 5 7 3.5025 -0.8742 -1.1335 6 6 4.3201 -0.5001 -2.1376 7 8 5.5258 -0.5324 -1.9839 8 6 3.7517 -0.0512 -3.4241 9 6 2.5401 -0.5872 -3.8768 10 6 2.0089 -0.1722 -5.0616 11 6 2.6866 0.7899 -5.8362 12 6 2.1437 1.2184 -7.0662 13 1 2.7932 1.6058 -7.8373 14 6 0.7612 1.1411 -7.2873 15 7 -0.0544 0.9915 -6.2778 16 14 0.0857 1.2522 -9.0253 17 1 0.0048 -0.1092 -9.6129 18 1 -1.2695 1.8582 -8.9918 19 1 0.9849 2.0958 -9.8529 20 6 3.9082 1.3225 -5.3790 21 6 4.4286 0.9056 -4.1901 22 6 4.0428 -1.4435 0.1115 23 6 3.4304 -0.6869 1.2944 24 6 3.8215 -1.3813 2.6014 25 6 3.2718 -0.5725 3.7806 26 6 3.8053 0.8603 3.6989 27 8 3.4307 1.4371 2.4461 28 6 3.9554 0.7502 1.3079 29 8 2.0076 -0.6760 1.1659 30 1 -0.3633 0.5122 0.8909 31 1 -0.3633 0.5156 -0.8890 32 1 -0.3634 -1.0276 -0.0019 33 1 1.5782 -1.7085 -1.3199 34 1 1.8027 -0.1409 -2.1376 35 1 2.0233 -1.3277 -3.2842 36 1 1.0720 -0.5830 -5.4078 37 1 -1.0107 0.9376 -6.4308 38 1 4.4310 2.0606 -5.9692 39 1 5.3652 1.3130 -3.8391 40 1 5.1270 -1.3318 0.1259 41 1 3.7811 -2.4995 0.1761 42 1 3.4000 -2.3864 2.6205 43 1 4.9076 -1.4385 2.6731 44 1 2.1827 -0.5587 3.7368 45 1 3.5941 -1.0283 4.7168 46 1 3.3841 1.4518 4.5117 47 1 4.8920 0.8487 3.7832 48 1 5.0441 0.7390 1.3600 49 1 3.6402 1.2609 0.3980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366470918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:48 Heat of formation + Delta-G solvation = -97.818681 kcal Electronic energy + Delta-G solvation = -31749.721269 eV Core-core repulsion = 27641.651480 eV Total energy + Delta-G solvation = -4108.069789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.87750 -39.08095 -37.62432 -37.05564 -34.48784 -34.13987 -33.83766 -32.21226 -30.52238 -29.85998 -29.55820 -27.02999 -26.27232 -25.38281 -25.17398 -22.80696 -21.87615 -21.17327 -20.90936 -19.73681 -18.89336 -17.56141 -16.94721 -16.72910 -16.29168 -16.04716 -15.61947 -15.38521 -15.24290 -14.92358 -14.43455 -14.16700 -14.09662 -13.81712 -13.45850 -13.22187 -12.89199 -12.82846 -12.70742 -12.44961 -12.30167 -12.22048 -12.06951 -11.93378 -11.74225 -11.65123 -11.32523 -11.30403 -11.20056 -11.10833 -10.97242 -10.66210 -10.63894 -10.35024 -10.08856 -10.06452 -9.57048 -9.36759 -9.33181 -9.01818 -8.17653 -7.71926 -7.57776 -7.05206 -4.63748 2.21369 2.89931 2.93938 2.95599 2.96691 3.29095 3.56662 3.67438 3.73390 3.83266 4.45338 4.53549 4.58023 4.62667 4.77446 4.90493 5.08767 5.15455 5.18618 5.26154 5.34862 5.41570 5.44736 5.49796 5.54778 5.62624 5.68536 5.73265 5.79556 5.83658 5.87906 5.94415 5.98096 6.08064 6.10556 6.14727 6.22816 6.28539 6.72075 6.76706 6.80702 6.99500 7.02798 7.08047 7.32164 7.39523 7.54760 7.74302 7.81615 7.97054 8.03964 8.36267 8.60128 8.70712 8.88032 9.86576 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.002895 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.970331 B = 9668.615908 C =10380.724207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.068 3.932 5 N -0.622 5.622 6 C 0.578 3.422 7 O -0.568 6.568 8 C -0.282 4.282 9 C -0.074 4.074 10 C -0.175 4.175 11 C 0.128 3.872 12 C -0.443 4.443 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.773 5.773 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.236 4.236 21 C -0.025 4.025 22 C 0.093 3.907 23 C 0.078 3.922 24 C -0.105 4.105 25 C -0.150 4.150 26 C 0.058 3.942 27 O -0.372 6.372 28 C 0.041 3.959 29 O -0.360 6.360 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -3.168 14.503 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.054 4.054 5 N -0.356 5.356 6 C 0.374 3.626 7 O -0.449 6.449 8 C -0.287 4.287 9 C -0.092 4.092 10 C -0.194 4.194 11 C 0.125 3.875 12 C -0.471 4.471 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.397 5.397 16 Si 0.737 3.263 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.255 4.255 21 C -0.044 4.044 22 C -0.031 4.031 23 C 0.037 3.963 24 C -0.143 4.143 25 C -0.188 4.188 26 C -0.019 4.019 27 O -0.290 6.290 28 C -0.036 4.036 29 O -0.279 6.279 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.313 -3.109 14.746 15.074 hybrid contribution -0.146 -0.183 -0.881 0.912 sum -0.459 -3.292 13.865 14.258 Atomic orbital electron populations 1.21691 0.92226 1.02897 1.02928 1.22592 0.95442 0.96033 0.84786 0.91529 1.23050 0.80223 1.01735 1.00438 1.48010 1.06844 1.64907 1.15838 1.18763 0.85449 0.74871 0.83518 1.90634 1.15001 1.56244 1.83056 1.18802 1.01092 1.11404 0.97377 1.20748 0.93578 0.98357 0.96561 1.20998 1.02066 1.00348 0.96017 1.17780 0.90229 0.87839 0.91669 1.19844 0.92165 1.35075 1.00019 0.89764 1.26070 0.97218 0.92061 0.99287 1.69719 1.05185 1.32170 1.32602 0.86207 0.78594 0.79768 0.81706 1.18963 1.20004 1.18320 1.20709 1.00875 1.05901 0.98058 1.20274 0.96306 0.94200 0.93637 1.22049 1.00559 0.97031 0.83442 1.22329 0.82958 0.95678 0.95367 1.21530 1.00907 0.99684 0.92212 1.22114 1.02739 0.95940 0.97984 1.22599 0.98626 0.93997 0.86684 1.87980 1.74790 1.52758 1.13522 1.23114 0.98046 0.92644 0.89798 1.87925 1.19068 1.77095 1.43826 0.91743 0.90326 0.91872 0.91347 0.85768 0.88191 0.86100 0.90246 0.88374 0.88544 0.88424 0.91181 0.90382 0.90333 0.90133 0.90963 0.88999 0.93451 0.92224 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.57 37.16 0.36 -1.33 16 2 C 0.07 0.99 3.02 -26.58 -0.08 0.91 16 3 H 0.07 1.03 6.22 -51.93 -0.32 0.71 16 4 C 0.07 1.07 4.16 -3.53 -0.01 1.05 16 5 N -0.62 -10.72 2.60 -173.51 -0.45 -11.17 16 6 C 0.58 12.13 7.43 -12.42 -0.09 12.04 16 7 O -0.57 -13.20 16.19 5.29 0.09 -13.11 16 8 C -0.28 -6.29 5.42 -104.73 -0.57 -6.86 16 9 C -0.07 -1.59 7.32 -39.61 -0.29 -1.88 16 10 C -0.18 -4.15 8.63 -39.27 -0.34 -4.49 16 11 C 0.13 3.18 5.57 -106.80 -0.59 2.58 16 12 C -0.44 -10.80 9.05 -37.75 -0.34 -11.14 16 13 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 14 C 0.07 1.70 5.15 -17.31 -0.09 1.61 16 15 N -0.77 -17.91 10.95 55.56 0.61 -17.30 16 16 Si 0.91 17.02 29.59 -169.99 -5.03 11.99 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 C -0.24 -5.57 9.73 -39.27 -0.38 -5.96 16 21 C -0.02 -0.57 9.53 -39.61 -0.38 -0.95 16 22 C 0.09 1.36 5.32 -3.57 -0.02 1.34 16 23 C 0.08 1.02 0.71 -90.48 -0.06 0.96 16 24 C -0.11 -1.08 5.03 -26.59 -0.13 -1.21 16 25 C -0.15 -1.41 5.99 -26.58 -0.16 -1.57 16 26 C 0.06 0.59 6.84 37.21 0.25 0.84 16 27 O -0.37 -5.19 10.71 -42.39 -0.45 -5.64 16 28 C 0.04 0.58 5.10 37.16 0.19 0.77 16 29 O -0.36 -5.10 9.30 -42.39 -0.39 -5.50 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 34 H 0.12 2.17 4.51 -51.93 -0.23 1.93 16 35 H 0.10 1.91 5.57 -52.48 -0.29 1.62 16 36 H 0.12 2.91 6.18 -52.48 -0.32 2.59 16 37 H 0.29 5.97 8.29 -40.82 -0.34 5.64 16 38 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 39 H 0.10 2.12 7.93 -52.49 -0.42 1.71 16 40 H 0.10 1.50 7.06 -51.93 -0.37 1.13 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 1.62 6.07 -51.93 -0.32 1.31 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -27.80 379.14 -9.95 -37.75 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.29 Total: 10.56 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.74 Total: -13.30 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.16 Total: -28.48 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.76 Total: -24.25 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.80 -9.95 -37.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366470918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.066 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds