Wall clock time and date at job start Wed Apr 1 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.50937 * 2 1 4 4 C 1.53292 * 109.51073 * 239.90585 * 2 1 3 5 5 N 1.47151 * 108.42615 * 187.71591 * 4 2 1 6 6 C 1.34775 * 120.99399 * 230.53617 * 5 4 2 7 7 O 1.21591 * 119.99705 * 174.58519 * 6 5 4 8 8 C 1.47636 * 120.00329 * 354.58387 * 6 5 4 9 9 C 1.40016 * 119.89579 * 327.07654 * 8 6 5 10 10 C 1.36315 * 120.10945 * 179.72058 * 9 8 6 11 11 C 1.40892 * 119.88983 * 0.52168 * 10 9 8 12 12 C 1.41103 * 120.10540 * 179.76550 * 11 10 9 13 13 H 1.07995 * 120.00263 * 204.73205 * 12 11 10 14 14 C 1.40232 * 119.99712 * 24.73416 * 12 11 10 15 15 N 1.30645 * 119.99984 * 17.40773 * 14 12 11 16 16 Si 1.86797 * 119.99858 * 197.39774 * 14 12 11 17 17 H 1.48498 * 109.47277 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46925 * 120.00382 * 16 14 12 19 19 H 1.48495 * 109.47245 * 240.00205 * 16 14 12 20 20 C 1.40894 * 119.79190 * 359.74861 * 11 10 9 21 21 C 1.36314 * 119.89121 * 359.97438 * 20 11 10 22 22 C 1.47176 * 118.00503 * 50.55323 * 5 4 2 23 23 C 1.53197 * 108.36335 * 309.54877 * 22 5 4 24 24 C 1.53098 * 109.39888 * 292.20968 * 23 22 5 25 25 C 1.53191 * 109.05186 * 183.28511 * 24 23 22 26 26 C 1.53097 * 109.14277 * 56.87600 * 25 24 23 27 27 O 1.42901 * 109.43356 * 302.33824 * 26 25 24 28 28 C 1.42914 * 114.09905 * 61.18960 * 27 26 25 29 29 O 1.42855 * 109.40109 * 52.22394 * 23 22 5 30 30 H 1.08995 * 109.47251 * 180.09714 * 1 2 3 31 31 H 1.09005 * 109.46798 * 300.09978 * 1 2 3 32 32 H 1.08997 * 109.47219 * 60.09485 * 1 2 3 33 33 H 1.09004 * 109.67585 * 67.97652 * 4 2 1 34 34 H 1.09004 * 109.67009 * 307.44899 * 4 2 1 35 35 H 1.07999 * 119.94376 * 359.97438 * 9 8 6 36 36 H 1.07994 * 120.05529 * 180.25350 * 10 9 8 37 37 H 0.97001 * 120.00110 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.05291 * 180.02562 * 20 11 10 39 39 H 1.08006 * 119.94569 * 179.97438 * 21 20 11 40 40 H 1.09009 * 109.68187 * 189.82977 * 22 5 4 41 41 H 1.08999 * 109.68542 * 69.27509 * 22 5 4 42 42 H 1.08998 * 109.54330 * 303.15210 * 24 23 22 43 43 H 1.08999 * 109.54029 * 63.33083 * 24 23 22 44 44 H 1.09002 * 109.52559 * 296.97754 * 25 24 23 45 45 H 1.09002 * 109.53342 * 176.77935 * 25 24 23 46 46 H 1.09001 * 109.47840 * 182.35127 * 26 25 24 47 47 H 1.08994 * 109.47936 * 62.33075 * 26 25 24 48 48 H 1.09001 * 109.47881 * 58.98854 * 28 27 26 49 49 H 1.09002 * 109.48007 * 179.00382 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 -1.2501 5 7 3.5013 -0.8748 -1.1357 6 6 4.3184 -0.5018 -2.1405 7 8 5.5243 -0.5416 -1.9901 8 6 3.7492 -0.0448 -3.4239 9 6 2.5476 -0.5928 -3.8889 10 6 2.0153 -0.1700 -5.0705 11 6 2.6819 0.8122 -5.8294 12 6 2.1374 1.2495 -7.0555 13 1 2.7822 1.6688 -7.8136 14 6 0.7591 1.1398 -7.2894 15 7 -0.0613 0.9621 -6.2884 16 14 0.0962 1.2479 -9.0325 17 1 1.2226 1.4493 -9.9789 18 1 -0.6148 -0.0112 -9.3706 19 1 -0.8462 2.3910 -9.1336 20 6 3.8937 1.3565 -5.3600 21 6 4.4153 0.9315 -4.1745 22 6 4.0418 -1.4451 0.1088 23 6 3.4314 -0.6872 1.2920 24 6 3.9562 0.7510 1.2999 25 6 3.4061 1.4773 2.5314 26 6 3.8058 0.7037 3.7906 27 8 3.3097 -0.6337 3.7046 28 6 3.8260 -1.3776 2.5990 29 8 2.0086 -0.6763 1.1653 30 1 -0.3633 -1.0276 0.0017 31 1 -0.3633 0.5154 0.8891 32 1 -0.3633 0.5123 -0.8908 33 1 1.8018 -0.1392 -2.1378 34 1 1.5763 -1.7075 -1.3211 35 1 2.0396 -1.3488 -3.3086 36 1 1.0863 -0.5904 -5.4263 37 1 -1.0146 0.8859 -6.4502 38 1 4.4080 2.1099 -5.9382 39 1 5.3444 1.3479 -3.8141 40 1 5.1263 -1.3352 0.1223 41 1 3.7785 -2.5008 0.1736 42 1 5.0455 0.7414 1.3387 43 1 3.6280 1.2638 0.3958 44 1 2.3194 1.5318 2.4669 45 1 3.8203 2.4845 2.5758 46 1 3.3818 1.1929 4.6676 47 1 4.8922 0.6836 3.8754 48 1 4.9126 -1.4274 2.6701 49 1 3.4141 -2.3866 2.6157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366470920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:56 Heat of formation + Delta-G solvation = -98.571178 kcal Electronic energy + Delta-G solvation = -31741.395228 eV Core-core repulsion = 27633.292808 eV Total energy + Delta-G solvation = -4108.102420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.89299 -39.09806 -37.72173 -37.06942 -34.42946 -34.00803 -33.64959 -32.54055 -30.51236 -29.93039 -29.56696 -27.02301 -26.28416 -25.50676 -25.01847 -22.64201 -21.95695 -21.33586 -20.97334 -19.61083 -18.90581 -17.57756 -16.91306 -16.70591 -16.40512 -15.94499 -15.75070 -15.35428 -15.19683 -15.06402 -14.62022 -14.16705 -14.03499 -13.79625 -13.43597 -13.04032 -12.97015 -12.87869 -12.71605 -12.42463 -12.32056 -12.22989 -12.03345 -11.97156 -11.77879 -11.75414 -11.32024 -11.30104 -11.20880 -11.02465 -10.92393 -10.76316 -10.66506 -10.33315 -10.09830 -9.88527 -9.59787 -9.51454 -9.36071 -9.01423 -8.18966 -7.73265 -7.59570 -7.07222 -4.64763 2.21067 2.87365 2.92436 2.94352 2.98092 3.25896 3.50759 3.66605 3.72310 3.85166 4.43530 4.53050 4.59346 4.68817 4.79802 4.91880 5.06398 5.11717 5.20607 5.23417 5.29922 5.40380 5.44309 5.47308 5.50940 5.61882 5.67459 5.73344 5.83007 5.86308 5.87233 5.93477 5.99405 6.07311 6.09931 6.17045 6.21108 6.26677 6.71059 6.76130 6.79541 6.98309 7.00824 7.07054 7.28250 7.38188 7.53996 7.73915 7.80516 7.96583 8.02742 8.35064 8.58884 8.69562 8.88104 9.84314 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.002879 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.084287 B = 9723.145137 C =10434.844789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.064 0.936 4 C 0.070 3.930 5 N -0.618 5.618 6 C 0.579 3.421 7 O -0.569 6.569 8 C -0.283 4.283 9 C -0.072 4.072 10 C -0.176 4.176 11 C 0.127 3.873 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.772 5.772 16 Si 0.912 3.088 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.237 4.237 21 C -0.025 4.025 22 C 0.092 3.908 23 C 0.076 3.924 24 C -0.145 4.145 25 C -0.151 4.151 26 C 0.060 3.940 27 O -0.371 6.371 28 C 0.081 3.919 29 O -0.357 6.357 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -1.432 13.480 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.082 0.918 4 C -0.053 4.053 5 N -0.352 5.352 6 C 0.375 3.625 7 O -0.449 6.449 8 C -0.287 4.287 9 C -0.091 4.091 10 C -0.195 4.195 11 C 0.124 3.876 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.146 4.146 15 N -0.396 5.396 16 Si 0.736 3.264 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.256 4.256 21 C -0.045 4.045 22 C -0.031 4.031 23 C 0.035 3.965 24 C -0.183 4.183 25 C -0.188 4.188 26 C -0.016 4.016 27 O -0.289 6.289 28 C 0.003 3.997 29 O -0.276 6.276 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.142 -1.628 13.872 13.968 hybrid contribution -0.126 0.314 -1.196 1.243 sum -0.268 -1.315 12.676 12.747 Atomic orbital electron populations 1.21706 0.92263 1.03074 1.02807 1.22587 0.95336 0.95942 0.85110 0.91779 1.22987 0.80281 1.01709 1.00308 1.47942 1.06777 1.64800 1.15711 1.18750 0.85452 0.74887 0.83453 1.90635 1.15004 1.56270 1.83034 1.18799 1.01475 1.10802 0.97613 1.20714 0.93594 0.98265 0.96557 1.21002 1.02187 1.00155 0.96171 1.17780 0.90197 0.88042 0.91575 1.19868 0.92487 1.34084 1.00560 0.89738 1.26080 0.97176 0.92032 0.99344 1.69730 1.05038 1.31966 1.32840 0.86180 0.79553 0.78924 0.81767 1.18093 1.19374 1.19661 1.20698 1.01129 1.05635 0.98146 1.20262 0.96245 0.94218 0.93737 1.22013 1.00583 0.96855 0.83697 1.22395 0.82827 0.95622 0.95632 1.22121 1.01160 0.95768 0.99253 1.22109 1.02582 0.99187 0.94947 1.22587 0.98032 0.83069 0.97949 1.87967 1.69702 1.24470 1.46751 1.22484 0.98111 0.95588 0.83510 1.87987 1.19081 1.77098 1.43474 0.91726 0.91826 0.90363 0.85942 0.91343 0.88315 0.86064 0.90287 0.88403 0.88624 0.88424 0.91326 0.90852 0.90477 0.90559 0.90990 0.88935 0.93346 0.91508 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.57 37.16 0.36 -1.31 16 2 C 0.07 0.95 3.02 -26.58 -0.08 0.87 16 3 H 0.06 0.94 6.19 -51.93 -0.32 0.62 16 4 C 0.07 1.09 4.17 -3.54 -0.01 1.07 16 5 N -0.62 -10.61 2.60 -173.50 -0.45 -11.06 16 6 C 0.58 12.13 7.41 -12.43 -0.09 12.03 16 7 O -0.57 -13.22 16.22 5.29 0.09 -13.13 16 8 C -0.28 -6.28 5.39 -104.73 -0.56 -6.84 16 9 C -0.07 -1.56 7.31 -39.61 -0.29 -1.85 16 10 C -0.18 -4.16 8.63 -39.27 -0.34 -4.50 16 11 C 0.13 3.15 5.58 -106.80 -0.60 2.55 16 12 C -0.44 -10.74 9.05 -37.75 -0.34 -11.08 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 14 C 0.07 1.69 5.15 -17.31 -0.09 1.60 16 15 N -0.77 -17.79 10.93 55.56 0.61 -17.18 16 16 Si 0.91 16.92 29.60 -169.99 -5.03 11.89 16 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 C -0.24 -5.57 9.73 -39.27 -0.38 -5.95 16 21 C -0.03 -0.58 9.53 -39.61 -0.38 -0.96 16 22 C 0.09 1.34 5.32 -3.57 -0.02 1.32 16 23 C 0.08 0.99 0.71 -90.47 -0.06 0.93 16 24 C -0.15 -1.88 4.33 -26.58 -0.12 -1.99 16 25 C -0.15 -1.65 5.99 -26.58 -0.16 -1.81 16 26 C 0.06 0.61 6.84 37.21 0.25 0.86 16 27 O -0.37 -4.56 10.70 -42.17 -0.45 -5.02 16 28 C 0.08 0.90 5.80 37.15 0.22 1.12 16 29 O -0.36 -5.05 9.32 -42.17 -0.39 -5.45 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.12 2.13 4.56 -51.93 -0.24 1.89 16 34 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 35 H 0.10 1.89 5.70 -52.49 -0.30 1.59 16 36 H 0.12 2.92 6.15 -52.49 -0.32 2.59 16 37 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 38 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.10 2.10 7.95 -52.48 -0.42 1.68 16 40 H 0.10 1.49 7.06 -51.92 -0.37 1.12 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.16 6.03 -51.93 -0.31 0.84 16 44 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -27.88 379.29 -9.91 -37.79 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.30 Total: 10.38 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.70 Total: -13.94 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.16 Total: -28.24 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.76 Total: -23.59 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.88 -9.91 -37.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366470920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.778 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds