Wall clock time and date at job start Wed Apr 1 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.50937 * 2 1 4 4 C 1.53292 * 109.51073 * 239.90585 * 2 1 3 5 5 N 1.47151 * 108.42615 * 187.71591 * 4 2 1 6 6 C 1.34775 * 120.99399 * 230.53617 * 5 4 2 7 7 O 1.21591 * 119.99705 * 174.58519 * 6 5 4 8 8 C 1.47636 * 120.00329 * 354.58387 * 6 5 4 9 9 C 1.40016 * 119.89579 * 327.07654 * 8 6 5 10 10 C 1.36315 * 120.10945 * 179.72058 * 9 8 6 11 11 C 1.40892 * 119.88983 * 0.52168 * 10 9 8 12 12 C 1.41103 * 120.10540 * 179.76550 * 11 10 9 13 13 H 1.07995 * 120.00263 * 204.73205 * 12 11 10 14 14 C 1.40232 * 119.99712 * 24.73416 * 12 11 10 15 15 N 1.30645 * 119.99984 * 17.40773 * 14 12 11 16 16 Si 1.86797 * 119.99858 * 197.39774 * 14 12 11 17 17 H 1.48498 * 109.47277 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46925 * 120.00382 * 16 14 12 19 19 H 1.48495 * 109.47245 * 240.00205 * 16 14 12 20 20 C 1.40894 * 119.79190 * 359.74861 * 11 10 9 21 21 C 1.36314 * 119.89121 * 359.97438 * 20 11 10 22 22 C 1.47176 * 118.00503 * 50.55323 * 5 4 2 23 23 C 1.53197 * 108.36335 * 309.54877 * 22 5 4 24 24 C 1.53098 * 109.39888 * 292.20968 * 23 22 5 25 25 C 1.53191 * 109.05186 * 183.28511 * 24 23 22 26 26 C 1.53097 * 109.14277 * 56.87600 * 25 24 23 27 27 O 1.42901 * 109.43356 * 302.33824 * 26 25 24 28 28 C 1.42914 * 114.09905 * 61.18960 * 27 26 25 29 29 O 1.42855 * 109.40109 * 52.22394 * 23 22 5 30 30 H 1.08995 * 109.47251 * 180.09714 * 1 2 3 31 31 H 1.09005 * 109.46798 * 300.09978 * 1 2 3 32 32 H 1.08997 * 109.47219 * 60.09485 * 1 2 3 33 33 H 1.09004 * 109.67585 * 67.97652 * 4 2 1 34 34 H 1.09004 * 109.67009 * 307.44899 * 4 2 1 35 35 H 1.07999 * 119.94376 * 359.97438 * 9 8 6 36 36 H 1.07994 * 120.05529 * 180.25350 * 10 9 8 37 37 H 0.97001 * 120.00110 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.05291 * 180.02562 * 20 11 10 39 39 H 1.08006 * 119.94569 * 179.97438 * 21 20 11 40 40 H 1.09009 * 109.68187 * 189.82977 * 22 5 4 41 41 H 1.08999 * 109.68542 * 69.27509 * 22 5 4 42 42 H 1.08998 * 109.54330 * 303.15210 * 24 23 22 43 43 H 1.08999 * 109.54029 * 63.33083 * 24 23 22 44 44 H 1.09002 * 109.52559 * 296.97754 * 25 24 23 45 45 H 1.09002 * 109.53342 * 176.77935 * 25 24 23 46 46 H 1.09001 * 109.47840 * 182.35127 * 26 25 24 47 47 H 1.08994 * 109.47936 * 62.33075 * 26 25 24 48 48 H 1.09001 * 109.47881 * 58.98854 * 28 27 26 49 49 H 1.09002 * 109.48007 * 179.00382 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 -1.2501 5 7 3.5013 -0.8748 -1.1357 6 6 4.3184 -0.5018 -2.1405 7 8 5.5243 -0.5416 -1.9901 8 6 3.7492 -0.0448 -3.4239 9 6 2.5476 -0.5928 -3.8889 10 6 2.0153 -0.1700 -5.0705 11 6 2.6819 0.8122 -5.8294 12 6 2.1374 1.2495 -7.0555 13 1 2.7822 1.6688 -7.8136 14 6 0.7591 1.1398 -7.2894 15 7 -0.0613 0.9621 -6.2884 16 14 0.0962 1.2479 -9.0325 17 1 1.2226 1.4493 -9.9789 18 1 -0.6148 -0.0112 -9.3706 19 1 -0.8462 2.3910 -9.1336 20 6 3.8937 1.3565 -5.3600 21 6 4.4153 0.9315 -4.1745 22 6 4.0418 -1.4451 0.1088 23 6 3.4314 -0.6872 1.2920 24 6 3.9562 0.7510 1.2999 25 6 3.4061 1.4773 2.5314 26 6 3.8058 0.7037 3.7906 27 8 3.3097 -0.6337 3.7046 28 6 3.8260 -1.3776 2.5990 29 8 2.0086 -0.6763 1.1653 30 1 -0.3633 -1.0276 0.0017 31 1 -0.3633 0.5154 0.8891 32 1 -0.3633 0.5123 -0.8908 33 1 1.8018 -0.1392 -2.1378 34 1 1.5763 -1.7075 -1.3211 35 1 2.0396 -1.3488 -3.3086 36 1 1.0863 -0.5904 -5.4263 37 1 -1.0146 0.8859 -6.4502 38 1 4.4080 2.1099 -5.9382 39 1 5.3444 1.3479 -3.8141 40 1 5.1263 -1.3352 0.1223 41 1 3.7785 -2.5008 0.1736 42 1 5.0455 0.7414 1.3387 43 1 3.6280 1.2638 0.3958 44 1 2.3194 1.5318 2.4669 45 1 3.8203 2.4845 2.5758 46 1 3.3818 1.1929 4.6676 47 1 4.8922 0.6836 3.8754 48 1 4.9126 -1.4274 2.6701 49 1 3.4141 -2.3866 2.6157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366470920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:55 Heat of formation + Delta-G solvation = -112.896231 kcal Electronic energy + Delta-G solvation = -31742.016409 eV Core-core repulsion = 27633.292808 eV Total energy + Delta-G solvation = -4108.723601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.09376 -40.51226 -39.02592 -38.63195 -35.92065 -35.59589 -34.79425 -33.49921 -32.13826 -31.38205 -31.08897 -28.39251 -27.65811 -26.68874 -26.21426 -23.83054 -23.32610 -22.85855 -22.42642 -20.84214 -20.32787 -19.36169 -18.23520 -17.93488 -17.59224 -17.31383 -16.93514 -16.73628 -16.26284 -16.21309 -15.97223 -15.71354 -15.44071 -15.05101 -14.87894 -14.53559 -14.36338 -14.08384 -14.01866 -13.80052 -13.66273 -13.40489 -13.34637 -13.26786 -12.99733 -12.93437 -12.83203 -12.74175 -12.60246 -12.35011 -12.15093 -11.98095 -11.79387 -11.77179 -11.40622 -11.31735 -11.10134 -11.02682 -10.70972 -10.41687 -9.62095 -9.52697 -9.36048 -8.78582 -6.48230 0.46513 1.10621 1.38214 1.42026 1.54703 1.86813 2.01959 2.17105 2.47013 2.70048 2.96738 3.47765 3.56701 3.62885 3.67709 3.78060 3.86133 3.94386 4.01614 4.10935 4.29691 4.31084 4.33410 4.37442 4.39224 4.42834 4.54424 4.58446 4.60062 4.68882 4.71990 4.83522 4.89132 4.91153 4.92044 4.97369 5.02026 5.09820 5.13627 5.20869 5.26617 5.27688 5.43315 5.58033 5.77190 5.94035 5.98144 6.10160 6.20685 6.25393 6.38338 6.53436 6.77264 6.87271 7.24593 8.16107 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.002879 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.084287 B = 9723.145137 C =10434.844789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.074 3.926 3 H 0.053 0.947 4 C 0.069 3.931 5 N -0.611 5.611 6 C 0.577 3.423 7 O -0.597 6.597 8 C -0.291 4.291 9 C -0.059 4.059 10 C -0.193 4.193 11 C 0.102 3.898 12 C -0.473 4.473 13 H 0.083 0.917 14 C 0.040 3.960 15 N -0.794 5.794 16 Si 0.984 3.016 17 H -0.260 1.260 18 H -0.261 1.261 19 H -0.263 1.263 20 C -0.251 4.251 21 C -0.034 4.034 22 C 0.089 3.911 23 C 0.078 3.922 24 C -0.145 4.145 25 C -0.145 4.145 26 C 0.058 3.942 27 O -0.386 6.386 28 C 0.082 3.918 29 O -0.360 6.360 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.297 0.703 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.111 0.889 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -2.069 14.684 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.071 0.929 4 C -0.053 4.053 5 N -0.343 5.343 6 C 0.372 3.628 7 O -0.481 6.481 8 C -0.295 4.295 9 C -0.078 4.078 10 C -0.212 4.212 11 C 0.099 3.901 12 C -0.500 4.500 13 H 0.101 0.899 14 C -0.179 4.179 15 N -0.418 5.418 16 Si 0.804 3.196 17 H -0.183 1.183 18 H -0.185 1.185 19 H -0.188 1.188 20 C -0.270 4.270 21 C -0.053 4.053 22 C -0.034 4.034 23 C 0.037 3.963 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.018 4.018 27 O -0.304 6.304 28 C 0.004 3.996 29 O -0.279 6.279 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.199 -2.271 15.121 15.338 hybrid contribution 0.209 0.524 -1.471 1.575 sum -0.990 -1.748 13.650 13.797 Atomic orbital electron populations 1.21689 0.90501 1.03797 1.03352 1.22527 0.96605 0.95000 0.84282 0.92918 1.23046 0.79276 1.02411 1.00575 1.47903 1.07229 1.63458 1.15692 1.18547 0.85295 0.75106 0.83826 1.90611 1.16097 1.57767 1.83585 1.19052 1.01582 1.10465 0.98437 1.20867 0.93090 0.98027 0.95796 1.20996 1.02368 1.00716 0.97123 1.18103 0.90873 0.88755 0.92366 1.20102 0.93737 1.35478 1.00711 0.89915 1.26851 0.96688 0.91154 1.03240 1.69739 1.05855 1.31471 1.34704 0.85112 0.78718 0.79283 0.76462 1.18309 1.18537 1.18752 1.20827 1.01352 1.06207 0.98662 1.20402 0.96534 0.94628 0.93770 1.22237 1.00294 0.97952 0.82899 1.22488 0.82182 0.95617 0.95994 1.22100 1.01225 0.95864 0.99115 1.22077 1.01712 0.99928 0.94541 1.22747 0.99093 0.82092 0.97873 1.87952 1.70277 1.25422 1.46795 1.22577 0.99307 0.95643 0.82038 1.87998 1.19714 1.76969 1.43219 0.90886 0.90864 0.90260 0.87867 0.89770 0.85937 0.86712 0.89158 0.87854 0.88272 0.89129 0.89524 0.90773 0.93144 0.91764 0.89645 0.87139 0.91870 0.89628 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.57 71.98 0.69 -2.31 16 2 C 0.07 1.98 3.02 30.69 0.09 2.08 16 3 H 0.05 1.54 6.19 -2.39 -0.01 1.53 16 4 C 0.07 2.09 4.17 86.35 0.36 2.45 16 5 N -0.61 -20.62 2.60 -821.09 -2.13 -22.76 16 6 C 0.58 24.36 7.41 86.73 0.64 25.00 16 7 O -0.60 -28.06 16.22 -4.00 -0.06 -28.12 16 8 C -0.29 -13.16 5.39 -19.93 -0.11 -13.27 16 9 C -0.06 -2.58 7.31 22.25 0.16 -2.41 16 10 C -0.19 -9.32 8.63 22.47 0.19 -9.13 16 11 C 0.10 5.21 5.58 -21.28 -0.12 5.09 16 12 C -0.47 -23.50 9.05 23.46 0.21 -23.28 16 13 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 14 C 0.04 1.81 5.15 85.35 0.44 2.25 16 15 N -0.79 -36.62 10.93 21.87 0.24 -36.38 16 16 Si 0.98 34.22 29.60 68.60 2.03 36.25 16 17 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 18 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 19 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 20 C -0.25 -12.24 9.73 22.47 0.22 -12.03 16 21 C -0.03 -1.61 9.53 22.25 0.21 -1.40 16 22 C 0.09 2.47 5.32 86.32 0.46 2.93 16 23 C 0.08 1.91 0.71 -10.70 -0.01 1.90 16 24 C -0.15 -3.64 4.33 30.69 0.13 -3.50 16 25 C -0.14 -2.94 5.99 30.69 0.18 -2.76 16 26 C 0.06 1.02 6.84 72.01 0.49 1.51 16 27 O -0.39 -8.50 10.70 -142.35 -1.52 -10.03 16 28 C 0.08 1.62 5.80 71.98 0.42 2.04 16 29 O -0.36 -9.56 9.32 -142.35 -1.33 -10.88 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 3.57 4.56 -2.38 -0.01 3.56 16 34 H 0.08 2.30 7.93 -2.39 -0.02 2.28 16 35 H 0.12 4.63 5.70 -2.91 -0.02 4.62 16 36 H 0.12 5.63 6.15 -2.91 -0.02 5.61 16 37 H 0.30 12.10 8.29 -92.71 -0.77 11.33 16 38 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.10 4.51 7.95 -2.91 -0.02 4.48 16 40 H 0.09 2.69 7.06 -2.38 -0.02 2.67 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.53 6.03 -2.39 -0.01 1.51 16 44 H 0.06 1.46 7.84 -2.39 -0.02 1.44 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -60.44 379.29 2.86 -57.59 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: 0.96 Total: 39.17 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 4.68 Total: -24.84 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -1.89 Total: -59.13 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -2.91 Total: -49.03 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Total: -60.44 2.86 -57.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366470920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.311 kcal (2) G-P(sol) polarization free energy of solvation -60.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds