Wall clock time and date at job start Wed Apr 1 2020 03:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.56192 * 2 1 4 4 C 1.53295 * 109.50898 * 120.12518 * 2 1 3 5 5 N 1.47157 * 108.41528 * 172.25666 * 4 2 1 6 6 C 1.34774 * 120.98803 * 129.42327 * 5 4 2 7 7 O 1.21545 * 120.00063 * 175.82116 * 6 5 4 8 8 C 1.47886 * 120.00078 * 355.82010 * 6 5 4 9 9 C 1.39919 * 120.02966 * 224.84586 * 8 6 5 10 10 C 1.38328 * 120.36033 * 179.78807 * 9 8 6 11 11 C 1.37747 * 120.41102 * 0.46734 * 10 9 8 12 12 C 1.40747 * 120.04332 * 359.78729 * 11 10 9 13 13 C 1.41434 * 120.18165 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00127 * 330.67493 * 13 12 11 15 15 C 1.39937 * 120.00391 * 150.68106 * 13 12 11 16 16 N 1.30826 * 119.99569 * 348.95837 * 15 13 12 17 17 Si 1.86803 * 120.00198 * 168.96297 * 15 13 12 18 18 H 1.48491 * 109.47052 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46961 * 120.00018 * 17 15 13 20 20 H 1.48501 * 109.46822 * 239.99666 * 17 15 13 21 21 C 1.39005 * 120.02402 * 45.12156 * 8 6 5 22 22 C 1.47173 * 118.02305 * 309.44354 * 5 4 2 23 23 C 1.53189 * 108.40369 * 50.39039 * 22 5 4 24 24 C 1.53081 * 109.47212 * 187.79013 * 23 22 5 25 25 C 1.53204 * 109.02491 * 183.20398 * 24 23 22 26 26 C 1.53088 * 109.15077 * 56.86981 * 25 24 23 27 27 O 1.42901 * 109.46104 * 302.37994 * 26 25 24 28 28 C 1.42922 * 114.08280 * 61.16791 * 27 26 25 29 29 O 1.42873 * 109.40825 * 307.89694 * 23 22 5 30 30 H 1.08996 * 109.47194 * 299.87894 * 1 2 3 31 31 H 1.09004 * 109.46582 * 59.87017 * 1 2 3 32 32 H 1.08998 * 109.47232 * 179.86856 * 1 2 3 33 33 H 1.09002 * 109.67069 * 52.52899 * 4 2 1 34 34 H 1.09000 * 109.67541 * 291.98839 * 4 2 1 35 35 H 1.08004 * 119.81832 * 359.97438 * 9 8 6 36 36 H 1.08005 * 119.79119 * 180.21177 * 10 9 8 37 37 H 1.08001 * 119.97934 * 179.76621 * 11 10 9 38 38 H 0.97002 * 119.99933 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.19894 * 359.95804 * 21 8 6 40 40 H 1.09001 * 109.68461 * 170.13152 * 22 5 4 41 41 H 1.08998 * 109.68192 * 290.65567 * 22 5 4 42 42 H 1.09007 * 109.54285 * 303.06330 * 24 23 22 43 43 H 1.08991 * 109.54424 * 63.33709 * 24 23 22 44 44 H 1.09001 * 109.52308 * 176.77405 * 25 24 23 45 45 H 1.09005 * 109.51829 * 296.90481 * 25 24 23 46 46 H 1.08996 * 109.47822 * 62.37427 * 26 25 24 47 47 H 1.09000 * 109.47332 * 182.38078 * 26 25 24 48 48 H 1.08999 * 109.47823 * 178.98491 * 28 27 26 49 49 H 1.08991 * 109.48268 * 58.94080 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5013 -0.8760 1.1347 6 6 4.3187 -0.5028 2.1392 7 8 5.5144 -0.7049 2.0566 8 6 3.7609 0.1526 3.3418 9 6 4.3891 1.2817 3.8789 10 6 3.8708 1.9027 5.0010 11 6 2.7361 1.4116 5.6083 12 6 2.0934 0.2738 5.0855 13 6 0.9285 -0.2333 5.7070 14 1 0.7826 -0.1027 6.7692 15 6 -0.0352 -0.9042 4.9458 16 7 0.0282 -0.8773 3.6394 17 14 -1.4121 -1.8383 5.7951 18 1 -1.2592 -1.7153 7.2670 19 1 -2.7216 -1.2715 5.3839 20 1 -1.3497 -3.2709 5.4093 21 6 2.6153 -0.3559 3.9429 22 6 4.0415 -1.4459 -0.1099 23 6 3.4306 -0.6892 -1.2935 24 6 3.8222 -1.3838 -2.6002 25 6 3.2738 -0.5745 -3.7798 26 6 3.8077 0.8579 -3.6976 27 8 3.4327 1.4347 -2.4451 28 6 3.9565 0.7477 -1.3065 29 8 2.0077 -0.6766 -1.1655 30 1 -0.3633 0.5119 0.8910 31 1 -0.3632 0.5159 -0.8889 32 1 -0.3633 -1.0276 -0.0024 33 1 1.5759 -1.7080 1.3204 34 1 1.8023 -0.1401 2.1376 35 1 5.2818 1.6721 3.4131 36 1 4.3612 2.7757 5.4059 37 1 2.3395 1.8998 6.4863 38 1 -0.6399 -1.3421 3.1117 39 1 2.1293 -1.2293 3.5340 40 1 5.1259 -1.3356 -0.1239 41 1 3.7790 -2.5018 -0.1744 42 1 4.9085 -1.4414 -2.6712 43 1 3.4004 -2.3885 -2.6197 44 1 3.5965 -1.0305 -4.7158 45 1 2.1847 -0.5614 -3.7374 46 1 4.8944 0.8461 -3.7812 47 1 3.3872 1.4497 -4.5107 48 1 3.6408 1.2585 -0.3969 49 1 5.0451 0.7359 -1.3581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373522384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:00 Heat of formation + Delta-G solvation = -100.476141 kcal Electronic energy + Delta-G solvation = -32601.513016 eV Core-core repulsion = 28493.327991 eV Total energy + Delta-G solvation = -4108.185025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.78820 -39.09879 -37.53860 -37.04272 -34.33128 -34.02000 -33.72765 -32.10740 -30.43564 -29.89543 -29.51588 -26.61100 -25.78559 -25.42149 -25.25682 -22.91326 -21.99665 -21.05506 -20.94948 -19.61468 -18.95257 -17.22042 -16.85817 -16.51189 -16.25441 -15.83394 -15.56340 -15.20831 -15.11465 -14.88046 -14.60840 -14.40785 -13.95859 -13.70989 -13.46029 -13.17502 -12.92683 -12.74536 -12.66031 -12.48833 -12.23316 -12.10330 -11.87492 -11.77180 -11.54938 -11.43634 -11.23874 -11.16801 -11.08554 -10.96194 -10.76410 -10.57161 -10.55794 -10.24674 -10.17505 -10.00406 -9.70235 -9.36780 -9.26962 -9.01728 -8.10551 -7.64751 -7.54222 -6.89676 -4.54045 2.23141 2.69134 3.02192 3.05314 3.06392 3.30922 3.56357 3.68480 3.84806 3.90693 4.51369 4.60733 4.66349 4.69455 4.83594 5.03078 5.19671 5.22964 5.29866 5.40404 5.40756 5.43214 5.48481 5.57324 5.67341 5.67633 5.74870 5.83374 5.87087 5.98481 6.06665 6.08882 6.13497 6.19251 6.31228 6.33753 6.49028 6.59661 6.63936 6.83834 6.84652 6.98230 7.09889 7.13646 7.28063 7.47182 7.58628 7.67063 7.81017 7.92276 8.02203 8.39133 8.68316 8.72486 8.76500 10.06921 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.004122 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.373301 B = 6790.552323 C = 8019.880166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.062 0.938 4 C 0.066 3.934 5 N -0.614 5.614 6 C 0.571 3.429 7 O -0.557 6.557 8 C -0.122 4.122 9 C -0.184 4.184 10 C -0.102 4.102 11 C -0.199 4.199 12 C 0.102 3.898 13 C -0.460 4.460 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.808 5.808 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.273 1.273 21 C -0.131 4.131 22 C 0.091 3.909 23 C 0.078 3.922 24 C -0.105 4.105 25 C -0.150 4.150 26 C 0.058 3.942 27 O -0.371 6.371 28 C 0.040 3.960 29 O -0.362 6.362 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.281 0.719 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -0.442 -12.368 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.016 3.984 3 H 0.080 0.920 4 C -0.056 4.056 5 N -0.347 5.347 6 C 0.363 3.637 7 O -0.436 6.436 8 C -0.125 4.125 9 C -0.204 4.204 10 C -0.120 4.120 11 C -0.218 4.218 12 C 0.100 3.900 13 C -0.490 4.490 14 H 0.097 0.903 15 C -0.138 4.138 16 N -0.434 5.434 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.198 1.198 21 C -0.151 4.151 22 C -0.033 4.033 23 C 0.037 3.963 24 C -0.143 4.143 25 C -0.188 4.188 26 C -0.019 4.019 27 O -0.289 6.289 28 C -0.037 4.037 29 O -0.281 6.281 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.119 0.881 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.320 -0.563 -12.719 12.799 hybrid contribution -0.374 -0.675 0.458 0.897 sum 0.945 -1.237 -12.261 12.359 Atomic orbital electron populations 1.21631 0.92066 1.02854 1.02584 1.22569 0.95661 0.95585 0.84598 0.92045 1.23214 0.77956 1.03037 1.01359 1.48147 1.07950 1.63127 1.15505 1.18959 0.85406 0.76536 0.82822 1.90658 1.15644 1.56630 1.80704 1.19459 0.98153 0.98862 0.96040 1.20327 1.01269 0.99033 0.99751 1.20510 0.96647 0.98873 0.95961 1.21245 0.99171 0.98511 1.02909 1.17541 0.91885 0.89542 0.91017 1.19581 1.02139 1.31087 0.96187 0.90262 1.25803 0.98952 0.94334 0.94745 1.69645 1.33534 1.34585 1.05681 0.86204 0.80052 0.79496 0.80671 1.18607 1.19925 1.19819 1.21673 0.93257 1.01137 0.99018 1.22090 1.00285 0.97401 0.83490 1.22289 0.83350 0.95463 0.95161 1.21528 1.00807 0.99740 0.92255 1.22110 1.02814 0.95904 0.97932 1.22587 0.98545 0.94035 0.86708 1.87976 1.74818 1.52674 1.13477 1.23125 0.97862 0.92831 0.89868 1.87925 1.18640 1.77223 1.44327 0.89841 0.92447 0.92032 0.91051 0.83293 0.88583 0.88546 0.88396 0.90780 0.84924 0.88637 0.90958 0.90419 0.90360 0.91016 0.90080 0.93508 0.89021 0.88130 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.57 37.16 0.36 -1.62 16 2 C 0.07 1.21 3.02 -26.58 -0.08 1.13 16 3 H 0.06 1.07 6.21 -51.93 -0.32 0.75 16 4 C 0.07 1.21 4.31 -3.53 -0.02 1.19 16 5 N -0.61 -11.49 2.60 -173.42 -0.45 -11.94 16 6 C 0.57 12.45 7.31 -12.31 -0.09 12.36 16 7 O -0.56 -13.15 16.47 5.33 0.09 -13.06 16 8 C -0.12 -2.80 5.20 -105.03 -0.55 -3.34 16 9 C -0.18 -4.09 9.69 -38.92 -0.38 -4.46 16 10 C -0.10 -2.16 10.01 -39.73 -0.40 -2.56 16 11 C -0.20 -4.50 9.78 -38.81 -0.38 -4.88 16 12 C 0.10 2.49 5.54 -106.87 -0.59 1.90 16 13 C -0.46 -11.06 9.06 -37.73 -0.34 -11.40 16 14 H 0.08 1.87 7.87 -52.49 -0.41 1.45 16 15 C 0.08 1.73 5.24 -17.34 -0.09 1.64 16 16 N -0.81 -17.63 9.74 55.55 0.54 -17.09 16 17 Si 0.91 17.28 29.57 -169.99 -5.03 12.25 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.13 -3.09 6.08 -38.44 -0.23 -3.33 16 22 C 0.09 1.43 5.29 -3.58 -0.02 1.41 16 23 C 0.08 1.11 0.71 -90.48 -0.06 1.05 16 24 C -0.11 -1.17 5.04 -26.58 -0.13 -1.30 16 25 C -0.15 -1.52 5.98 -26.58 -0.16 -1.68 16 26 C 0.06 0.63 6.84 37.20 0.25 0.88 16 27 O -0.37 -5.40 10.70 -42.46 -0.45 -5.86 16 28 C 0.04 0.60 5.10 37.16 0.19 0.78 16 29 O -0.36 -5.69 9.30 -42.46 -0.39 -6.09 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.15 3.09 3.51 -51.93 -0.18 2.91 16 35 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.28 5.61 8.30 -40.82 -0.34 5.28 16 39 H 0.13 3.17 4.81 -52.49 -0.25 2.92 16 40 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.10 1.69 6.06 -51.93 -0.31 1.38 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -26.55 378.90 -10.02 -36.58 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.31 Total: 11.73 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.72 Total: -12.23 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: 0.09 Total: -29.02 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.76 Total: -25.01 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.55 -10.02 -36.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373522384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.901 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds