Wall clock time and date at job start Wed Apr 1 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.56192 * 2 1 4 4 C 1.53295 * 109.50898 * 120.12518 * 2 1 3 5 5 N 1.47157 * 108.41528 * 172.25666 * 4 2 1 6 6 C 1.34774 * 120.98803 * 129.42327 * 5 4 2 7 7 O 1.21545 * 120.00063 * 175.82116 * 6 5 4 8 8 C 1.47886 * 120.00078 * 355.82010 * 6 5 4 9 9 C 1.39919 * 120.02966 * 224.84586 * 8 6 5 10 10 C 1.38328 * 120.36033 * 179.78807 * 9 8 6 11 11 C 1.37747 * 120.41102 * 0.46734 * 10 9 8 12 12 C 1.40747 * 120.04332 * 359.78729 * 11 10 9 13 13 C 1.41434 * 120.18165 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00127 * 330.67493 * 13 12 11 15 15 C 1.39937 * 120.00391 * 150.68106 * 13 12 11 16 16 N 1.30826 * 119.99569 * 348.95837 * 15 13 12 17 17 Si 1.86803 * 120.00198 * 168.96297 * 15 13 12 18 18 H 1.48491 * 109.47052 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46961 * 120.00018 * 17 15 13 20 20 H 1.48501 * 109.46822 * 239.99666 * 17 15 13 21 21 C 1.39005 * 120.02402 * 45.12156 * 8 6 5 22 22 C 1.47173 * 118.02305 * 309.44354 * 5 4 2 23 23 C 1.53189 * 108.40369 * 50.39039 * 22 5 4 24 24 C 1.53081 * 109.47212 * 187.79013 * 23 22 5 25 25 C 1.53204 * 109.02491 * 183.20398 * 24 23 22 26 26 C 1.53088 * 109.15077 * 56.86981 * 25 24 23 27 27 O 1.42901 * 109.46104 * 302.37994 * 26 25 24 28 28 C 1.42922 * 114.08280 * 61.16791 * 27 26 25 29 29 O 1.42873 * 109.40825 * 307.89694 * 23 22 5 30 30 H 1.08996 * 109.47194 * 299.87894 * 1 2 3 31 31 H 1.09004 * 109.46582 * 59.87017 * 1 2 3 32 32 H 1.08998 * 109.47232 * 179.86856 * 1 2 3 33 33 H 1.09002 * 109.67069 * 52.52899 * 4 2 1 34 34 H 1.09000 * 109.67541 * 291.98839 * 4 2 1 35 35 H 1.08004 * 119.81832 * 359.97438 * 9 8 6 36 36 H 1.08005 * 119.79119 * 180.21177 * 10 9 8 37 37 H 1.08001 * 119.97934 * 179.76621 * 11 10 9 38 38 H 0.97002 * 119.99933 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.19894 * 359.95804 * 21 8 6 40 40 H 1.09001 * 109.68461 * 170.13152 * 22 5 4 41 41 H 1.08998 * 109.68192 * 290.65567 * 22 5 4 42 42 H 1.09007 * 109.54285 * 303.06330 * 24 23 22 43 43 H 1.08991 * 109.54424 * 63.33709 * 24 23 22 44 44 H 1.09001 * 109.52308 * 176.77405 * 25 24 23 45 45 H 1.09005 * 109.51829 * 296.90481 * 25 24 23 46 46 H 1.08996 * 109.47822 * 62.37427 * 26 25 24 47 47 H 1.09000 * 109.47332 * 182.38078 * 26 25 24 48 48 H 1.08999 * 109.47823 * 178.98491 * 28 27 26 49 49 H 1.08991 * 109.48268 * 58.94080 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5013 -0.8760 1.1347 6 6 4.3187 -0.5028 2.1392 7 8 5.5144 -0.7049 2.0566 8 6 3.7609 0.1526 3.3418 9 6 4.3891 1.2817 3.8789 10 6 3.8708 1.9027 5.0010 11 6 2.7361 1.4116 5.6083 12 6 2.0934 0.2738 5.0855 13 6 0.9285 -0.2333 5.7070 14 1 0.7826 -0.1027 6.7692 15 6 -0.0352 -0.9042 4.9458 16 7 0.0282 -0.8773 3.6394 17 14 -1.4121 -1.8383 5.7951 18 1 -1.2592 -1.7153 7.2670 19 1 -2.7216 -1.2715 5.3839 20 1 -1.3497 -3.2709 5.4093 21 6 2.6153 -0.3559 3.9429 22 6 4.0415 -1.4459 -0.1099 23 6 3.4306 -0.6892 -1.2935 24 6 3.8222 -1.3838 -2.6002 25 6 3.2738 -0.5745 -3.7798 26 6 3.8077 0.8579 -3.6976 27 8 3.4327 1.4347 -2.4451 28 6 3.9565 0.7477 -1.3065 29 8 2.0077 -0.6766 -1.1655 30 1 -0.3633 0.5119 0.8910 31 1 -0.3632 0.5159 -0.8889 32 1 -0.3633 -1.0276 -0.0024 33 1 1.5759 -1.7080 1.3204 34 1 1.8023 -0.1401 2.1376 35 1 5.2818 1.6721 3.4131 36 1 4.3612 2.7757 5.4059 37 1 2.3395 1.8998 6.4863 38 1 -0.6399 -1.3421 3.1117 39 1 2.1293 -1.2293 3.5340 40 1 5.1259 -1.3356 -0.1239 41 1 3.7790 -2.5018 -0.1744 42 1 4.9085 -1.4414 -2.6712 43 1 3.4004 -2.3885 -2.6197 44 1 3.5965 -1.0305 -4.7158 45 1 2.1847 -0.5614 -3.7374 46 1 4.8944 0.8461 -3.7812 47 1 3.3872 1.4497 -4.5107 48 1 3.6408 1.2585 -0.3969 49 1 5.0451 0.7359 -1.3581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373522384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:58 Heat of formation + Delta-G solvation = -113.487352 kcal Electronic energy + Delta-G solvation = -32602.077224 eV Core-core repulsion = 28493.327991 eV Total energy + Delta-G solvation = -4108.749233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.11023 -40.57199 -38.93675 -38.62580 -35.82687 -35.46444 -35.15598 -33.16348 -32.06352 -31.51604 -30.93119 -27.92254 -27.32786 -27.02958 -26.31810 -24.20654 -23.47563 -22.73631 -22.17043 -20.85036 -20.53398 -18.90126 -18.15388 -17.95396 -17.54360 -17.26075 -16.94131 -16.62804 -16.48296 -16.34222 -16.03170 -15.62662 -15.44274 -15.02773 -14.84707 -14.58305 -14.46258 -14.27155 -13.91047 -13.69980 -13.55540 -13.47145 -13.27198 -13.04628 -12.99035 -12.80750 -12.72040 -12.62619 -12.44877 -12.22036 -12.12088 -12.03569 -11.95960 -11.59958 -11.52791 -11.39619 -11.21689 -11.05277 -10.69662 -10.38800 -9.62246 -9.37879 -9.31292 -8.58849 -6.34193 0.46472 0.98215 1.46129 1.48654 1.56876 1.73517 1.92810 2.25754 2.51763 2.77562 2.86751 3.45879 3.52606 3.59035 3.61805 3.74017 3.90436 4.00438 4.05683 4.14459 4.21601 4.32815 4.36315 4.41869 4.46801 4.54983 4.56548 4.58722 4.68782 4.71579 4.84754 4.85099 4.92343 4.94505 4.98942 5.06594 5.10029 5.11413 5.16779 5.28841 5.34976 5.36431 5.44055 5.55070 5.81002 5.92861 6.03323 6.06049 6.23885 6.25789 6.28650 6.59385 6.90612 6.95437 7.05842 8.38615 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.004122 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.373301 B = 6790.552323 C = 8019.880166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.082 3.918 3 H 0.048 0.952 4 C 0.073 3.927 5 N -0.608 5.608 6 C 0.567 3.433 7 O -0.582 6.582 8 C -0.133 4.133 9 C -0.198 4.198 10 C -0.096 4.096 11 C -0.214 4.214 12 C 0.078 3.922 13 C -0.491 4.491 14 H 0.075 0.925 15 C 0.046 3.954 16 N -0.812 5.812 17 Si 0.975 3.025 18 H -0.267 1.267 19 H -0.266 1.266 20 H -0.270 1.270 21 C -0.138 4.138 22 C 0.087 3.913 23 C 0.079 3.921 24 C -0.104 4.104 25 C -0.144 4.144 26 C 0.048 3.952 27 O -0.393 6.393 28 C 0.045 3.955 29 O -0.362 6.362 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.291 0.709 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -1.091 -14.172 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.023 3.977 3 H 0.066 0.934 4 C -0.048 4.048 5 N -0.339 5.339 6 C 0.359 3.641 7 O -0.464 6.464 8 C -0.136 4.136 9 C -0.218 4.218 10 C -0.114 4.114 11 C -0.234 4.234 12 C 0.076 3.924 13 C -0.521 4.521 14 H 0.093 0.907 15 C -0.170 4.170 16 N -0.438 5.438 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.195 1.195 21 C -0.158 4.158 22 C -0.035 4.035 23 C 0.038 3.962 24 C -0.142 4.142 25 C -0.181 4.181 26 C -0.027 4.027 27 O -0.312 6.312 28 C -0.032 4.032 29 O -0.282 6.282 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.127 0.873 48 H 0.089 0.911 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.850 -1.208 -14.564 14.639 hybrid contribution -0.217 -0.446 0.942 1.064 sum 0.633 -1.654 -13.622 13.737 Atomic orbital electron populations 1.21566 0.90746 1.03283 1.02785 1.22426 0.96611 0.94571 0.84055 0.93388 1.23075 0.77646 1.02531 1.01596 1.48157 1.07945 1.62017 1.15794 1.18863 0.85314 0.76732 0.83237 1.90627 1.16426 1.57993 1.81312 1.19695 0.98067 0.99217 0.96608 1.20559 1.01688 0.99196 1.00325 1.20810 0.95988 0.99386 0.95171 1.21460 0.99847 0.98478 1.03591 1.17868 0.92540 0.90365 0.91627 1.19760 1.03039 1.32982 0.96304 0.90671 1.26452 1.00593 0.94588 0.95371 1.69679 1.33990 1.33857 1.06305 0.85245 0.77545 0.78197 0.79299 1.19054 1.19093 1.19452 1.21548 0.93730 1.01181 0.99364 1.22352 1.00377 0.98179 0.82635 1.22450 0.82297 0.95310 0.96106 1.21624 1.02191 0.99833 0.90522 1.22082 1.01714 0.95454 0.98856 1.22894 0.99807 0.94686 0.85358 1.87946 1.75238 1.53420 1.14578 1.22959 0.98159 0.92787 0.89343 1.87928 1.19738 1.76927 1.43580 0.90788 0.91040 0.91440 0.91413 0.85545 0.87872 0.85322 0.87292 0.89824 0.85783 0.88690 0.89741 0.88428 0.89507 0.87863 0.91687 0.91931 0.87310 0.91055 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.57 71.98 0.69 -2.97 16 2 C 0.08 2.68 3.02 30.69 0.09 2.77 16 3 H 0.05 1.72 6.21 -2.39 -0.01 1.70 16 4 C 0.07 2.73 4.31 86.35 0.37 3.10 16 5 N -0.61 -23.07 2.60 -820.85 -2.13 -25.20 16 6 C 0.57 25.34 7.31 86.80 0.63 25.97 16 7 O -0.58 -27.95 16.47 -3.86 -0.06 -28.01 16 8 C -0.13 -6.27 5.20 -20.13 -0.10 -6.37 16 9 C -0.20 -8.92 9.69 22.70 0.22 -8.70 16 10 C -0.10 -4.06 10.01 22.17 0.22 -3.84 16 11 C -0.21 -9.84 9.78 22.77 0.22 -9.61 16 12 C 0.08 3.90 5.54 -21.32 -0.12 3.79 16 13 C -0.49 -24.13 9.06 23.47 0.21 -23.92 16 14 H 0.08 3.62 7.87 -2.91 -0.02 3.60 16 15 C 0.05 2.05 5.24 85.25 0.45 2.49 16 16 N -0.81 -35.71 9.74 21.82 0.21 -35.50 16 17 Si 0.97 35.14 29.57 68.60 2.03 37.17 16 18 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 20 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 21 C -0.14 -6.75 6.08 23.01 0.14 -6.61 16 22 C 0.09 2.68 5.29 86.31 0.46 3.14 16 23 C 0.08 2.15 0.71 -10.70 -0.01 2.14 16 24 C -0.10 -2.01 5.04 30.69 0.15 -1.86 16 25 C -0.14 -2.46 5.98 30.69 0.18 -2.28 16 26 C 0.05 0.92 6.84 72.01 0.49 1.41 16 27 O -0.39 -11.01 10.70 -142.07 -1.52 -12.53 16 28 C 0.04 1.31 5.10 71.99 0.37 1.67 16 29 O -0.36 -11.05 9.30 -142.07 -1.32 -12.37 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.13 5.43 3.51 -2.39 -0.01 5.42 16 35 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 36 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.29 11.50 8.30 -92.71 -0.77 10.73 16 39 H 0.12 6.14 4.81 -2.91 -0.01 6.13 16 40 H 0.09 2.97 7.11 -2.39 -0.02 2.95 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.35 7.84 -2.38 -0.02 1.33 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.07 2.48 6.06 -2.39 -0.01 2.46 16 49 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -58.00 378.90 2.84 -55.16 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: 0.96 Total: 40.94 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 4.68 Total: -19.66 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -1.92 Total: -60.70 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -2.91 Total: -52.90 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -58.00 2.84 -55.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373522384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.328 kcal (2) G-P(sol) polarization free energy of solvation -57.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds