Wall clock time and date at job start Wed Apr 1 2020 03:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.51414 * 2 1 4 4 C 1.52846 * 109.63186 * 240.01812 * 2 1 3 5 5 N 1.47149 * 108.62619 * 187.83205 * 4 2 1 6 6 C 1.34784 * 120.98285 * 230.54880 * 5 4 2 7 7 O 1.21546 * 119.99426 * 183.63751 * 6 5 4 8 8 C 1.47881 * 120.00179 * 3.63308 * 6 5 4 9 9 C 1.39917 * 120.02675 * 140.36774 * 8 6 5 10 10 C 1.38329 * 120.35988 * 179.97438 * 9 8 6 11 11 C 1.37750 * 120.41208 * 359.97438 * 10 9 8 12 12 C 1.40756 * 120.03916 * 359.97438 * 11 10 9 13 13 C 1.41438 * 120.17504 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99727 * 152.51998 * 13 12 11 15 15 C 1.39932 * 120.00520 * 332.52283 * 13 12 11 16 16 N 1.30820 * 120.00383 * 162.45468 * 15 13 12 17 17 Si 1.86809 * 119.99895 * 342.45968 * 15 13 12 18 18 H 1.48494 * 109.46997 * 92.37841 * 17 15 13 19 19 H 1.48496 * 109.47018 * 212.38048 * 17 15 13 20 20 H 1.48499 * 109.46607 * 332.38049 * 17 15 13 21 21 C 1.39004 * 120.02249 * 320.32587 * 8 6 5 22 22 C 1.47157 * 118.03014 * 50.27038 * 5 4 2 23 23 C 1.53200 * 108.41730 * 309.88814 * 22 5 4 24 24 C 1.53103 * 109.41265 * 172.05270 * 23 22 5 25 25 C 1.53192 * 109.03777 * 176.74514 * 24 23 22 26 26 C 1.53102 * 109.14490 * 303.10906 * 25 24 23 27 27 O 1.42902 * 109.43240 * 57.65251 * 26 25 24 28 28 C 1.42918 * 114.10394 * 298.82249 * 27 26 25 29 29 O 1.42848 * 109.42265 * 52.03099 * 23 22 5 30 30 H 1.09000 * 109.47285 * 299.89276 * 1 2 3 31 31 H 1.08997 * 109.47163 * 59.90045 * 1 2 3 32 32 H 1.09007 * 109.47288 * 179.89604 * 1 2 3 33 33 H 1.09003 * 109.61154 * 68.00155 * 4 2 1 34 34 H 1.08999 * 109.51212 * 307.60018 * 4 2 1 35 35 H 1.07999 * 119.81873 * 0.26069 * 9 8 6 36 36 H 1.07998 * 119.79515 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.98342 * 180.02562 * 11 10 9 38 38 H 0.97001 * 120.00574 * 180.02562 * 16 15 13 39 39 H 1.07993 * 120.20324 * 0.04380 * 21 8 6 40 40 H 1.08997 * 109.67352 * 69.61745 * 22 5 4 41 41 H 1.08999 * 109.67992 * 190.11848 * 22 5 4 42 42 H 1.08993 * 109.54605 * 296.61101 * 24 23 22 43 43 H 1.08999 * 109.54404 * 56.79646 * 24 23 22 44 44 H 1.09001 * 109.52576 * 63.00539 * 25 24 23 45 45 H 1.08995 * 109.52603 * 183.13921 * 25 24 23 46 46 H 1.08996 * 109.47749 * 177.64252 * 26 25 24 47 47 H 1.08999 * 109.47449 * 297.66784 * 26 25 24 48 48 H 1.09001 * 109.46959 * 301.03437 * 28 27 26 49 49 H 1.08993 * 109.47990 * 181.00932 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0435 -0.7194 -1.2470 5 7 3.5025 -0.8733 -1.1334 6 6 4.3199 -0.4986 -2.1375 7 8 5.5165 -0.6943 -2.0520 8 6 3.7610 0.1506 -3.3429 9 6 4.4429 1.2132 -3.9458 10 6 3.9266 1.8251 -5.0738 11 6 2.7360 1.3953 -5.6171 12 6 2.0363 0.3270 -5.0251 13 6 0.8132 -0.1162 -5.5802 14 1 0.5009 -1.1416 -5.4490 15 6 0.0079 0.7738 -6.2995 16 7 -0.9263 0.3161 -7.0927 17 14 0.2667 2.6159 -6.1271 18 1 1.2055 3.0842 -7.1780 19 1 -1.0346 3.3149 -6.2785 20 1 0.8352 2.9125 -4.7877 21 6 2.5582 -0.2952 -3.8784 22 6 4.0431 -1.4426 0.1113 23 6 3.4301 -0.6875 1.2950 24 6 3.8201 -1.3855 2.6007 25 6 3.2717 -0.5787 3.7818 26 6 3.8075 0.8534 3.7036 27 8 3.4333 1.4334 2.4523 28 6 3.9564 0.7489 1.3120 29 8 2.0075 -0.6760 1.1658 30 1 -0.3634 0.5122 0.8909 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3634 -1.0277 -0.0019 33 1 1.8041 -0.1315 -2.1331 34 1 1.5754 -1.7011 -1.3196 35 1 5.3797 1.5546 -3.5308 36 1 4.4608 2.6443 -5.5320 37 1 2.3394 1.8778 -6.4982 38 1 -1.4844 0.9330 -7.5916 39 1 2.0284 -1.1150 -3.4164 40 1 3.7824 -2.4990 0.1751 41 1 5.1272 -1.3306 0.1256 42 1 3.3973 -2.3899 2.6177 43 1 4.9062 -1.4457 2.6717 44 1 2.1827 -0.5630 3.7379 45 1 3.5920 -1.0380 4.7169 46 1 3.3874 1.4436 4.5179 47 1 4.8942 0.8399 3.7873 48 1 5.0451 0.7365 1.3635 49 1 3.6412 1.2622 0.4037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373522385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:03 Heat of formation + Delta-G solvation = -108.959478 kcal Electronic energy + Delta-G solvation = -32115.144950 eV Core-core repulsion = 28006.592060 eV Total energy + Delta-G solvation = -4108.552890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.18948 -40.67027 -39.13290 -38.69387 -35.93154 -35.56806 -35.17306 -33.21256 -32.49247 -32.04436 -31.03909 -27.98958 -27.42228 -27.02861 -26.32477 -24.49989 -23.61808 -22.51477 -22.32753 -21.04007 -20.61468 -19.25524 -18.02937 -17.90915 -17.88723 -17.46184 -17.13472 -16.67289 -16.56331 -16.46422 -16.05762 -15.76223 -15.51745 -15.23846 -14.89438 -14.74017 -14.48276 -14.41615 -13.98481 -13.83906 -13.73507 -13.55954 -13.43649 -13.31971 -13.06965 -12.98123 -12.76691 -12.73179 -12.61706 -12.29479 -12.17160 -12.04269 -11.74453 -11.58832 -11.54640 -11.49274 -11.24573 -11.15911 -10.74225 -10.39899 -9.72072 -9.61458 -9.47934 -8.92183 -6.54128 0.23557 0.70538 1.28224 1.42045 1.48518 1.65636 1.81756 2.10869 2.48705 2.57306 2.86387 3.39641 3.40252 3.50252 3.54056 3.68356 3.81697 3.96518 4.03956 4.11504 4.21160 4.21651 4.28193 4.33561 4.38958 4.42798 4.51481 4.53588 4.56839 4.63599 4.68334 4.73117 4.82545 4.84644 4.89561 4.91772 4.99475 4.99646 5.10232 5.12483 5.25392 5.28390 5.35141 5.43751 5.60435 5.70735 5.83314 6.04334 6.05531 6.16522 6.25819 6.29710 6.61654 6.76319 6.98040 8.14985 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.003516 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.211814 B = 7961.493670 C = 8598.088070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.055 0.945 4 C 0.055 3.945 5 N -0.605 5.605 6 C 0.568 3.432 7 O -0.573 6.573 8 C -0.105 4.105 9 C -0.188 4.188 10 C -0.079 4.079 11 C -0.236 4.236 12 C 0.073 3.927 13 C -0.472 4.472 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.840 5.840 17 Si 0.960 3.040 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.249 1.249 21 C -0.182 4.182 22 C 0.089 3.911 23 C 0.079 3.921 24 C -0.105 4.105 25 C -0.144 4.144 26 C 0.049 3.951 27 O -0.393 6.393 28 C 0.043 3.957 29 O -0.360 6.360 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.295 0.705 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 0.666 19.426 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.018 3.982 3 H 0.072 0.928 4 C -0.067 4.067 5 N -0.337 5.337 6 C 0.359 3.641 7 O -0.454 6.454 8 C -0.108 4.108 9 C -0.208 4.208 10 C -0.097 4.097 11 C -0.255 4.255 12 C 0.070 3.930 13 C -0.501 4.501 14 H 0.083 0.917 15 C -0.163 4.163 16 N -0.465 5.465 17 Si 0.784 3.216 18 H -0.185 1.185 19 H -0.206 1.206 20 H -0.172 1.172 21 C -0.202 4.202 22 C -0.033 4.033 23 C 0.038 3.962 24 C -0.142 4.142 25 C -0.182 4.182 26 C -0.027 4.027 27 O -0.312 6.312 28 C -0.034 4.034 29 O -0.279 6.279 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.804 0.592 19.424 20.018 hybrid contribution 0.073 0.267 -0.892 0.934 sum 4.877 0.859 18.532 19.182 Atomic orbital electron populations 1.21686 0.90611 1.03732 1.03418 1.22396 0.96687 0.95034 0.84037 0.92753 1.23202 0.78893 1.03143 1.01455 1.48036 1.07479 1.62193 1.16009 1.18704 0.85407 0.76876 0.83064 1.90668 1.16181 1.57518 1.81048 1.19609 0.96255 0.98907 0.96071 1.20653 1.01033 0.99729 0.99399 1.20887 0.94999 0.98851 0.94956 1.21400 0.98134 1.03331 1.02641 1.17756 0.92955 0.91752 0.90491 1.19446 1.03337 0.98534 1.28733 0.91742 1.26766 0.93292 1.05467 0.90820 1.69697 1.17478 1.40216 1.19138 0.85595 0.77413 0.77207 0.81357 1.18462 1.20579 1.17228 1.21443 0.96487 1.04496 0.97768 1.22366 1.00475 0.98335 0.82155 1.22453 0.82262 0.95336 0.96151 1.21623 1.02206 0.99843 0.90565 1.22080 1.01728 0.95445 0.98916 1.22881 0.99760 0.94654 0.85423 1.87946 1.75271 1.53427 1.14575 1.22993 0.98253 0.92817 0.89378 1.87951 1.19747 1.76851 1.43397 0.90792 0.90300 0.90984 0.86746 0.89679 0.86647 0.84720 0.87615 0.89387 0.85920 0.89253 0.88532 0.89414 0.88478 0.91639 0.88061 0.87487 0.92006 0.91664 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.57 71.98 0.69 -2.45 16 2 C 0.08 2.05 3.01 30.54 0.09 2.14 16 3 H 0.05 1.60 6.22 -2.39 -0.01 1.58 16 4 C 0.06 1.64 4.41 86.20 0.38 2.02 16 5 N -0.61 -19.14 2.61 -821.75 -2.15 -21.29 16 6 C 0.57 21.89 7.37 86.80 0.64 22.53 16 7 O -0.57 -24.39 16.40 -3.86 -0.06 -24.46 16 8 C -0.11 -4.35 5.36 -20.13 -0.11 -4.46 16 9 C -0.19 -7.59 9.64 22.70 0.22 -7.37 16 10 C -0.08 -3.13 10.01 22.18 0.22 -2.91 16 11 C -0.24 -10.51 7.18 22.77 0.16 -10.34 16 12 C 0.07 3.46 5.17 -21.32 -0.11 3.35 16 13 C -0.47 -24.36 9.58 23.47 0.22 -24.14 16 14 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 15 C 0.05 2.63 5.42 85.25 0.46 3.09 16 16 N -0.84 -43.24 13.93 21.82 0.30 -42.93 16 17 Si 0.96 39.72 24.45 68.60 1.68 41.39 16 18 H -0.26 -10.21 6.55 99.48 0.65 -9.56 16 19 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.25 -10.36 6.89 99.48 0.69 -9.68 16 21 C -0.18 -7.84 7.09 23.01 0.16 -7.68 16 22 C 0.09 2.28 5.29 86.32 0.46 2.74 16 23 C 0.08 1.79 0.70 -10.70 -0.01 1.79 16 24 C -0.10 -1.69 5.03 30.69 0.15 -1.53 16 25 C -0.14 -2.11 5.99 30.69 0.18 -1.92 16 26 C 0.05 0.81 6.84 72.02 0.49 1.30 16 27 O -0.39 -9.79 10.70 -142.26 -1.52 -11.32 16 28 C 0.04 1.08 5.11 71.98 0.37 1.45 16 29 O -0.36 -9.21 9.30 -142.26 -1.32 -10.53 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.11 3.89 4.14 -2.39 -0.01 3.88 16 34 H 0.09 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.12 4.35 8.05 -2.91 -0.02 4.33 16 36 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.11 4.66 4.27 -2.91 -0.01 4.65 16 38 H 0.30 13.68 8.30 -92.71 -0.77 12.91 16 39 H 0.12 4.95 5.98 -2.91 -0.02 4.93 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.55 7.10 -2.39 -0.02 2.54 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.08 2.24 6.08 -2.39 -0.01 2.22 16 Total: -1.00 -60.90 374.34 2.49 -58.41 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.89 Total: 33.13 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.68 Total: -22.40 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -1.84 Total: -64.22 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.91 Total: -46.31 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.68 Total: 41.39 kcal Total: -60.90 2.49 -58.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373522385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.554 kcal (2) G-P(sol) polarization free energy of solvation -60.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds