Wall clock time and date at job start Wed Apr 1 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.50847 * 2 1 4 4 C 1.53298 * 109.55484 * 239.87325 * 2 1 3 5 5 N 1.47156 * 108.41588 * 187.71816 * 4 2 1 6 6 C 1.34769 * 120.98717 * 230.53590 * 5 4 2 7 7 O 1.21545 * 119.99896 * 174.63044 * 6 5 4 8 8 C 1.47891 * 120.00326 * 354.62152 * 6 5 4 9 9 C 1.39917 * 120.02707 * 147.27403 * 8 6 5 10 10 C 1.38325 * 120.36220 * 179.97438 * 9 8 6 11 11 C 1.37759 * 120.40669 * 0.02562 * 10 9 8 12 12 C 1.40747 * 120.04225 * 359.97438 * 11 10 9 13 13 C 1.41440 * 120.17536 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99863 * 156.50930 * 13 12 11 15 15 C 1.39935 * 120.00350 * 336.50549 * 13 12 11 16 16 N 1.30830 * 119.99710 * 343.51345 * 15 13 12 17 17 Si 1.86799 * 120.00261 * 163.50853 * 15 13 12 18 18 H 1.48497 * 109.46987 * 0.02562 * 17 15 13 19 19 H 1.48490 * 109.47174 * 120.00188 * 17 15 13 20 20 H 1.48497 * 109.47132 * 240.00248 * 17 15 13 21 21 C 1.39000 * 120.02167 * 327.00806 * 8 6 5 22 22 C 1.47175 * 118.02085 * 50.55275 * 5 4 2 23 23 C 1.53193 * 108.37532 * 309.58751 * 22 5 4 24 24 C 1.53243 * 109.40769 * 292.18469 * 23 22 5 25 25 C 1.53194 * 108.95160 * 183.22865 * 24 23 22 26 26 C 1.53094 * 109.19787 * 56.85438 * 25 24 23 27 27 O 1.42893 * 109.45116 * 302.32357 * 26 25 24 28 28 C 1.42925 * 114.09494 * 61.17395 * 27 26 25 29 29 O 1.42865 * 109.40785 * 52.16847 * 23 22 5 30 30 H 1.08997 * 109.46807 * 299.89057 * 1 2 3 31 31 H 1.08996 * 109.46843 * 59.89132 * 1 2 3 32 32 H 1.09003 * 109.46604 * 179.89020 * 1 2 3 33 33 H 1.08999 * 109.67307 * 307.44487 * 4 2 1 34 34 H 1.08997 * 109.67885 * 67.98724 * 4 2 1 35 35 H 1.08002 * 119.81769 * 0.02562 * 9 8 6 36 36 H 1.07993 * 119.79558 * 180.02562 * 10 9 8 37 37 H 1.07999 * 119.97495 * 179.97438 * 11 10 9 38 38 H 0.97004 * 120.00102 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.20427 * 359.97438 * 21 8 6 40 40 H 1.09000 * 109.68204 * 189.86885 * 22 5 4 41 41 H 1.08993 * 109.68640 * 69.30685 * 22 5 4 42 42 H 1.08999 * 109.63267 * 63.35842 * 24 23 22 43 43 H 1.09001 * 109.52548 * 303.03698 * 24 23 22 44 44 H 1.09004 * 109.52923 * 296.92544 * 25 24 23 45 45 H 1.09004 * 109.52505 * 176.79048 * 25 24 23 46 46 H 1.09004 * 109.47131 * 62.32077 * 26 25 24 47 47 H 1.09008 * 109.47490 * 182.32087 * 26 25 24 48 48 H 1.08995 * 109.48234 * 58.95610 * 28 27 26 49 49 H 1.08995 * 109.47910 * 178.99566 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0432 -0.7250 -1.2494 5 7 3.5025 -0.8747 -1.1337 6 6 4.3201 -0.5018 -2.1381 7 8 5.5255 -0.5417 -1.9872 8 6 3.7507 -0.0443 -3.4240 9 6 4.4140 0.9317 -4.1757 10 6 3.8879 1.3643 -5.3797 11 6 2.7050 0.8399 -5.8523 12 6 2.0235 -0.1428 -5.1100 13 6 0.8090 -0.6835 -5.5929 14 1 0.4829 -1.6587 -5.2624 15 6 0.0299 0.0449 -6.4988 16 7 0.2358 1.3274 -6.6551 17 14 -1.3040 -0.8140 -7.4850 18 1 -1.3350 -2.2546 -7.1261 19 1 -2.6202 -0.1993 -7.1775 20 1 -1.0174 -0.6707 -8.9350 21 6 2.5589 -0.5877 -3.8894 22 6 4.0426 -1.4439 0.1114 23 6 3.4305 -0.6866 1.2940 24 6 3.9546 0.7535 1.3026 25 6 3.4002 1.4773 2.5337 26 6 3.7970 0.7037 3.7938 27 8 3.3030 -0.6343 3.7061 28 6 3.8234 -1.3771 2.6015 29 8 2.0077 -0.6760 1.1658 30 1 -0.3633 0.5121 0.8910 31 1 -0.3633 0.5155 -0.8890 32 1 -0.3632 -1.0277 -0.0020 33 1 1.5780 -1.7082 -1.3202 34 1 1.8036 -0.1403 -2.1375 35 1 5.3422 1.3490 -3.8143 36 1 4.4077 2.1178 -5.9526 37 1 2.3003 1.1830 -6.7930 38 1 -0.3045 1.8324 -7.2828 39 1 2.0459 -1.3447 -3.3148 40 1 5.1268 -1.3328 0.1259 41 1 3.7803 -2.4998 0.1764 42 1 3.6272 1.2677 0.3991 43 1 5.0438 0.7445 1.3446 44 1 2.3135 1.5309 2.4663 45 1 3.8124 2.4853 2.5800 46 1 4.8834 0.6850 3.8816 47 1 3.3700 1.1922 4.6697 48 1 4.9098 -1.4250 2.6751 49 1 3.4130 -2.3867 2.6169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373522387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:12 Heat of formation + Delta-G solvation = -110.638898 kcal Electronic energy + Delta-G solvation = -31931.078107 eV Core-core repulsion = 27822.452392 eV Total energy + Delta-G solvation = -4108.625715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.14956 -40.58146 -38.97851 -38.68269 -35.89896 -35.56224 -34.81281 -33.50042 -31.91303 -31.79249 -30.96276 -27.93111 -27.30218 -27.13679 -26.30088 -24.13035 -23.41123 -22.67290 -22.46056 -21.00383 -20.47318 -19.10699 -18.02240 -17.75983 -17.59799 -17.34146 -16.90129 -16.68406 -16.54819 -16.27596 -16.07730 -15.91119 -15.40501 -15.06823 -14.90461 -14.64658 -14.39305 -14.17989 -14.00641 -13.75859 -13.53308 -13.42738 -13.35385 -13.17710 -12.97374 -12.87064 -12.76665 -12.69922 -12.55237 -12.24197 -12.14991 -12.00729 -11.98033 -11.77101 -11.41375 -11.34680 -11.07334 -11.05687 -10.78151 -10.42418 -9.67700 -9.46999 -9.36028 -8.65190 -6.38238 0.40789 0.89809 1.42499 1.48299 1.56456 1.75419 1.95137 2.21844 2.46219 2.72425 2.96799 3.42925 3.54414 3.62539 3.65006 3.72309 3.78615 3.90997 4.01272 4.09908 4.28691 4.30598 4.34892 4.36861 4.42166 4.50024 4.53435 4.57861 4.59379 4.69233 4.73517 4.83105 4.88652 4.90748 4.91547 4.97318 5.01376 5.09090 5.12769 5.21137 5.25607 5.28831 5.34489 5.51625 5.76849 5.97049 6.00084 6.09861 6.17611 6.23905 6.26490 6.59528 6.88029 6.91050 7.05583 8.30541 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003247 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.543542 B = 8620.662935 C = 9543.861703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 H 0.055 0.945 4 C 0.065 3.935 5 N -0.603 5.603 6 C 0.569 3.431 7 O -0.579 6.579 8 C -0.120 4.120 9 C -0.192 4.192 10 C -0.111 4.111 11 C -0.164 4.164 12 C 0.077 3.923 13 C -0.486 4.486 14 H 0.082 0.918 15 C 0.040 3.960 16 N -0.820 5.820 17 Si 0.979 3.021 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.268 1.268 21 C -0.196 4.196 22 C 0.087 3.913 23 C 0.077 3.923 24 C -0.146 4.146 25 C -0.145 4.145 26 C 0.058 3.942 27 O -0.386 6.386 28 C 0.082 3.918 29 O -0.359 6.359 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.290 0.710 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -1.386 15.388 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 H 0.073 0.927 4 C -0.058 4.058 5 N -0.335 5.335 6 C 0.361 3.639 7 O -0.461 6.461 8 C -0.123 4.123 9 C -0.213 4.213 10 C -0.130 4.130 11 C -0.183 4.183 12 C 0.075 3.925 13 C -0.515 4.515 14 H 0.100 0.900 15 C -0.176 4.176 16 N -0.445 5.445 17 Si 0.800 3.200 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.193 1.193 21 C -0.215 4.215 22 C -0.035 4.035 23 C 0.037 3.963 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.018 4.018 27 O -0.304 6.304 28 C 0.004 3.996 29 O -0.279 6.279 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.128 0.872 48 H 0.105 0.895 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.751 -1.368 15.638 15.716 hybrid contribution -0.056 0.262 -1.396 1.421 sum 0.695 -1.106 14.242 14.302 Atomic orbital electron populations 1.21688 0.90591 1.03782 1.03324 1.22520 0.96593 0.95028 0.84130 0.92684 1.23158 0.78891 1.02760 1.00952 1.47928 1.07401 1.62489 1.15696 1.18749 0.85562 0.75578 0.84038 1.90635 1.15708 1.56712 1.83046 1.19498 0.97146 1.00947 0.94698 1.20557 1.00827 1.02358 0.97515 1.20892 0.96245 0.99885 0.95941 1.21621 0.94883 1.01058 1.00760 1.17866 0.92887 0.91569 0.90164 1.19837 1.04202 1.03924 1.23515 0.90003 1.26682 1.00163 0.94743 0.96021 1.69838 1.36996 1.08036 1.29648 0.85193 0.77198 0.79608 0.78015 1.18112 1.19045 1.19331 1.21486 0.96924 1.05575 0.97556 1.22311 1.00482 0.98148 0.82580 1.22538 0.82170 0.95681 0.95952 1.22139 1.01334 0.95727 0.99149 1.22078 1.01703 0.99966 0.94541 1.22748 0.99156 0.82065 0.97847 1.87957 1.70185 1.25402 1.46897 1.22583 0.99349 0.95651 0.81987 1.88009 1.19758 1.76965 1.43121 0.90697 0.90410 0.90993 0.89822 0.87484 0.87950 0.86440 0.86812 0.89953 0.86192 0.88720 0.89259 0.93091 0.90536 0.91814 0.89588 0.91799 0.87200 0.89469 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.57 71.98 0.69 -2.45 16 2 C 0.08 2.05 3.02 30.70 0.09 2.15 16 3 H 0.06 1.60 6.19 -2.39 -0.01 1.59 16 4 C 0.06 2.01 4.19 86.35 0.36 2.37 16 5 N -0.60 -20.23 2.60 -820.86 -2.14 -22.37 16 6 C 0.57 23.55 7.42 86.80 0.64 24.19 16 7 O -0.58 -26.31 16.23 -3.86 -0.06 -26.38 16 8 C -0.12 -5.39 5.36 -20.13 -0.11 -5.50 16 9 C -0.19 -8.78 9.61 22.70 0.22 -8.57 16 10 C -0.11 -5.08 10.01 22.18 0.22 -4.86 16 11 C -0.16 -8.16 8.70 22.77 0.20 -7.96 16 12 C 0.08 3.88 5.59 -21.32 -0.12 3.76 16 13 C -0.49 -23.89 9.06 23.47 0.21 -23.67 16 14 H 0.08 3.85 7.90 -2.91 -0.02 3.83 16 15 C 0.04 1.84 5.18 85.25 0.44 2.28 16 16 N -0.82 -39.56 10.80 21.82 0.24 -39.32 16 17 Si 0.98 35.36 29.59 68.60 2.03 37.39 16 18 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 19 H -0.27 -9.20 7.11 99.48 0.71 -8.50 16 20 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 21 C -0.20 -8.89 7.13 23.01 0.16 -8.72 16 22 C 0.09 2.37 5.32 86.32 0.46 2.83 16 23 C 0.08 1.85 0.71 -10.65 -0.01 1.85 16 24 C -0.15 -3.53 4.34 30.74 0.13 -3.40 16 25 C -0.15 -2.87 5.98 30.69 0.18 -2.69 16 26 C 0.06 0.99 6.84 72.01 0.49 1.48 16 27 O -0.39 -8.37 10.70 -142.18 -1.52 -9.89 16 28 C 0.08 1.58 5.81 71.98 0.42 2.00 16 29 O -0.36 -9.54 9.30 -142.18 -1.32 -10.87 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.44 7.94 -2.39 -0.02 2.42 16 34 H 0.11 3.88 4.56 -2.39 -0.01 3.87 16 35 H 0.10 4.49 7.96 -2.91 -0.02 4.47 16 36 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 37 H 0.11 5.88 6.01 -2.91 -0.02 5.86 16 38 H 0.29 12.62 8.30 -92.71 -0.77 11.85 16 39 H 0.12 4.99 5.72 -2.91 -0.02 4.98 16 40 H 0.09 2.69 7.06 -2.39 -0.02 2.67 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.49 6.05 -2.39 -0.01 1.48 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.43 7.84 -2.39 -0.02 1.41 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.04 379.39 2.88 -57.16 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.96 Total: 39.20 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.70 Total: -24.93 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -1.90 Total: -61.69 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -2.91 Total: -47.13 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -60.04 2.88 -57.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373522387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.477 kcal (2) G-P(sol) polarization free energy of solvation -60.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds