Wall clock time and date at job start Wed Apr 1 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99842 * 2 1 4 4 O 1.20824 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99965 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.29214 * 60.68328 * 5 3 2 7 7 C 1.54001 * 110.32575 * 298.54372 * 5 3 2 8 8 N 1.47480 * 107.08411 * 242.31257 * 7 5 3 9 9 C 1.34776 * 127.03447 * 154.51880 * 8 7 5 10 10 O 1.21286 * 120.00351 * 180.02562 * 9 8 7 11 11 C 1.50699 * 120.00091 * 0.02562 * 9 8 7 12 12 C 1.52997 * 109.47291 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47178 * 304.99738 * 12 11 9 14 14 C 1.50696 * 109.47295 * 65.00016 * 12 11 9 15 15 H 1.07996 * 119.99941 * 29.58663 * 14 12 11 16 16 C 1.37876 * 120.00285 * 209.58182 * 14 12 11 17 17 N 1.31515 * 120.00111 * 4.94677 * 16 14 12 18 18 Si 1.86805 * 120.00094 * 184.94334 * 16 14 12 19 19 H 1.48493 * 109.47313 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46678 * 120.00382 * 18 16 14 21 21 H 1.48501 * 109.47136 * 240.00172 * 18 16 14 22 22 C 1.50699 * 109.47128 * 184.99974 * 12 11 9 23 23 C 1.38229 * 120.00082 * 296.77151 * 22 12 11 24 24 C 1.38238 * 119.99951 * 179.74437 * 23 22 12 25 25 C 1.38236 * 120.00078 * 0.52744 * 24 23 22 26 26 C 1.38238 * 119.99989 * 359.74667 * 25 24 23 27 27 C 1.38240 * 119.99827 * 359.97438 * 26 25 24 28 28 C 1.48117 * 105.93351 * 334.77936 * 8 7 5 29 29 C 1.54596 * 103.42281 * 39.02384 * 28 8 7 30 30 H 1.09006 * 110.57232 * 81.16872 * 29 28 8 31 31 C 1.52999 * 110.98796 * 204.37163 * 29 28 8 32 32 H 1.09011 * 109.46979 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47564 * 299.99936 * 1 2 3 34 34 H 1.09005 * 109.47534 * 60.00351 * 1 2 3 35 35 H 1.09003 * 109.91500 * 122.95278 * 7 5 3 36 36 H 1.09001 * 110.07272 * 1.76373 * 7 5 3 37 37 H 1.09006 * 109.46895 * 60.00215 * 11 9 8 38 38 H 1.08996 * 109.46966 * 300.00364 * 11 9 8 39 39 H 0.96991 * 120.00343 * 180.02562 * 17 16 14 40 40 H 1.07994 * 120.00399 * 359.97438 * 23 22 12 41 41 H 1.07999 * 119.99958 * 180.29391 * 24 23 22 42 42 H 1.08003 * 120.00360 * 179.77104 * 25 24 23 43 43 H 1.07999 * 120.00292 * 180.02562 * 26 25 24 44 44 H 1.07996 * 119.99896 * 180.02562 * 27 26 25 45 45 H 1.09000 * 110.66122 * 157.50675 * 28 8 7 46 46 H 1.08998 * 110.66232 * 280.62255 * 28 8 7 47 47 H 1.08998 * 109.46675 * 173.64943 * 31 29 28 48 48 H 1.08997 * 109.47314 * 293.65200 * 31 29 28 49 49 H 1.08999 * 109.46896 * 53.65848 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9696 0.7950 -0.8923 7 6 4.1371 0.6136 1.2676 8 7 4.8481 1.6632 2.0211 9 6 5.0821 1.6927 3.3480 10 8 5.6838 2.6254 3.8372 11 6 4.5962 0.5669 4.2241 12 6 4.9890 0.8449 5.6765 13 1 6.0648 1.0092 5.7368 14 6 4.2650 2.0723 6.1665 15 1 3.2962 2.3254 5.7619 16 6 4.8394 2.8722 7.1316 17 7 6.0590 2.6201 7.5542 18 14 3.8852 4.3142 7.8387 19 1 2.5459 4.3820 7.2010 20 1 3.7268 4.1319 9.3039 21 1 4.6245 5.5746 7.5737 22 6 4.6124 -0.3361 6.5335 23 6 3.2848 -0.6967 6.6686 24 6 2.9399 -1.7832 7.4506 25 6 3.9216 -2.5025 8.1061 26 6 5.2488 -2.1385 7.9755 27 6 5.5943 -1.0555 7.1889 28 6 5.2468 2.6815 1.0221 29 6 4.0290 2.7484 0.0721 30 1 3.2468 3.3782 0.4960 31 6 4.4404 3.2561 -1.3113 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 4.8312 -0.1804 0.9920 36 1 3.3279 0.2053 1.8732 37 1 5.0494 -0.3691 3.8976 38 1 3.5115 0.4909 4.1496 39 1 6.4629 3.1826 8.2333 40 1 2.5174 -0.1318 6.1604 41 1 1.9031 -2.0678 7.5523 42 1 3.6518 -3.3492 8.7199 43 1 6.0159 -2.7008 8.4872 44 1 6.6311 -0.7713 7.0865 45 1 5.4131 3.6462 1.5015 46 1 6.1371 2.3613 0.4808 47 1 3.5910 3.1871 -1.9909 48 1 4.7623 4.2947 -1.2363 49 1 5.2608 2.6480 -1.6923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373551007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:28 Heat of formation + Delta-G solvation = -96.033633 kcal Electronic energy + Delta-G solvation = -30893.466674 eV Core-core repulsion = 26785.474291 eV Total energy + Delta-G solvation = -4107.992383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.99323 -39.40404 -38.38152 -37.33858 -36.43302 -33.97345 -32.78886 -31.39942 -30.63169 -30.00439 -28.95580 -27.70680 -26.68119 -25.15513 -24.17011 -22.63849 -21.74453 -21.55516 -20.01678 -19.80819 -18.58381 -17.81241 -17.16984 -16.69018 -16.50708 -16.21258 -15.67210 -15.51876 -14.91190 -14.50753 -14.19206 -14.01484 -13.91334 -13.79296 -13.56315 -13.24212 -13.08017 -12.62184 -12.58815 -12.48869 -12.40086 -12.15982 -12.10777 -11.85955 -11.66614 -11.60420 -11.33499 -11.16257 -11.00025 -10.87339 -10.84191 -10.68774 -10.57268 -10.52554 -10.25657 -10.03205 -9.42220 -9.11166 -8.85920 -8.35365 -8.26919 -8.04107 -7.61616 -5.91146 -3.90310 2.00290 2.29212 2.34574 2.46992 3.34089 3.38396 3.45500 3.48074 3.49313 4.11657 4.37237 4.53556 4.57492 4.75175 4.88474 4.91266 4.92829 4.99178 5.22004 5.28311 5.32579 5.34205 5.47880 5.53420 5.57298 5.63937 5.66716 5.73370 5.75260 5.84613 5.91771 5.98868 6.09257 6.13102 6.18729 6.24357 6.29172 6.41585 6.53004 6.56357 6.81680 6.92030 7.05035 7.31458 7.45471 7.53875 7.54745 7.90234 7.95284 8.00773 8.08751 8.39990 9.01688 9.09295 9.70887 11.18979 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009412 B = 0.003669 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.304261 B = 7630.559769 C = 8898.673157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.500 6.500 5 C -0.094 4.094 6 H 0.122 0.878 7 C 0.117 3.883 8 N -0.639 5.639 9 C 0.534 3.466 10 O -0.486 6.486 11 C -0.116 4.116 12 C 0.078 3.922 13 H 0.073 0.927 14 C -0.491 4.491 15 H 0.050 0.950 16 C 0.077 3.923 17 N -0.880 5.880 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.022 4.022 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.128 4.128 27 C -0.119 4.119 28 C 0.110 3.890 29 C -0.097 4.097 30 H 0.100 0.900 31 C -0.139 4.139 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.258 0.742 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -8.628 -16.797 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.386 6.386 5 C -0.114 4.114 6 H 0.140 0.860 7 C -0.007 4.007 8 N -0.379 5.379 9 C 0.323 3.677 10 O -0.356 6.356 11 C -0.156 4.156 12 C 0.059 3.941 13 H 0.091 0.909 14 C -0.528 4.528 15 H 0.068 0.932 16 C -0.126 4.126 17 N -0.517 5.517 18 Si 0.712 3.288 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.023 4.023 23 C -0.132 4.132 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.013 4.013 29 C -0.116 4.116 30 H 0.119 0.881 31 C -0.197 4.197 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.205 -7.727 -16.216 18.702 hybrid contribution -0.939 0.825 0.515 1.352 sum -6.145 -6.902 -15.701 18.218 Atomic orbital electron populations 1.23289 0.76188 1.03781 1.02632 1.86504 1.23544 1.33277 1.84068 1.23539 0.91770 0.81416 0.72121 1.90672 1.66893 1.36358 1.44702 1.22143 0.87551 0.99962 1.01715 0.85991 1.21814 0.97035 0.91083 0.90806 1.49104 1.59061 1.23064 1.06652 1.20680 0.79282 0.88776 0.78934 1.90790 1.38633 1.34915 1.71241 1.21771 1.01087 0.94709 0.98067 1.17853 1.00445 0.90346 0.85461 0.90854 1.20706 1.03528 1.06933 1.21654 0.93171 1.24805 0.94407 0.96793 0.96586 1.69907 1.12935 1.39151 1.29738 0.86667 0.80282 0.83078 0.78733 1.19936 1.21188 1.21085 1.20737 0.92254 0.93154 0.96125 1.20946 0.96606 0.96155 0.99529 1.20974 0.98133 0.96984 0.98938 1.20798 0.93435 1.00884 1.02200 1.20987 0.95750 0.98084 0.99825 1.21101 0.99593 0.94938 0.98045 1.22345 0.95463 0.94443 0.89076 1.22325 0.99014 0.93194 0.97108 0.88139 1.21728 1.01307 1.01779 0.94897 0.87980 0.91680 0.91997 0.90260 0.90170 0.91550 0.90683 0.93202 0.86947 0.87680 0.87802 0.87624 0.86777 0.89359 0.91279 0.92316 0.91670 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.55 101.05 1.07 1.35 16 2 O -0.36 -3.75 10.49 -39.25 -0.41 -4.16 16 3 C 0.47 5.58 7.05 36.01 0.25 5.84 16 4 O -0.50 -7.37 15.21 -18.75 -0.29 -7.66 16 5 C -0.09 -0.94 3.07 -90.40 -0.28 -1.22 16 6 H 0.12 0.85 7.85 -51.93 -0.41 0.44 16 7 C 0.12 1.35 6.39 -2.98 -0.02 1.33 16 8 N -0.64 -9.99 3.29 -169.98 -0.56 -10.55 16 9 C 0.53 10.94 7.64 -10.99 -0.08 10.86 16 10 O -0.49 -12.38 15.19 5.55 0.08 -12.30 16 11 C -0.12 -2.29 4.02 -27.88 -0.11 -2.40 16 12 C 0.08 1.87 1.68 -92.93 -0.16 1.72 16 13 H 0.07 2.02 6.95 -51.93 -0.36 1.66 16 14 C -0.49 -13.36 6.38 -34.44 -0.22 -13.58 16 15 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 17 N -0.88 -26.07 12.85 55.43 0.71 -25.36 16 18 Si 0.88 22.52 29.54 -169.99 -5.02 17.50 16 19 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 22 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 23 C -0.11 -2.31 8.86 -39.58 -0.35 -2.66 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 26 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 27 C -0.12 -2.50 9.67 -39.58 -0.38 -2.89 16 28 C 0.11 1.44 6.52 -2.31 -0.02 1.43 16 29 C -0.10 -1.08 2.97 -88.93 -0.26 -1.34 16 30 H 0.10 1.38 6.93 -51.93 -0.36 1.02 16 31 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 32 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.96 7.04 -51.93 -0.37 0.59 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.40 7.53 -51.93 -0.39 1.00 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.11 2.21 7.75 -52.49 -0.41 1.81 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.11 2.43 7.95 -52.49 -0.42 2.02 16 45 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 46 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -34.58 405.50 -9.11 -43.68 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.73 Total: 2.62 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.01 Total: -9.88 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.15 Total: -35.91 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.61 Total: -24.12 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.58 -9.11 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373551007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.349 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds