Wall clock time and date at job start Wed Apr 1 2020 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46977 * 2 1 4 4 C 1.34232 * 116.99452 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00530 * 0.02562 * 4 3 2 6 6 C 1.50710 * 119.99424 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.46860 * 299.99791 * 6 4 3 8 8 C 1.50699 * 109.46671 * 180.02562 * 6 4 3 9 9 O 1.21283 * 120.00267 * 359.97438 * 8 6 4 10 10 N 1.34780 * 119.99722 * 180.02562 * 8 6 4 11 11 C 1.46506 * 119.99848 * 180.02562 * 10 8 6 12 12 C 1.50704 * 109.46835 * 270.00022 * 11 10 8 13 13 H 1.08001 * 119.99793 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99943 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99771 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00044 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47363 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47235 * 120.00033 * 16 14 12 19 19 H 1.48504 * 109.47181 * 239.99537 * 16 14 12 20 20 C 1.46495 * 120.00190 * 359.97438 * 10 8 6 21 21 C 1.52996 * 109.47343 * 89.99786 * 20 10 8 22 22 C 1.53002 * 117.49888 * 116.25574 * 21 20 10 23 23 C 1.53000 * 117.50107 * 184.91336 * 21 20 10 24 24 C 1.50699 * 109.46907 * 60.00343 * 6 4 3 25 25 C 1.38235 * 119.99901 * 59.72934 * 24 6 4 26 26 C 1.38242 * 119.99410 * 179.78881 * 25 24 6 27 27 C 1.38233 * 120.00029 * 0.43028 * 26 25 24 28 28 C 1.38231 * 119.99991 * 359.82061 * 27 26 25 29 29 C 1.38227 * 120.00205 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47370 * 59.99388 * 1 2 3 31 31 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46822 * 299.99579 * 1 2 3 33 33 H 1.09001 * 109.46822 * 240.00421 * 2 1 3 34 34 H 1.08998 * 109.47370 * 120.00612 * 2 1 3 35 35 H 1.08997 * 109.47257 * 29.99742 * 11 10 8 36 36 H 1.08997 * 109.47145 * 150.00052 * 11 10 8 37 37 H 0.97000 * 119.99567 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47043 * 329.99683 * 20 10 8 39 39 H 1.09004 * 109.47109 * 210.00237 * 20 10 8 40 40 H 1.09002 * 115.54951 * 330.58548 * 21 20 10 41 41 H 1.09000 * 117.49996 * 215.00804 * 22 21 20 42 42 H 1.08999 * 117.49664 * 0.02562 * 22 21 20 43 43 H 1.09008 * 117.49673 * 359.97438 * 23 21 20 44 44 H 1.08999 * 117.49959 * 144.99502 * 23 21 20 45 45 H 1.08000 * 120.00412 * 359.97438 * 25 24 6 46 46 H 1.07999 * 119.99792 * 180.27572 * 26 25 24 47 47 H 1.08002 * 119.99809 * 179.83746 * 27 26 25 48 48 H 1.08006 * 120.00021 * 179.97438 * 28 27 26 49 49 H 1.08006 * 120.00100 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4700 -0.8895 8 6 5.4256 2.8585 -0.0014 9 8 5.9762 1.7778 -0.0022 10 7 6.1597 3.9888 -0.0007 11 6 7.6227 3.9121 -0.0026 12 6 8.1261 3.8837 1.4176 13 1 7.4262 3.9197 2.2394 14 6 9.4801 3.8129 1.6678 15 7 10.3323 3.7696 0.6671 16 14 10.1041 3.7785 3.4281 17 1 8.9518 3.8369 4.3630 18 1 10.8652 2.5244 3.6591 19 1 10.9914 4.9461 3.6617 20 6 5.4947 5.2941 0.0009 21 6 5.2638 5.7472 1.4439 22 6 5.9846 7.0134 1.9107 23 6 4.4747 7.0399 1.6609 24 6 3.4569 3.6723 1.2312 25 6 3.7615 3.1794 2.4862 26 6 3.3397 3.8560 3.6155 27 6 2.6057 5.0205 3.4898 28 6 2.2966 5.5106 2.2347 29 6 2.7220 4.8364 1.1055 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 7.9383 3.0051 -0.5181 36 1 8.0315 4.7826 -0.5156 37 1 11.2849 3.7194 0.8431 38 1 4.5365 5.2143 -0.5126 39 1 6.1225 6.0224 -0.5126 40 1 5.1293 4.9472 2.1720 41 1 6.3244 7.0465 2.9459 42 1 6.6230 7.5239 1.1896 43 1 4.1204 7.5679 0.7755 44 1 3.8210 7.0904 2.5316 45 1 4.3316 2.2674 2.5845 46 1 3.5815 3.4733 4.5961 47 1 2.2739 5.5477 4.3721 48 1 1.7228 6.4203 2.1364 49 1 2.4809 5.2195 0.1249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416148056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:23 Heat of formation + Delta-G solvation = -49.046299 kcal Electronic energy + Delta-G solvation = -32560.011035 eV Core-core repulsion = 28454.056175 eV Total energy + Delta-G solvation = -4105.954860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.03622 -39.63444 -38.37795 -36.88345 -36.16638 -34.29734 -33.44141 -32.28965 -31.59669 -30.87646 -28.46060 -27.67765 -25.89322 -23.83038 -22.85238 -22.59825 -22.10231 -21.76845 -20.90146 -20.50540 -18.32484 -17.74305 -17.05539 -16.53839 -16.44504 -16.20014 -15.89749 -15.42427 -15.09361 -14.81744 -14.45666 -14.27767 -14.10490 -14.00134 -13.44590 -13.28913 -13.17459 -12.86377 -12.68307 -12.56271 -12.25739 -12.12266 -11.97234 -11.85908 -11.63100 -11.31279 -11.21764 -11.10483 -10.98562 -10.93810 -10.84093 -10.61284 -10.46626 -10.26150 -10.17295 -9.94663 -9.52074 -9.45841 -9.03699 -8.56848 -8.37233 -8.35050 -7.64429 -5.98229 -4.00403 1.35071 1.51570 2.42580 2.61164 3.31727 3.32735 3.40782 3.44899 3.79251 3.98429 4.30974 4.49770 4.65329 4.74179 4.81569 4.85434 4.91113 4.98735 5.05977 5.18855 5.19278 5.21516 5.25134 5.34728 5.37974 5.52213 5.54903 5.61453 5.65220 5.68745 5.82025 5.82539 5.92343 5.92914 5.99230 6.11016 6.14457 6.36307 6.50271 6.51648 6.53226 6.59284 6.61908 6.77364 7.04175 7.08461 7.46401 7.57587 7.98492 8.00353 8.29857 8.37912 8.94681 9.09756 9.63370 11.10440 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.004747 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.719953 B = 5897.571987 C = 7197.071160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.453 6.453 6 C -0.064 4.064 7 H 0.129 0.871 8 C 0.513 3.487 9 O -0.495 6.495 10 N -0.587 5.587 11 C 0.249 3.751 12 C -0.511 4.511 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.143 3.857 21 C -0.153 4.153 22 C -0.170 4.170 23 C -0.186 4.186 24 C -0.065 4.065 25 C -0.103 4.103 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.106 4.106 29 C -0.089 4.089 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.750 4.251 0.346 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.335 6.335 6 C -0.086 4.086 7 H 0.147 0.853 8 C 0.296 3.704 9 O -0.369 6.369 10 N -0.319 5.319 11 C 0.130 3.870 12 C -0.550 4.550 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C 0.019 3.981 21 C -0.172 4.172 22 C -0.207 4.207 23 C -0.223 4.223 24 C -0.066 4.066 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.124 4.124 29 C -0.107 4.107 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.989 3.294 0.284 21.248 hybrid contribution 0.625 -0.004 1.065 1.235 sum -20.365 3.290 1.349 20.673 Atomic orbital electron populations 1.21782 0.92805 1.02706 1.03394 1.22967 0.95080 0.80608 1.02603 1.86486 1.24489 1.31952 1.84753 1.22788 0.80671 0.91632 0.74393 1.90831 1.59517 1.41730 1.41415 1.20090 0.96608 0.91773 1.00171 0.85347 1.19342 0.86369 0.85371 0.79325 1.90839 1.71532 1.26952 1.47537 1.48095 1.09160 1.03487 1.71124 1.19324 0.71554 0.98336 0.97755 1.21409 0.91624 1.49765 0.92183 0.92295 1.24890 0.96771 0.95398 0.97024 1.69939 1.02287 1.51024 1.30438 0.86520 0.78773 0.77495 0.85107 1.19875 1.21044 1.21099 1.21097 0.96597 0.86024 0.94381 1.22981 1.03404 0.92019 0.98796 1.22945 0.93813 1.01913 1.02078 1.23204 0.94655 1.01793 1.02694 1.18957 0.99351 0.96011 0.92261 1.21015 0.98836 1.00284 0.91994 1.21036 0.98211 0.95704 0.98255 1.21084 0.98946 0.96429 0.97400 1.20923 0.99868 0.99322 0.92291 1.20847 0.96836 0.94091 0.98917 0.91576 0.90455 0.91543 0.91342 0.91353 0.93869 0.94960 0.92943 0.91727 0.90633 0.86815 0.89610 0.89196 0.89560 0.88823 0.86198 0.86197 0.86366 0.86005 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.05 10.14 -39.26 -0.40 -5.45 16 4 C 0.47 8.01 6.87 36.01 0.25 8.26 16 5 O -0.45 -9.62 13.93 -26.86 -0.37 -10.00 16 6 C -0.06 -1.02 2.06 -94.07 -0.19 -1.22 16 7 H 0.13 1.62 7.14 -51.93 -0.37 1.25 16 8 C 0.51 10.89 6.71 -10.98 -0.07 10.81 16 9 O -0.50 -13.05 13.77 -18.96 -0.26 -13.31 16 10 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 11 C 0.25 6.46 5.20 -5.19 -0.03 6.43 16 12 C -0.51 -14.31 9.39 -34.44 -0.32 -14.63 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 16 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 20 C 0.14 2.29 5.22 -4.05 -0.02 2.27 16 21 C -0.15 -2.36 3.33 -90.62 -0.30 -2.66 16 22 C -0.17 -2.58 10.18 -26.69 -0.27 -2.85 16 23 C -0.19 -2.21 7.69 -26.70 -0.21 -2.41 16 24 C -0.07 -0.92 2.41 -104.62 -0.25 -1.17 16 25 C -0.10 -1.60 7.45 -39.58 -0.29 -1.89 16 26 C -0.11 -1.48 9.43 -39.58 -0.37 -1.85 16 27 C -0.12 -1.29 9.54 -39.59 -0.38 -1.67 16 28 C -0.11 -1.04 6.43 -39.59 -0.25 -1.30 16 29 C -0.09 -0.98 5.99 -39.59 -0.24 -1.22 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 34 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 0.82 4.99 -51.93 -0.26 0.56 16 39 H 0.08 1.20 7.63 -51.93 -0.40 0.80 16 40 H 0.11 2.01 4.61 -51.93 -0.24 1.77 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 43 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 45 H 0.12 2.16 8.05 -52.49 -0.42 1.74 16 46 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 49 H 0.12 1.08 7.55 -52.48 -0.40 0.68 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -35.14 390.75 -9.68 -44.81 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.37 Total: 2.96 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.44 Total: -3.35 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.31 Total: -38.75 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.03 Total: -28.76 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.14 -9.68 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416148056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.233 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds