Wall clock time and date at job start Wed Apr 1 2020 04:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.46922 * 2 1 4 4 C 1.34229 * 116.99696 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00110 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99882 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.46858 * 59.99809 * 6 4 3 8 8 C 1.50695 * 109.47142 * 179.97438 * 6 4 3 9 9 O 1.21277 * 120.00287 * 359.97438 * 8 6 4 10 10 N 1.34779 * 120.00125 * 179.97438 * 8 6 4 11 11 C 1.46494 * 120.00316 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.47370 * 270.00247 * 11 10 8 13 13 H 1.08001 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00002 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00061 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47134 * 89.99960 * 16 14 12 18 18 H 1.48502 * 109.47450 * 209.99546 * 16 14 12 19 19 H 1.48495 * 109.47412 * 330.00058 * 16 14 12 20 20 C 1.46504 * 119.99616 * 0.02562 * 10 8 6 21 21 C 1.53006 * 109.46883 * 269.99507 * 20 10 8 22 22 C 1.53001 * 117.49995 * 243.75071 * 21 20 10 23 23 C 1.53001 * 117.49740 * 175.08890 * 21 20 10 24 24 C 1.50702 * 109.47150 * 300.00150 * 6 4 3 25 25 C 1.38229 * 119.99682 * 299.72498 * 24 6 4 26 26 C 1.38233 * 120.00144 * 179.78825 * 25 24 6 27 27 C 1.38240 * 119.99892 * 0.44375 * 26 25 24 28 28 C 1.38241 * 119.99753 * 359.80694 * 27 26 25 29 29 C 1.38234 * 120.00017 * 119.99967 * 24 6 4 30 30 H 1.08995 * 109.47416 * 60.00350 * 1 2 3 31 31 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47493 * 300.00259 * 1 2 3 33 33 H 1.08993 * 109.47179 * 239.99908 * 2 1 3 34 34 H 1.09005 * 109.46997 * 119.99957 * 2 1 3 35 35 H 1.09002 * 109.47065 * 30.00245 * 11 10 8 36 36 H 1.09000 * 109.47308 * 150.00078 * 11 10 8 37 37 H 0.97006 * 119.99952 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.46891 * 149.99941 * 20 10 8 39 39 H 1.08993 * 109.47378 * 29.99313 * 20 10 8 40 40 H 1.09004 * 115.54324 * 29.41969 * 21 20 10 41 41 H 1.09001 * 117.49892 * 359.97438 * 22 21 20 42 42 H 1.09004 * 117.49576 * 145.02113 * 22 21 20 43 43 H 1.09000 * 117.49563 * 214.97971 * 23 21 20 44 44 H 1.09000 * 117.49822 * 0.02562 * 23 21 20 45 45 H 1.08008 * 120.00089 * 359.97438 * 25 24 6 46 46 H 1.08000 * 120.00697 * 180.27097 * 26 25 24 47 47 H 1.07998 * 120.00151 * 179.83161 * 27 26 25 48 48 H 1.07995 * 120.00249 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00083 * 359.97438 * 29 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5850 3.4698 0.8888 8 6 5.4256 2.8586 -0.0010 9 8 5.9762 1.7780 0.0000 10 7 6.1596 3.9889 -0.0021 11 6 7.6226 3.9123 -0.0014 12 6 8.1237 3.8876 1.4196 13 1 7.4226 3.9256 2.2402 14 6 9.4773 3.8175 1.6722 15 7 10.3312 3.7717 0.6729 16 14 10.0985 3.7877 3.4336 17 1 10.1904 2.3815 3.9023 18 1 11.4413 4.4188 3.4958 19 1 9.1578 4.5387 4.3031 20 6 5.4945 5.2942 -0.0027 21 6 5.2625 5.7477 -1.4455 22 6 5.9830 7.0141 -1.9125 23 6 4.4732 7.0405 -1.6614 24 6 3.4557 3.6728 -1.2317 25 6 3.7689 3.1864 -2.4871 26 6 3.3388 3.8585 -3.6158 27 6 2.6032 5.0221 -3.4891 28 6 2.2944 5.5113 -2.2336 29 6 2.7210 4.8368 -1.1049 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 7.9391 3.0040 -0.5141 36 1 8.0322 4.7815 -0.5160 37 1 11.2835 3.7221 0.8506 38 1 6.1227 6.0224 0.5105 39 1 4.5367 5.2143 0.5114 40 1 5.1275 4.9478 -2.1736 41 1 6.6220 7.5244 -1.1918 42 1 6.3216 7.0475 -2.9481 43 1 3.8192 7.0913 -2.5320 44 1 4.1196 7.5681 -0.7757 45 1 4.3472 2.2795 -2.5861 46 1 3.5797 3.4761 -4.5967 47 1 2.2694 5.5487 -4.3710 48 1 1.7202 6.4205 -2.1345 49 1 2.4797 5.2190 -0.1240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416148063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:26 Heat of formation + Delta-G solvation = -70.553201 kcal Electronic energy + Delta-G solvation = -32207.498808 eV Core-core repulsion = 28100.611339 eV Total energy + Delta-G solvation = -4106.887469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.37498 -40.87516 -39.79226 -38.14902 -37.51036 -36.06084 -35.00164 -34.08473 -32.48601 -31.81015 -29.96722 -29.26884 -27.46399 -25.40842 -24.25087 -23.56954 -23.14733 -22.86463 -22.26912 -21.80242 -19.86702 -19.01963 -18.65995 -18.13539 -17.82854 -17.65901 -17.16333 -16.79613 -16.51063 -16.19043 -16.00249 -15.63032 -15.23761 -15.15131 -14.76864 -14.59227 -14.34645 -14.21255 -14.09081 -13.62082 -13.60190 -13.47587 -13.37062 -13.19882 -12.90908 -12.88119 -12.62527 -12.52545 -12.38019 -12.24980 -12.20871 -12.06978 -11.91336 -11.69967 -11.54767 -11.50040 -11.29120 -10.78201 -10.65901 -10.55799 -9.55764 -9.48775 -9.41403 -8.23226 -6.38253 0.37371 0.57780 1.08848 1.34095 1.36383 1.38821 1.47830 1.71616 2.29665 2.43633 2.86889 3.06453 3.11895 3.43221 3.52101 3.67915 3.82157 3.97474 4.02197 4.08336 4.13120 4.15381 4.25203 4.31809 4.33477 4.39287 4.55996 4.64935 4.68444 4.75203 4.81965 4.90498 4.92459 4.95684 5.00976 5.04363 5.12130 5.16881 5.20498 5.21529 5.38804 5.41859 5.46125 5.58098 5.62392 5.64021 5.69175 5.84367 6.04610 6.16061 6.65146 6.69410 6.73041 7.25590 7.42003 8.84128 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004564 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.666021 B = 6133.899687 C = 8248.962728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.346 6.346 4 C 0.470 3.530 5 O -0.506 6.506 6 C -0.053 4.053 7 H 0.164 0.836 8 C 0.505 3.495 9 O -0.563 6.563 10 N -0.586 5.586 11 C 0.270 3.730 12 C -0.543 4.543 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.967 3.033 17 H -0.284 1.284 18 H -0.273 1.273 19 H -0.258 1.258 20 C 0.138 3.862 21 C -0.185 4.185 22 C -0.201 4.201 23 C -0.131 4.131 24 C -0.078 4.078 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.110 4.110 28 C -0.094 4.094 29 C -0.083 4.083 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.063 0.937 35 H -0.011 1.011 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.151 0.849 48 H 0.166 0.834 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.727 7.935 -5.990 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.311 3.689 5 O -0.392 6.392 6 C -0.075 4.075 7 H 0.181 0.819 8 C 0.291 3.709 9 O -0.442 6.442 10 N -0.317 5.317 11 C 0.149 3.851 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.791 3.209 17 H -0.210 1.210 18 H -0.198 1.198 19 H -0.182 1.182 20 C 0.016 3.984 21 C -0.204 4.204 22 C -0.238 4.238 23 C -0.168 4.168 24 C -0.079 4.079 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.128 4.128 28 C -0.111 4.111 29 C -0.101 4.101 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.007 0.993 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.143 0.857 47 H 0.169 0.831 48 H 0.184 0.816 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.027 7.046 -6.029 26.690 hybrid contribution 1.763 -1.177 0.655 2.218 sum -23.264 5.869 -5.374 24.588 Atomic orbital electron populations 1.21791 0.89251 1.04454 1.04074 1.23326 0.97711 0.79266 1.02030 1.86477 1.22385 1.33535 1.83915 1.23073 0.81345 0.91609 0.72899 1.90815 1.60926 1.43426 1.44061 1.19966 0.92049 0.92100 1.03338 0.81857 1.20234 0.88860 0.84239 0.77536 1.90794 1.73509 1.29409 1.50439 1.48004 1.07243 1.05838 1.70585 1.18654 0.75246 0.95248 0.95939 1.21709 0.92357 1.51125 0.92917 0.92621 1.25866 0.96858 0.94375 1.02002 1.70067 1.02789 1.50861 1.33103 0.85423 0.78093 0.78132 0.79215 1.21001 1.19819 1.18168 1.21403 0.97856 0.83429 0.95731 1.22924 1.07352 0.92835 0.97267 1.23117 0.97192 1.01836 1.01661 1.23320 0.92323 0.96667 1.04450 1.18842 1.01311 0.97461 0.90243 1.20824 1.00720 0.99813 0.93893 1.21169 0.98820 0.96682 0.97427 1.21487 0.97059 0.95046 0.99194 1.21440 0.98500 1.00119 0.91079 1.21231 0.95216 0.92314 1.01335 0.90963 0.88183 0.90671 0.92265 0.91864 0.99328 0.95811 0.92452 0.90908 0.88033 0.88426 0.89897 0.89738 0.86303 0.86666 0.90769 0.85654 0.83100 0.81621 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.35 -9.76 10.14 -51.41 -0.52 -10.28 16 4 C 0.47 17.02 6.89 71.24 0.49 17.51 16 5 O -0.51 -23.58 13.93 29.73 0.41 -23.17 16 6 C -0.05 -1.72 2.06 -13.03 -0.03 -1.75 16 7 H 0.16 4.08 7.14 -2.39 -0.02 4.07 16 8 C 0.51 23.13 6.69 87.65 0.59 23.72 16 9 O -0.56 -32.94 13.76 20.42 0.28 -32.65 16 10 N -0.59 -26.10 2.46 -826.16 -2.03 -28.13 16 11 C 0.27 15.30 5.16 85.63 0.44 15.74 16 12 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 13 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 14 C 0.01 0.47 5.46 84.65 0.46 0.93 16 15 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 16 Si 0.97 46.15 29.54 68.60 2.03 48.18 16 17 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.14 4.35 5.18 86.38 0.45 4.80 16 21 C -0.18 -4.89 3.33 -10.79 -0.04 -4.93 16 22 C -0.20 -5.01 10.18 30.62 0.31 -4.70 16 23 C -0.13 -2.16 7.69 30.62 0.24 -1.93 16 24 C -0.08 -2.01 2.43 -19.87 -0.05 -2.06 16 25 C -0.13 -3.87 7.40 22.27 0.16 -3.71 16 26 C -0.12 -2.63 9.44 22.27 0.21 -2.42 16 27 C -0.11 -1.56 9.54 22.27 0.21 -1.35 16 28 C -0.09 -1.10 6.44 22.27 0.14 -0.96 16 29 C -0.08 -1.36 5.99 22.27 0.13 -1.23 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16 35 H -0.01 -0.76 7.42 -2.39 -0.02 -0.78 16 36 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 37 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 38 H 0.07 2.44 7.81 -2.39 -0.02 2.42 16 39 H 0.10 2.42 4.99 -2.39 -0.01 2.41 16 40 H 0.10 2.97 4.59 -2.39 -0.01 2.96 16 41 H 0.08 2.23 8.03 -2.39 -0.02 2.21 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.12 1.47 5.88 -2.39 -0.01 1.46 16 44 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 2.74 8.05 -2.91 -0.02 2.72 16 46 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 48 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 49 H 0.15 1.64 7.56 -2.91 -0.02 1.62 16 Total: -1.00 -87.67 390.98 6.56 -81.11 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.95 Total: 16.61 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.16 Total: 6.04 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -1.74 Total: -85.83 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: 0.17 Total: -66.10 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -87.67 6.56 -81.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416148063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.558 kcal (2) G-P(sol) polarization free energy of solvation -87.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds