Wall clock time and date at job start Wed Apr 1 2020 04:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20753 * 120.00116 * 2 1 4 4 C 1.50704 * 120.00096 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47273 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.47099 * 180.02562 * 5 4 2 7 7 C 1.38261 * 119.94786 * 89.99786 * 6 5 4 8 8 C 1.38149 * 120.05760 * 180.02562 * 7 6 5 9 9 C 1.38728 * 119.94322 * 359.97438 * 8 7 6 10 10 O 1.35898 * 120.05692 * 180.02562 * 9 8 7 11 11 C 1.42895 * 117.00373 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47405 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00330 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00258 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47269 * 184.79147 * 15 14 12 17 17 C 1.50694 * 115.55114 * 294.81128 * 16 15 14 18 18 H 1.08008 * 119.99906 * 95.20873 * 17 16 15 19 19 C 1.37875 * 120.00314 * 274.92789 * 17 16 15 20 20 N 1.31509 * 119.99913 * 355.42420 * 19 17 16 21 21 Si 1.86807 * 120.00040 * 175.41703 * 19 17 16 22 22 H 1.48494 * 109.47052 * 60.00642 * 21 19 17 23 23 H 1.48500 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47106 * 300.00083 * 21 19 17 25 25 C 1.53003 * 117.49834 * 80.48431 * 16 15 14 26 26 C 1.53006 * 117.49908 * 149.14426 * 16 15 14 27 27 C 1.38733 * 119.88800 * 0.28034 * 9 8 7 28 28 C 1.38147 * 119.94485 * 359.46645 * 27 9 8 29 29 H 1.09003 * 109.46734 * 269.99743 * 1 2 3 30 30 H 1.08997 * 109.47270 * 29.99707 * 1 2 3 31 31 H 1.09000 * 109.47367 * 149.99873 * 1 2 3 32 32 H 1.08999 * 109.46959 * 59.99622 * 4 2 1 33 33 H 1.08998 * 109.46769 * 300.00094 * 4 2 1 34 34 H 1.08999 * 109.47379 * 59.99950 * 5 4 2 35 35 H 1.09004 * 109.46909 * 299.99816 * 5 4 2 36 36 H 1.08003 * 119.97398 * 0.02562 * 7 6 5 37 37 H 1.08001 * 120.02503 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.47210 * 59.99485 * 11 10 9 39 39 H 1.09009 * 109.47039 * 300.00261 * 11 10 9 40 40 H 0.96999 * 119.99637 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47395 * 64.78624 * 15 14 12 42 42 H 1.09007 * 109.47080 * 304.78945 * 15 14 12 43 43 H 0.97001 * 119.99960 * 184.99387 * 20 19 17 44 44 H 1.09003 * 117.50034 * 214.99852 * 25 16 15 45 45 H 1.09002 * 117.49971 * 0.02686 * 25 16 15 46 46 H 1.08996 * 117.49810 * 359.97342 * 26 16 15 47 47 H 1.08995 * 117.50078 * 144.97442 * 26 16 15 48 48 H 1.08002 * 120.02632 * 179.71565 * 27 9 8 49 49 H 1.07999 * 119.97386 * 180.23047 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5182 -2.3307 -0.0023 7 6 4.8627 -2.9277 -1.2009 8 6 5.5529 -4.1243 -1.2046 9 6 5.9009 -4.7268 -0.0044 10 8 6.5804 -5.9037 -0.0054 11 6 6.9049 -6.4666 1.2672 12 6 7.6524 -7.7600 1.0687 13 8 7.8840 -8.1606 -0.0523 14 7 8.0627 -8.4721 2.1369 15 6 8.7898 -9.7291 1.9439 16 6 9.0319 -10.3919 3.3014 17 6 9.9376 -9.6378 4.2406 18 1 9.5155 -8.9799 4.9859 19 6 11.3048 -9.7922 4.1522 20 7 11.8151 -10.6640 3.3102 21 14 12.4325 -8.7627 5.2284 22 1 12.1329 -9.0308 6.6579 23 1 13.8465 -9.1159 4.9439 24 1 12.2145 -7.3227 4.9386 25 6 7.8762 -11.1830 3.9175 26 6 9.0877 -11.9204 3.3414 27 6 5.5494 -4.1284 1.1969 28 6 4.8638 -2.9291 1.1953 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9972 -1.8763 -0.8908 33 1 1.9972 -1.8770 0.8891 34 1 4.0284 -0.4542 0.8889 35 1 4.0277 -0.4538 -0.8911 36 1 4.5919 -2.4581 -2.1350 37 1 5.8214 -4.5904 -2.1412 38 1 5.9877 -6.6584 1.8243 39 1 7.5293 -5.7684 1.8248 40 1 7.8771 -8.1519 3.0335 41 1 9.7466 -9.5253 1.4632 42 1 8.2015 -10.3962 1.3137 43 1 12.7716 -10.8249 3.2989 44 1 7.7710 -11.1580 5.0021 45 1 6.9435 -11.2316 3.3554 46 1 8.9514 -12.4538 2.4007 47 1 9.7797 -12.3805 4.0467 48 1 5.8152 -4.5978 2.1326 49 1 4.5932 -2.4611 2.1302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431100980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:39 Heat of formation + Delta-G solvation = -75.334107 kcal Electronic energy + Delta-G solvation = -28283.674523 eV Core-core repulsion = 24176.579739 eV Total energy + Delta-G solvation = -4107.094785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.50873 -39.89431 -39.07315 -37.68615 -36.64562 -33.90386 -33.43983 -32.02172 -31.34075 -31.10516 -29.48439 -28.33017 -26.07796 -25.07314 -24.36668 -22.95965 -21.30299 -21.15009 -19.98294 -19.94884 -19.38416 -18.40382 -17.14930 -16.54025 -16.32373 -16.24082 -15.96492 -15.65474 -15.48823 -15.15534 -14.85141 -14.73648 -14.36597 -14.31229 -13.94488 -13.79340 -13.47706 -13.24997 -13.02414 -12.90136 -12.77329 -12.56307 -12.45871 -12.27182 -11.80425 -11.68247 -11.64180 -11.49752 -11.04909 -11.01708 -10.98640 -10.97522 -10.59546 -10.29355 -10.08091 -9.68956 -9.39761 -9.20429 -9.11330 -8.55761 -8.38265 -8.23466 -8.18575 -6.12859 -4.23537 1.13894 1.20584 1.52150 2.74881 2.97976 3.22751 3.29406 3.30205 3.46215 3.67352 3.97187 4.30161 4.45761 4.50677 4.63040 4.65252 4.72250 4.76067 4.87650 4.92934 5.05084 5.06610 5.10185 5.14100 5.15241 5.20115 5.23116 5.32495 5.43539 5.51357 5.58399 5.73297 5.83596 5.95662 6.08226 6.17610 6.27037 6.39879 6.40093 6.47945 6.56705 6.64233 6.77471 7.06527 7.06608 7.11853 7.28273 7.31951 7.47460 7.75073 8.10961 8.26856 8.68190 8.77984 9.44126 10.94167 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.001661 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.356805 B =16855.103243 C =17304.633713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.353 3.647 3 O -0.460 6.460 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.129 4.129 7 C -0.076 4.076 8 C -0.148 4.148 9 C 0.133 3.867 10 O -0.288 6.288 11 C 0.041 3.959 12 C 0.506 3.494 13 O -0.534 6.534 14 N -0.698 5.698 15 C 0.165 3.835 16 C 0.022 3.978 17 C -0.503 4.503 18 H 0.060 0.940 19 C 0.074 3.926 20 N -0.873 5.873 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.211 4.211 26 C -0.141 4.141 27 C -0.208 4.208 28 C -0.075 4.075 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.402 0.598 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.130 0.870 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 16.761 -4.561 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.229 3.771 3 O -0.334 6.334 4 C -0.206 4.206 5 C -0.103 4.103 6 C -0.130 4.130 7 C -0.094 4.094 8 C -0.166 4.166 9 C 0.087 3.913 10 O -0.200 6.200 11 C -0.038 4.038 12 C 0.289 3.711 13 O -0.411 6.411 14 N -0.349 5.349 15 C 0.042 3.958 16 C 0.021 3.979 17 C -0.540 4.540 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.509 5.509 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.248 4.248 26 C -0.179 4.179 27 C -0.227 4.227 28 C -0.093 4.093 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.236 0.764 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.148 0.852 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.751 16.845 -5.658 26.568 hybrid contribution 0.594 0.449 1.354 1.545 sum -19.157 17.294 -4.304 26.165 Atomic orbital electron populations 1.22313 0.94532 1.04815 1.04719 1.24715 0.91997 0.90371 0.70036 1.90426 1.71991 1.35278 1.35672 1.22195 0.95964 0.97278 1.05141 1.20297 0.92172 0.93899 1.03915 1.19696 1.02413 0.97674 0.93170 1.20821 0.96787 0.94121 0.97701 1.20458 1.02873 0.96743 0.96563 1.19138 0.92176 0.85701 0.94309 1.86181 1.69999 1.33858 1.29920 1.22570 1.00678 0.95195 0.85344 1.19879 0.80521 0.84944 0.85751 1.90712 1.56498 1.70184 1.23738 1.45848 1.56544 1.24329 1.08186 1.21052 0.94721 0.82290 0.97687 1.19049 0.95306 0.91029 0.92522 1.20293 0.89994 1.26969 1.16776 0.92209 1.24995 0.98143 0.95037 0.94899 1.69971 1.12726 1.32794 1.35402 0.86682 0.79847 0.80911 0.80686 1.20265 1.21233 1.20147 1.23027 0.92341 1.10115 0.99299 1.22471 0.98624 0.96361 1.00437 1.21308 1.05462 0.98748 0.97203 1.20808 0.96587 0.94241 0.97635 0.88645 0.89779 0.89587 0.88134 0.88147 0.90627 0.90602 0.85483 0.84966 0.89235 0.89038 0.76359 0.91223 0.93931 0.92724 0.90332 0.91691 0.91755 0.89445 0.85188 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.68 10.25 36.01 0.37 -0.31 16 2 C 0.35 2.17 7.27 -29.03 -0.21 1.96 16 3 O -0.46 -4.70 16.72 6.00 0.10 -4.60 16 4 C -0.17 -0.85 5.61 -27.88 -0.16 -1.01 16 5 C -0.07 -0.47 4.63 -27.89 -0.13 -0.60 16 6 C -0.13 -1.11 5.13 -104.60 -0.54 -1.65 16 7 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 8 C -0.15 -1.66 9.99 -39.43 -0.39 -2.05 16 9 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 10 O -0.29 -4.39 9.67 -39.33 -0.38 -4.77 16 11 C 0.04 0.55 5.22 36.00 0.19 0.74 16 12 C 0.51 9.16 7.91 -10.98 -0.09 9.07 16 13 O -0.53 -12.05 16.50 -14.35 -0.24 -12.28 16 14 N -0.70 -12.75 5.48 -60.30 -0.33 -13.08 16 15 C 0.17 3.61 5.50 -4.05 -0.02 3.59 16 16 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 17 C -0.50 -12.47 8.59 -34.44 -0.30 -12.77 16 18 H 0.06 1.44 7.82 -52.48 -0.41 1.03 16 19 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 20 N -0.87 -23.73 12.65 55.43 0.70 -23.02 16 21 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.21 -4.22 9.96 -26.69 -0.27 -4.48 16 26 C -0.14 -3.14 9.14 -26.69 -0.24 -3.39 16 27 C -0.21 -2.17 9.04 -39.43 -0.36 -2.53 16 28 C -0.07 -0.67 9.69 -39.60 -0.38 -1.05 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.13 8.12 -51.93 -0.42 -0.29 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 35 H 0.08 0.57 8.04 -51.93 -0.42 0.16 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 39 H 0.09 1.04 7.67 -51.92 -0.40 0.64 16 40 H 0.40 6.45 8.33 -40.82 -0.34 6.11 16 41 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.04 0.93 8.09 -51.92 -0.42 0.51 16 43 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 48 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 418.93 15.07 6.31 6.31 Total: -1.00 -32.46 418.93 -10.11 -42.57 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.76 Total: 5.86 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.50 Total: -12.07 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.37 Total: -36.11 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.52 Total: -21.65 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.46 -10.11 -42.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431100980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.761 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds