Wall clock time and date at job start Wed Apr 1 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20753 * 120.00116 * 2 1 4 4 C 1.50704 * 120.00096 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47273 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.47099 * 180.02562 * 5 4 2 7 7 C 1.38261 * 119.94786 * 89.99786 * 6 5 4 8 8 C 1.38149 * 120.05760 * 180.02562 * 7 6 5 9 9 C 1.38728 * 119.94322 * 359.97438 * 8 7 6 10 10 O 1.35898 * 120.05692 * 180.02562 * 9 8 7 11 11 C 1.42895 * 117.00373 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47405 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00330 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00258 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47269 * 184.79147 * 15 14 12 17 17 C 1.50694 * 115.55114 * 294.81128 * 16 15 14 18 18 H 1.08008 * 119.99906 * 95.20873 * 17 16 15 19 19 C 1.37875 * 120.00314 * 274.92789 * 17 16 15 20 20 N 1.31509 * 119.99913 * 355.42420 * 19 17 16 21 21 Si 1.86807 * 120.00040 * 175.41703 * 19 17 16 22 22 H 1.48494 * 109.47052 * 60.00642 * 21 19 17 23 23 H 1.48500 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47106 * 300.00083 * 21 19 17 25 25 C 1.53003 * 117.49834 * 80.48431 * 16 15 14 26 26 C 1.53006 * 117.49908 * 149.14426 * 16 15 14 27 27 C 1.38733 * 119.88800 * 0.28034 * 9 8 7 28 28 C 1.38147 * 119.94485 * 359.46645 * 27 9 8 29 29 H 1.09003 * 109.46734 * 269.99743 * 1 2 3 30 30 H 1.08997 * 109.47270 * 29.99707 * 1 2 3 31 31 H 1.09000 * 109.47367 * 149.99873 * 1 2 3 32 32 H 1.08999 * 109.46959 * 59.99622 * 4 2 1 33 33 H 1.08998 * 109.46769 * 300.00094 * 4 2 1 34 34 H 1.08999 * 109.47379 * 59.99950 * 5 4 2 35 35 H 1.09004 * 109.46909 * 299.99816 * 5 4 2 36 36 H 1.08003 * 119.97398 * 0.02562 * 7 6 5 37 37 H 1.08001 * 120.02503 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.47210 * 59.99485 * 11 10 9 39 39 H 1.09009 * 109.47039 * 300.00261 * 11 10 9 40 40 H 0.96999 * 119.99637 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47395 * 64.78624 * 15 14 12 42 42 H 1.09007 * 109.47080 * 304.78945 * 15 14 12 43 43 H 0.97001 * 119.99960 * 184.99387 * 20 19 17 44 44 H 1.09003 * 117.50034 * 214.99852 * 25 16 15 45 45 H 1.09002 * 117.49971 * 0.02686 * 25 16 15 46 46 H 1.08996 * 117.49810 * 359.97342 * 26 16 15 47 47 H 1.08995 * 117.50078 * 144.97442 * 26 16 15 48 48 H 1.08002 * 120.02632 * 179.71565 * 27 9 8 49 49 H 1.07999 * 119.97386 * 180.23047 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5182 -2.3307 -0.0023 7 6 4.8627 -2.9277 -1.2009 8 6 5.5529 -4.1243 -1.2046 9 6 5.9009 -4.7268 -0.0044 10 8 6.5804 -5.9037 -0.0054 11 6 6.9049 -6.4666 1.2672 12 6 7.6524 -7.7600 1.0687 13 8 7.8840 -8.1606 -0.0523 14 7 8.0627 -8.4721 2.1369 15 6 8.7898 -9.7291 1.9439 16 6 9.0319 -10.3919 3.3014 17 6 9.9376 -9.6378 4.2406 18 1 9.5155 -8.9799 4.9859 19 6 11.3048 -9.7922 4.1522 20 7 11.8151 -10.6640 3.3102 21 14 12.4325 -8.7627 5.2284 22 1 12.1329 -9.0308 6.6579 23 1 13.8465 -9.1159 4.9439 24 1 12.2145 -7.3227 4.9386 25 6 7.8762 -11.1830 3.9175 26 6 9.0877 -11.9204 3.3414 27 6 5.5494 -4.1284 1.1969 28 6 4.8638 -2.9291 1.1953 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9972 -1.8763 -0.8908 33 1 1.9972 -1.8770 0.8891 34 1 4.0284 -0.4542 0.8889 35 1 4.0277 -0.4538 -0.8911 36 1 4.5919 -2.4581 -2.1350 37 1 5.8214 -4.5904 -2.1412 38 1 5.9877 -6.6584 1.8243 39 1 7.5293 -5.7684 1.8248 40 1 7.8771 -8.1519 3.0335 41 1 9.7466 -9.5253 1.4632 42 1 8.2015 -10.3962 1.3137 43 1 12.7716 -10.8249 3.2989 44 1 7.7710 -11.1580 5.0021 45 1 6.9435 -11.2316 3.3554 46 1 8.9514 -12.4538 2.4007 47 1 9.7797 -12.3805 4.0467 48 1 5.8152 -4.5978 2.1326 49 1 4.5932 -2.4611 2.1302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431100980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:38 Heat of formation + Delta-G solvation = -93.031432 kcal Electronic energy + Delta-G solvation = -28284.441937 eV Core-core repulsion = 24176.579739 eV Total energy + Delta-G solvation = -4107.862198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.44153 -40.62263 -40.25122 -38.75641 -38.24149 -35.05603 -34.52858 -33.95464 -32.07191 -31.60558 -30.45847 -29.15138 -27.80368 -26.70909 -25.01024 -23.78087 -22.94151 -21.98775 -21.46940 -21.07080 -20.41672 -19.31889 -18.59419 -17.73901 -17.39710 -17.14318 -16.94673 -16.65768 -16.55338 -16.13844 -16.00376 -15.81664 -15.72237 -15.33151 -15.11429 -14.81436 -14.50066 -14.40277 -13.97462 -13.90605 -13.60758 -13.57082 -13.44966 -13.11940 -12.95098 -12.92549 -12.82731 -12.78140 -12.39565 -12.32381 -12.07370 -12.01235 -11.86303 -11.68666 -11.42800 -10.97609 -10.93587 -10.58041 -10.44031 -10.08268 -9.93940 -9.90310 -9.03405 -8.08845 -6.23378 0.40563 0.43708 1.07749 1.44234 1.46113 1.51921 1.55107 1.63619 2.42546 2.75341 2.76717 3.19263 3.22342 3.47193 3.69362 3.91268 3.93270 3.99527 4.09243 4.12064 4.12533 4.22224 4.24482 4.38650 4.46076 4.52745 4.54503 4.64652 4.66123 4.70948 4.72185 4.77692 4.86983 4.98431 4.98886 5.02892 5.14477 5.22554 5.25424 5.29329 5.34757 5.41618 5.51383 5.56069 5.69375 5.70281 5.78480 5.84455 6.36010 6.38656 6.63972 6.67480 6.85001 7.26630 7.46879 8.97829 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.001661 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.356805 B =16855.103243 C =17304.633713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.356 3.644 3 O -0.509 6.509 4 C -0.165 4.165 5 C -0.064 4.064 6 C -0.122 4.122 7 C -0.076 4.076 8 C -0.165 4.165 9 C 0.104 3.896 10 O -0.322 6.322 11 C 0.051 3.949 12 C 0.503 3.497 13 O -0.586 6.586 14 N -0.690 5.690 15 C 0.180 3.820 16 C 0.000 4.000 17 C -0.503 4.503 18 H 0.068 0.932 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.949 3.051 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.271 1.271 25 C -0.174 4.174 26 C -0.156 4.156 27 C -0.209 4.209 28 C -0.076 4.076 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.416 0.584 41 H 0.027 0.973 42 H 0.039 0.961 43 H 0.258 0.742 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.148 0.852 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.156 18.428 -2.889 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.236 3.764 3 O -0.387 6.387 4 C -0.202 4.202 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.094 4.094 8 C -0.184 4.184 9 C 0.059 3.941 10 O -0.235 6.235 11 C -0.027 4.027 12 C 0.289 3.711 13 O -0.467 6.467 14 N -0.342 5.342 15 C 0.056 3.944 16 C -0.001 4.001 17 C -0.541 4.541 18 H 0.087 0.913 19 C -0.178 4.178 20 N -0.546 5.546 21 Si 0.776 3.224 22 H -0.194 1.194 23 H -0.221 1.221 24 H -0.196 1.196 25 C -0.211 4.211 26 C -0.194 4.194 27 C -0.227 4.227 28 C -0.094 4.094 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.166 0.834 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.425 18.528 -3.944 29.355 hybrid contribution 1.339 -0.033 0.796 1.558 sum -21.086 18.496 -3.148 28.225 Atomic orbital electron populations 1.22335 0.92235 1.05686 1.05817 1.25200 0.93340 0.89898 0.67988 1.90423 1.73084 1.36862 1.38287 1.22220 0.94166 0.97085 1.06754 1.20271 0.93609 0.92832 1.03389 1.19905 1.01555 0.97783 0.92974 1.21042 0.96054 0.93306 0.98977 1.20621 1.03777 0.97710 0.96282 1.19378 0.93553 0.85498 0.95633 1.86115 1.71144 1.35376 1.30866 1.22544 1.02000 0.92704 0.85475 1.20740 0.79685 0.86075 0.84597 1.90686 1.58478 1.71746 1.25743 1.45671 1.55958 1.23346 1.09189 1.20595 0.93072 0.83814 0.96886 1.19092 0.97144 0.91029 0.92837 1.20650 0.90290 1.26525 1.16640 0.91349 1.25724 0.99796 0.96031 0.96230 1.70108 1.12529 1.34663 1.37259 0.85751 0.77613 0.79588 0.79483 1.19357 1.22107 1.19567 1.23011 0.92005 1.06177 0.99889 1.22394 1.00136 0.96311 1.00544 1.21517 1.05140 0.99093 0.96990 1.21118 0.95832 0.93729 0.98741 0.87270 0.90332 0.87314 0.86510 0.86340 0.91125 0.91312 0.83534 0.85661 0.85528 0.86577 0.74747 0.95502 0.94222 0.93283 0.89447 0.89247 0.91390 0.91700 0.83446 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.83 10.25 71.24 0.73 -0.10 16 2 C 0.36 3.71 7.27 29.10 0.21 3.92 16 3 O -0.51 -10.07 16.72 -1.43 -0.02 -10.09 16 4 C -0.17 -1.20 5.61 29.85 0.17 -1.03 16 5 C -0.06 -0.78 4.63 29.85 0.14 -0.64 16 6 C -0.12 -1.81 5.13 -19.85 -0.10 -1.91 16 7 C -0.08 -1.26 9.69 22.25 0.22 -1.04 16 8 C -0.17 -3.64 9.99 22.37 0.22 -3.41 16 9 C 0.10 2.51 6.69 22.51 0.15 2.66 16 10 O -0.32 -9.65 9.67 -73.36 -0.71 -10.36 16 11 C 0.05 1.26 5.22 71.24 0.37 1.63 16 12 C 0.50 18.00 7.91 87.66 0.69 18.70 16 13 O -0.59 -27.13 16.50 16.01 0.26 -26.86 16 14 N -0.69 -24.63 5.48 -463.07 -2.54 -27.16 16 15 C 0.18 7.99 5.50 86.38 0.48 8.47 16 16 C 0.00 -0.01 1.47 -52.93 -0.08 -0.09 16 17 C -0.50 -24.63 8.59 25.60 0.22 -24.41 16 18 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 19 C 0.02 1.19 5.43 84.65 0.46 1.65 16 20 N -0.91 -50.59 12.65 21.45 0.27 -50.32 16 21 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 C -0.17 -6.60 9.96 30.62 0.30 -6.29 16 26 C -0.16 -6.96 9.14 30.62 0.28 -6.68 16 27 C -0.21 -3.80 9.04 22.37 0.20 -3.60 16 28 C -0.08 -1.14 9.69 22.26 0.22 -0.92 16 29 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 -0.04 8.12 -2.39 -0.02 -0.06 16 32 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 35 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.13 2.19 7.65 -2.38 -0.02 2.17 16 39 H 0.12 2.31 7.67 -2.38 -0.02 2.29 16 40 H 0.42 12.45 8.33 -92.71 -0.77 11.68 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.75 8.09 -2.38 -0.02 1.73 16 43 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 45 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 48 H 0.15 2.05 6.30 -2.91 -0.02 2.03 16 49 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -73.45 418.93 4.35 -69.10 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.18 Total: 25.60 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.88 Total: -13.11 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.27 Total: -77.48 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.47 Total: -47.32 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -73.45 4.35 -69.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431100980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.927 kcal (2) G-P(sol) polarization free energy of solvation -73.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds