Wall clock time and date at job start Wed Apr 1 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00071 * 2 1 4 4 H 1.09006 * 109.52163 * 29.91879 * 3 2 1 5 5 C 1.53198 * 109.49737 * 269.84004 * 3 2 1 6 6 N 1.46926 * 108.77222 * 185.41289 * 5 3 2 7 7 C 1.34775 * 120.62897 * 233.60418 * 6 5 3 8 8 O 1.21722 * 120.00085 * 354.51768 * 7 6 5 9 9 C 1.46256 * 119.99931 * 174.51316 * 7 6 5 10 10 C 1.35023 * 119.99861 * 172.77783 * 9 7 6 11 11 C 1.46964 * 120.00080 * 348.98492 * 10 9 7 12 12 C 1.40022 * 120.10341 * 311.80725 * 11 10 9 13 13 C 1.37593 * 119.89526 * 179.73644 * 12 11 10 14 14 C 1.39171 * 120.10549 * 0.51536 * 13 12 11 15 15 O 1.35567 * 119.90036 * 179.74054 * 14 13 12 16 16 C 1.34788 * 116.99809 * 186.67582 * 15 14 13 17 17 H 1.07997 * 120.00295 * 5.84639 * 16 15 14 18 18 C 1.38725 * 119.99768 * 185.85466 * 16 15 14 19 19 N 1.31506 * 119.99795 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99937 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47167 * 89.99915 * 20 18 16 22 22 H 1.48504 * 109.46660 * 210.00042 * 20 18 16 23 23 H 1.48504 * 109.47248 * 329.99775 * 20 18 16 24 24 C 1.39174 * 120.20018 * 359.76103 * 14 13 12 25 25 C 1.37602 * 120.10243 * 359.97438 * 24 14 13 26 26 C 1.46925 * 118.74063 * 53.61052 * 6 5 3 27 27 C 1.53203 * 108.77428 * 306.38990 * 26 6 5 28 28 C 1.53032 * 109.31280 * 54.63193 * 27 26 6 29 29 H 1.09001 * 109.46051 * 58.65851 * 28 27 26 30 30 C 1.53004 * 109.46030 * 178.62964 * 28 27 26 31 31 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46783 * 300.00018 * 1 2 3 33 33 H 1.09002 * 109.47042 * 59.99788 * 1 2 3 34 34 H 1.09005 * 109.58032 * 305.19756 * 5 3 2 35 35 H 1.08998 * 109.58741 * 65.62657 * 5 3 2 36 36 H 1.08000 * 119.99838 * 352.78923 * 9 7 6 37 37 H 1.07998 * 119.99879 * 168.98419 * 10 9 7 38 38 H 1.07999 * 120.04779 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.94752 * 180.27704 * 13 12 11 40 40 H 0.96997 * 119.99866 * 180.02562 * 19 18 16 41 41 H 1.08003 * 119.95251 * 180.02562 * 24 14 13 42 42 H 1.08004 * 120.04987 * 179.97438 * 25 24 14 43 43 H 1.08993 * 109.58718 * 186.60553 * 26 6 5 44 44 H 1.08998 * 109.59063 * 66.17235 * 26 6 5 45 45 H 1.09006 * 109.49395 * 294.68029 * 27 26 6 46 46 H 1.08996 * 109.49375 * 174.59207 * 27 26 6 47 47 H 1.08999 * 109.46892 * 60.00464 * 30 28 27 48 48 H 1.08998 * 109.47111 * 180.02562 * 30 28 27 49 49 H 1.09005 * 109.46676 * 300.00346 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0004 0.5124 5 6 2.2219 1.7709 -1.4441 6 7 2.9370 3.0544 -1.4272 7 6 2.4424 4.1245 -2.0803 8 8 1.4483 4.0088 -2.7731 9 6 3.1002 5.4250 -1.9566 10 6 2.6957 6.4616 -2.7213 11 6 1.7702 6.2326 -3.8397 12 6 2.0150 5.2004 -4.7537 13 6 1.1428 4.9863 -5.7961 14 6 0.0245 5.8005 -5.9491 15 8 -0.8293 5.5891 -6.9807 16 6 -1.8139 6.4930 -7.1551 17 1 -1.8403 7.3865 -6.5490 18 6 -2.7934 6.2754 -8.1130 19 7 -3.7543 7.1570 -8.2828 20 14 -2.7474 4.7302 -9.1616 21 1 -3.5163 3.6524 -8.4890 22 1 -3.3506 5.0144 -10.4886 23 1 -1.3388 4.2954 -9.3410 24 6 -0.2198 6.8312 -5.0464 25 6 0.6440 7.0494 -3.9977 26 6 4.2014 3.1489 -0.6850 27 6 3.9675 2.6679 0.7507 28 6 3.3594 1.2640 0.7213 29 1 4.0323 0.5876 0.1942 30 6 3.1560 0.7665 2.1539 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.8126 1.0306 -1.9837 35 1 1.2558 1.8973 -1.9326 36 1 3.9097 5.5559 -1.2537 37 1 3.0521 7.4592 -2.5110 38 1 2.8850 4.5710 -4.6384 39 1 1.3284 4.1876 -6.4990 40 1 -4.4395 7.0046 -8.9523 41 1 -1.0891 7.4604 -5.1687 42 1 0.4538 7.8498 -3.2980 43 1 4.5413 4.1844 -0.6725 44 1 4.9535 2.5210 -1.1627 45 1 3.2839 3.3501 1.2560 46 1 4.9173 2.6421 1.2849 47 1 2.4834 1.4429 2.6813 48 1 2.7233 -0.2337 2.1332 49 1 4.1169 0.7358 2.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491963038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:54 Heat of formation + Delta-G solvation = -51.915507 kcal Electronic energy + Delta-G solvation = -30237.607621 eV Core-core repulsion = 26131.528343 eV Total energy + Delta-G solvation = -4106.079278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.49897 -39.21698 -38.56429 -36.95032 -36.30618 -33.86361 -33.21163 -32.29975 -30.75045 -30.20111 -28.89975 -27.93661 -26.83814 -25.36908 -24.04612 -23.36326 -22.41101 -21.91702 -20.99177 -20.17130 -18.55347 -17.80972 -17.55435 -17.06634 -16.64198 -16.13451 -15.77478 -15.42716 -14.92149 -14.79959 -14.44904 -14.17720 -13.99563 -13.89996 -13.71231 -13.61499 -13.50950 -13.35757 -13.17308 -12.82577 -12.60324 -12.47168 -12.26029 -12.14971 -12.08414 -11.95609 -11.57144 -11.43334 -11.30200 -11.03366 -10.91724 -10.75527 -10.73530 -10.58552 -10.13301 -9.98952 -9.54080 -9.46512 -9.22965 -8.77400 -8.65313 -8.05074 -7.01142 -6.41796 -4.05655 1.18681 2.31673 2.55265 2.86234 3.23409 3.27664 3.42372 3.46773 3.56020 4.25031 4.33691 4.42630 4.47857 4.60447 4.70525 4.80955 4.85940 4.90929 4.99929 5.07578 5.10191 5.12097 5.17126 5.20272 5.30209 5.41200 5.43143 5.48220 5.50369 5.57568 5.60467 5.61996 5.66844 5.75600 5.81812 5.90397 5.97260 6.16964 6.20358 6.31338 6.42249 6.49871 6.66034 6.91429 6.92692 7.17446 7.29840 7.37609 7.45379 7.66829 7.83965 8.06565 8.40871 8.93684 9.58472 10.65693 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002539 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.330579 B =11024.452700 C =12340.683010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.082 3.918 4 H 0.064 0.936 5 C 0.094 3.906 6 N -0.615 5.615 7 C 0.543 3.457 8 O -0.510 6.510 9 C -0.261 4.261 10 C 0.025 3.975 11 C -0.173 4.173 12 C -0.003 4.003 13 C -0.197 4.197 14 C 0.174 3.826 15 O -0.214 6.214 16 C -0.387 4.387 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.877 5.877 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.233 4.233 25 C -0.046 4.046 26 C 0.105 3.895 27 C -0.130 4.130 28 C -0.088 4.088 29 H 0.079 0.921 30 C -0.143 4.143 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.280 0.720 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.014 -9.409 20.394 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C 0.023 3.977 4 H 0.082 0.918 5 C -0.030 4.030 6 N -0.352 5.352 7 C 0.335 3.665 8 O -0.386 6.386 9 C -0.282 4.282 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.021 4.021 13 C -0.217 4.217 14 C 0.121 3.879 15 O -0.118 6.118 16 C -0.463 4.463 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.515 5.515 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.252 4.252 25 C -0.065 4.065 26 C -0.018 4.018 27 C -0.168 4.168 28 C -0.107 4.107 29 H 0.098 0.902 30 C -0.200 4.200 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.327 -9.766 19.695 27.383 hybrid contribution -0.374 -0.334 -0.224 0.549 sum 15.954 -10.100 19.471 27.123 Atomic orbital electron populations 1.22838 0.80718 1.02819 1.00419 1.87874 1.19899 1.27034 1.94951 1.22495 0.94977 0.84815 0.95433 0.91837 1.21936 0.99304 0.85018 0.96719 1.47980 1.23582 1.10605 1.53012 1.18516 0.84723 0.84144 0.79155 1.90990 1.25870 1.84322 1.37387 1.22753 1.05306 0.93833 1.06300 1.22392 0.90074 0.97175 0.89827 1.18349 0.99167 1.01440 0.98434 1.20426 0.96755 0.92953 0.91991 1.19999 0.95900 1.03345 1.02428 1.19271 0.89392 0.92797 0.86445 1.83528 1.37568 1.48337 1.42363 1.20813 1.03069 1.00713 1.21656 0.87553 1.24494 0.93839 0.98619 0.97081 1.69625 1.12700 1.35167 1.34011 0.86183 0.79644 0.82101 0.79021 1.19870 1.20739 1.18280 1.21082 1.03218 1.02872 0.97999 1.20768 0.93224 0.96637 0.95847 1.21807 0.85897 1.02755 0.91332 1.22025 1.01743 0.96096 0.96935 1.21194 0.95540 0.97085 0.96859 0.90222 1.21754 1.01469 1.01776 0.95049 0.89505 0.94050 0.93529 0.91100 0.88789 0.85678 0.85797 0.87952 0.86824 0.91019 0.85030 0.87347 0.88998 0.91389 0.91210 0.90050 0.93030 0.91785 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -3.97 9.62 -35.23 -0.34 -4.31 16 3 C 0.08 0.80 2.21 -26.61 -0.06 0.74 16 4 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 5 C 0.09 1.09 6.04 -3.71 -0.02 1.06 16 6 N -0.62 -6.96 2.97 -174.46 -0.52 -7.48 16 7 C 0.54 7.83 6.81 -13.04 -0.09 7.74 16 8 O -0.51 -9.69 11.93 5.17 0.06 -9.62 16 9 C -0.26 -3.12 9.22 -37.50 -0.35 -3.46 16 10 C 0.02 0.33 9.77 -37.19 -0.36 -0.03 16 11 C -0.17 -3.08 4.34 -105.03 -0.46 -3.53 16 12 C 0.00 -0.05 6.78 -39.15 -0.27 -0.32 16 13 C -0.20 -4.29 9.97 -39.47 -0.39 -4.68 16 14 C 0.17 4.25 6.65 -38.89 -0.26 3.99 16 15 O -0.21 -5.86 8.57 0.73 0.01 -5.85 16 16 C -0.39 -11.16 9.88 30.91 0.31 -10.86 16 17 H 0.11 3.12 5.54 -52.49 -0.29 2.83 16 18 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 19 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 20 Si 0.91 22.16 28.62 -169.99 -4.86 17.29 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.23 -5.28 9.10 -39.47 -0.36 -5.64 16 25 C -0.05 -0.89 9.78 -39.15 -0.38 -1.27 16 26 C 0.11 0.78 6.35 -3.71 -0.02 0.76 16 27 C -0.13 -0.82 5.36 -26.61 -0.14 -0.96 16 28 C -0.09 -0.67 2.43 -90.58 -0.22 -0.89 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 C -0.14 -0.98 9.03 37.16 0.34 -0.65 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.05 0.45 8.03 -51.93 -0.42 0.03 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.33 6.93 -51.93 -0.36 0.97 16 36 H 0.13 1.03 5.92 -52.49 -0.31 0.72 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.10 1.77 7.46 -52.49 -0.39 1.37 16 39 H 0.11 2.34 8.06 -52.48 -0.42 1.92 16 40 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.13 3.11 5.72 -52.48 -0.30 2.81 16 42 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 43 H 0.09 0.56 5.32 -51.93 -0.28 0.28 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.49 7.65 -51.93 -0.40 0.10 16 49 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -32.98 393.11 -8.05 -41.03 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.35 Total: 2.83 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.74 Total: -14.94 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.26 Total: -32.35 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.27 Total: -19.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.98 -8.05 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491963038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.883 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds