Wall clock time and date at job start Wed Apr 1 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00071 * 2 1 4 4 H 1.09006 * 109.52163 * 29.91879 * 3 2 1 5 5 C 1.53198 * 109.49737 * 269.84004 * 3 2 1 6 6 N 1.46926 * 108.77222 * 185.41289 * 5 3 2 7 7 C 1.34775 * 120.62897 * 233.60418 * 6 5 3 8 8 O 1.21722 * 120.00085 * 354.51768 * 7 6 5 9 9 C 1.46256 * 119.99931 * 174.51316 * 7 6 5 10 10 C 1.35023 * 119.99861 * 172.77783 * 9 7 6 11 11 C 1.46964 * 120.00080 * 348.98492 * 10 9 7 12 12 C 1.40022 * 120.10341 * 311.80725 * 11 10 9 13 13 C 1.37593 * 119.89526 * 179.73644 * 12 11 10 14 14 C 1.39171 * 120.10549 * 0.51536 * 13 12 11 15 15 O 1.35567 * 119.90036 * 179.74054 * 14 13 12 16 16 C 1.34788 * 116.99809 * 186.67582 * 15 14 13 17 17 H 1.07997 * 120.00295 * 5.84639 * 16 15 14 18 18 C 1.38725 * 119.99768 * 185.85466 * 16 15 14 19 19 N 1.31506 * 119.99795 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99937 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47167 * 89.99915 * 20 18 16 22 22 H 1.48504 * 109.46660 * 210.00042 * 20 18 16 23 23 H 1.48504 * 109.47248 * 329.99775 * 20 18 16 24 24 C 1.39174 * 120.20018 * 359.76103 * 14 13 12 25 25 C 1.37602 * 120.10243 * 359.97438 * 24 14 13 26 26 C 1.46925 * 118.74063 * 53.61052 * 6 5 3 27 27 C 1.53203 * 108.77428 * 306.38990 * 26 6 5 28 28 C 1.53032 * 109.31280 * 54.63193 * 27 26 6 29 29 H 1.09001 * 109.46051 * 58.65851 * 28 27 26 30 30 C 1.53004 * 109.46030 * 178.62964 * 28 27 26 31 31 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46783 * 300.00018 * 1 2 3 33 33 H 1.09002 * 109.47042 * 59.99788 * 1 2 3 34 34 H 1.09005 * 109.58032 * 305.19756 * 5 3 2 35 35 H 1.08998 * 109.58741 * 65.62657 * 5 3 2 36 36 H 1.08000 * 119.99838 * 352.78923 * 9 7 6 37 37 H 1.07998 * 119.99879 * 168.98419 * 10 9 7 38 38 H 1.07999 * 120.04779 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.94752 * 180.27704 * 13 12 11 40 40 H 0.96997 * 119.99866 * 180.02562 * 19 18 16 41 41 H 1.08003 * 119.95251 * 180.02562 * 24 14 13 42 42 H 1.08004 * 120.04987 * 179.97438 * 25 24 14 43 43 H 1.08993 * 109.58718 * 186.60553 * 26 6 5 44 44 H 1.08998 * 109.59063 * 66.17235 * 26 6 5 45 45 H 1.09006 * 109.49395 * 294.68029 * 27 26 6 46 46 H 1.08996 * 109.49375 * 174.59207 * 27 26 6 47 47 H 1.08999 * 109.46892 * 60.00464 * 30 28 27 48 48 H 1.08998 * 109.47111 * 180.02562 * 30 28 27 49 49 H 1.09005 * 109.46676 * 300.00346 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0004 0.5124 5 6 2.2219 1.7709 -1.4441 6 7 2.9370 3.0544 -1.4272 7 6 2.4424 4.1245 -2.0803 8 8 1.4483 4.0088 -2.7731 9 6 3.1002 5.4250 -1.9566 10 6 2.6957 6.4616 -2.7213 11 6 1.7702 6.2326 -3.8397 12 6 2.0150 5.2004 -4.7537 13 6 1.1428 4.9863 -5.7961 14 6 0.0245 5.8005 -5.9491 15 8 -0.8293 5.5891 -6.9807 16 6 -1.8139 6.4930 -7.1551 17 1 -1.8403 7.3865 -6.5490 18 6 -2.7934 6.2754 -8.1130 19 7 -3.7543 7.1570 -8.2828 20 14 -2.7474 4.7302 -9.1616 21 1 -3.5163 3.6524 -8.4890 22 1 -3.3506 5.0144 -10.4886 23 1 -1.3388 4.2954 -9.3410 24 6 -0.2198 6.8312 -5.0464 25 6 0.6440 7.0494 -3.9977 26 6 4.2014 3.1489 -0.6850 27 6 3.9675 2.6679 0.7507 28 6 3.3594 1.2640 0.7213 29 1 4.0323 0.5876 0.1942 30 6 3.1560 0.7665 2.1539 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.8126 1.0306 -1.9837 35 1 1.2558 1.8973 -1.9326 36 1 3.9097 5.5559 -1.2537 37 1 3.0521 7.4592 -2.5110 38 1 2.8850 4.5710 -4.6384 39 1 1.3284 4.1876 -6.4990 40 1 -4.4395 7.0046 -8.9523 41 1 -1.0891 7.4604 -5.1687 42 1 0.4538 7.8498 -3.2980 43 1 4.5413 4.1844 -0.6725 44 1 4.9535 2.5210 -1.1627 45 1 3.2839 3.3501 1.2560 46 1 4.9173 2.6421 1.2849 47 1 2.4834 1.4429 2.6813 48 1 2.7233 -0.2337 2.1332 49 1 4.1169 0.7358 2.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491963038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:53 Heat of formation + Delta-G solvation = -72.345424 kcal Electronic energy + Delta-G solvation = -30238.493528 eV Core-core repulsion = 26131.528343 eV Total energy + Delta-G solvation = -4106.965186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.49141 -40.80299 -39.70982 -38.33264 -37.39485 -34.70730 -34.68508 -34.15049 -31.89140 -31.54176 -30.04828 -29.00442 -27.70481 -27.24666 -25.05953 -24.08160 -23.66507 -23.45177 -22.18095 -21.12497 -19.92769 -19.46780 -19.02299 -18.46773 -17.47113 -17.11813 -16.64183 -16.57288 -16.35546 -16.05803 -15.88427 -15.69262 -15.34380 -15.19771 -14.86995 -14.74043 -14.52445 -14.32171 -14.22991 -14.16183 -14.04744 -13.86336 -13.71450 -13.33541 -13.06103 -12.80162 -12.68695 -12.58197 -12.50938 -12.29769 -12.22374 -11.97069 -11.93977 -11.57061 -11.43594 -11.38276 -11.00241 -10.83483 -10.60491 -10.45410 -9.79559 -9.47228 -8.66591 -8.53691 -6.24272 -0.01438 0.65234 1.01892 1.26698 1.32486 1.48070 1.97505 2.25028 2.40423 2.77003 2.79366 3.08294 3.15093 3.60379 3.71222 3.82528 3.92603 3.96787 4.07771 4.08881 4.11206 4.14330 4.36407 4.40744 4.42415 4.51309 4.51717 4.56377 4.67412 4.73343 4.75628 4.78978 4.80526 4.88689 4.91297 4.97525 5.07018 5.12759 5.18645 5.20982 5.34561 5.37957 5.41612 5.43256 5.53535 5.65337 5.75339 5.79206 5.88599 6.13762 6.24488 6.50127 6.80714 7.32646 7.56968 8.58063 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002539 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.330579 B =11024.452700 C =12340.683010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.086 3.914 4 H 0.055 0.945 5 C 0.094 3.906 6 N -0.607 5.607 7 C 0.527 3.473 8 O -0.569 6.569 9 C -0.225 4.225 10 C 0.003 3.997 11 C -0.141 4.141 12 C -0.003 4.003 13 C -0.204 4.204 14 C 0.129 3.871 15 O -0.245 6.245 16 C -0.399 4.399 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.247 4.247 25 C -0.056 4.056 26 C 0.096 3.904 27 C -0.123 4.123 28 C -0.086 4.086 29 H 0.080 0.920 30 C -0.139 4.139 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.179 0.821 37 H 0.172 0.828 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.286 0.714 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.354 -10.073 23.849 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.309 6.309 3 C 0.027 3.973 4 H 0.073 0.927 5 C -0.030 4.030 6 N -0.341 5.341 7 C 0.320 3.680 8 O -0.449 6.449 9 C -0.245 4.245 10 C -0.016 4.016 11 C -0.142 4.142 12 C -0.021 4.021 13 C -0.224 4.224 14 C 0.080 3.920 15 O -0.153 6.153 16 C -0.476 4.476 17 H 0.099 0.901 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.190 1.190 24 C -0.266 4.266 25 C -0.074 4.074 26 C -0.024 4.024 27 C -0.161 4.161 28 C -0.105 4.105 29 H 0.099 0.901 30 C -0.196 4.196 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.196 0.804 37 H 0.189 0.811 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.160 0.840 43 H 0.134 0.866 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.131 0.869 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.742 -10.445 23.219 32.840 hybrid contribution -1.382 -0.238 -0.865 1.648 sum 19.360 -10.684 22.354 31.443 Atomic orbital electron populations 1.22924 0.80201 1.03825 1.00072 1.87862 1.20580 1.27537 1.94885 1.22514 0.96296 0.84330 0.94168 0.92737 1.21876 0.97751 0.85496 0.97890 1.48091 1.24476 1.09528 1.52050 1.19174 0.84323 0.85739 0.78785 1.90990 1.28516 1.85377 1.40040 1.23173 1.04404 0.91266 1.05698 1.22629 0.89995 0.99931 0.89058 1.18922 0.98276 0.98504 0.98496 1.20724 0.96756 0.93502 0.91105 1.20240 0.95631 1.03055 1.03437 1.19737 0.90291 0.94749 0.87210 1.83467 1.38516 1.48644 1.44647 1.20738 1.04073 1.00810 1.21950 0.90087 1.25271 0.93472 1.01702 0.98271 1.69698 1.13825 1.37013 1.35512 0.85257 0.79183 0.78344 0.78143 1.19406 1.18544 1.18981 1.21123 1.03571 1.02521 0.99390 1.21136 0.92911 0.98049 0.95291 1.22200 0.83972 1.04742 0.91536 1.22022 1.03064 0.94633 0.96366 1.21236 0.93891 0.98428 0.96941 0.90124 1.21714 1.02384 1.00938 0.94599 0.87914 0.93149 0.95102 0.90956 0.92340 0.80415 0.81129 0.85699 0.86598 0.90466 0.87328 0.83971 0.86570 0.89914 0.91421 0.86948 0.93110 0.93062 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.82 113.37 1.23 1.69 16 2 O -0.39 -7.93 9.62 -148.98 -1.43 -9.36 16 3 C 0.09 1.57 2.21 30.67 0.07 1.64 16 4 H 0.05 1.09 7.79 -2.38 -0.02 1.07 16 5 C 0.09 2.11 6.04 86.36 0.52 2.63 16 6 N -0.61 -11.91 2.97 -824.08 -2.45 -14.36 16 7 C 0.53 13.63 6.81 86.33 0.59 14.22 16 8 O -0.57 -21.24 11.93 -4.42 -0.05 -21.30 16 9 C -0.23 -4.07 9.22 23.62 0.22 -3.85 16 10 C 0.00 0.07 9.77 23.82 0.23 0.30 16 11 C -0.14 -4.71 4.34 -20.13 -0.09 -4.80 16 12 C 0.00 -0.10 6.78 22.55 0.15 0.05 16 13 C -0.20 -9.17 9.97 22.34 0.22 -8.95 16 14 C 0.13 6.73 6.65 22.72 0.15 6.88 16 15 O -0.25 -14.43 8.57 -20.31 -0.17 -14.61 16 16 C -0.40 -24.84 9.88 67.94 0.67 -24.17 16 17 H 0.08 5.25 5.54 -2.91 -0.02 5.23 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.92 -56.62 13.96 21.62 0.30 -56.32 16 20 Si 0.97 47.80 28.62 68.60 1.96 49.76 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 24 C -0.25 -11.87 9.10 22.34 0.20 -11.67 16 25 C -0.06 -2.11 9.78 22.55 0.22 -1.89 16 26 C 0.10 0.92 6.35 86.37 0.55 1.47 16 27 C -0.12 -0.94 5.36 30.67 0.16 -0.77 16 28 C -0.09 -1.04 2.43 -10.77 -0.03 -1.07 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 C -0.14 -1.49 9.03 71.98 0.65 -0.84 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.03 0.63 8.03 -2.39 -0.02 0.61 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.06 1.74 6.93 -2.39 -0.02 1.72 16 36 H 0.18 1.41 5.92 -2.91 -0.02 1.39 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.13 4.03 7.46 -2.91 -0.02 4.01 16 39 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 40 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 41 H 0.11 5.63 5.72 -2.91 -0.02 5.62 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.12 0.55 5.32 -2.39 -0.01 0.54 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.05 0.69 7.65 -2.39 -0.02 0.67 16 49 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -80.41 393.11 5.30 -75.11 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.95 Total: 19.04 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 6.19 Total: -27.97 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -2.15 Total: -70.68 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.66 Total: -45.27 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.96 Total: 49.76 kcal Total: -80.41 5.30 -75.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491963038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.769 kcal (2) G-P(sol) polarization free energy of solvation -80.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds