Wall clock time and date at job start Wed Apr 1 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47105 * 2 1 4 4 O 1.42892 * 109.47191 * 239.99743 * 2 1 3 5 5 C 1.53007 * 109.47030 * 119.99961 * 2 1 3 6 6 H 1.09003 * 109.52126 * 305.08541 * 5 2 1 7 7 C 1.53038 * 109.49697 * 185.00077 * 5 2 1 8 8 C 1.53042 * 109.53784 * 178.68312 * 7 5 2 9 9 C 1.53185 * 109.31155 * 61.36384 * 8 7 5 10 10 N 1.46925 * 108.77593 * 305.36598 * 9 8 7 11 11 C 1.34783 * 120.62641 * 233.60473 * 10 9 8 12 12 O 1.21722 * 119.99384 * 174.07963 * 11 10 9 13 13 C 1.46252 * 120.00310 * 354.08569 * 11 10 9 14 14 C 1.35024 * 119.99778 * 172.77477 * 13 11 10 15 15 C 1.46958 * 120.00143 * 349.11618 * 14 13 11 16 16 C 1.40025 * 120.09925 * 311.66237 * 15 14 13 17 17 C 1.37607 * 119.89623 * 179.71556 * 16 15 14 18 18 C 1.39183 * 120.09728 * 0.54299 * 17 16 15 19 19 O 1.35568 * 119.89609 * 179.74008 * 18 17 16 20 20 C 1.34782 * 117.00004 * 186.64724 * 19 18 17 21 21 H 1.08005 * 119.99711 * 5.85615 * 20 19 18 22 22 C 1.38715 * 120.00016 * 185.86289 * 20 19 18 23 23 N 1.31509 * 120.00324 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46999 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46931 * 119.99431 * 24 22 20 27 27 H 1.48497 * 109.46921 * 239.99720 * 24 22 20 28 28 C 1.39175 * 120.20311 * 359.75393 * 18 17 16 29 29 C 1.37597 * 120.10297 * 359.96146 * 28 18 17 30 30 C 1.46921 * 118.74101 * 53.61249 * 10 9 8 31 31 H 1.08998 * 109.47323 * 300.00197 * 1 2 3 32 32 H 1.09004 * 109.47298 * 60.00265 * 1 2 3 33 33 H 1.09008 * 109.47076 * 179.97438 * 1 2 3 34 34 H 0.96699 * 114.00427 * 299.99841 * 4 2 1 35 35 H 1.09000 * 109.46151 * 298.70663 * 7 5 2 36 36 H 1.09006 * 109.46063 * 58.67279 * 7 5 2 37 37 H 1.08993 * 109.49516 * 181.31924 * 8 7 5 38 38 H 1.09005 * 109.49480 * 301.38312 * 8 7 5 39 39 H 1.09004 * 109.58605 * 65.15327 * 9 8 7 40 40 H 1.08998 * 109.58498 * 185.43605 * 9 8 7 41 41 H 1.08000 * 120.00056 * 352.77345 * 13 11 10 42 42 H 1.07998 * 119.99740 * 169.12320 * 14 13 11 43 43 H 1.08002 * 120.05347 * 359.97438 * 16 15 14 44 44 H 1.07990 * 119.95234 * 180.27539 * 17 16 15 45 45 H 0.96998 * 120.00608 * 180.02562 * 23 22 20 46 46 H 1.07994 * 119.94880 * 179.97438 * 28 18 17 47 47 H 1.08001 * 120.05342 * 180.02562 * 29 28 18 48 48 H 1.09005 * 109.58732 * 186.60366 * 30 10 9 49 49 H 1.08995 * 109.58848 * 66.17280 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6047 -0.2633 2.1375 7 6 3.5652 -0.6136 1.3144 8 6 4.0736 -1.3065 2.5807 9 6 3.6952 -2.7901 2.5332 10 7 2.2451 -2.9018 2.3249 11 6 1.4857 -3.6359 3.1623 12 8 0.2742 -3.6343 3.0445 13 6 2.1173 -4.4342 4.2124 14 6 1.3560 -5.0524 5.1405 15 6 -0.0754 -4.7368 5.2457 16 6 -0.4995 -3.4028 5.2826 17 6 -1.8413 -3.1120 5.3752 18 6 -2.7755 -4.1414 5.4435 19 8 -4.0960 -3.8502 5.5399 20 6 -4.9374 -4.8838 5.7409 21 1 -4.5440 -5.8750 5.9121 22 6 -6.3086 -4.6745 5.7276 23 7 -6.7877 -3.4676 5.5194 24 14 -7.4748 -6.1072 6.0053 25 1 -6.6904 -7.3506 6.2140 26 1 -8.3093 -5.8408 7.2044 27 1 -8.3517 -6.2690 4.8179 28 6 -2.3581 -5.4688 5.4134 29 6 -1.0189 -5.7690 5.3150 30 6 1.6385 -2.1983 1.1866 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7211 -1.5952 -1.2328 35 1 4.0009 -1.0935 0.4380 36 1 3.8546 0.4371 1.3344 37 1 5.1577 -1.2092 2.6384 38 1 3.6196 -0.8426 3.4564 39 1 4.2209 -3.2751 1.7106 40 1 3.9692 -3.2674 3.4740 41 1 3.1926 -4.5293 4.2454 42 1 1.7991 -5.7788 5.8057 43 1 0.2251 -2.6034 5.2342 44 1 -2.1696 -2.0835 5.3992 45 1 -7.7465 -3.3212 5.5105 46 1 -3.0865 -6.2643 5.4670 47 1 -0.6959 -6.7994 5.2913 48 1 0.5532 -2.2846 1.2400 49 1 1.9965 -2.6350 0.2544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492217926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:52 Heat of formation + Delta-G solvation = -65.716073 kcal Electronic energy + Delta-G solvation = -30422.806195 eV Core-core repulsion = 26316.128480 eV Total energy + Delta-G solvation = -4106.677715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.45722 -39.08965 -38.43420 -36.81902 -36.11296 -33.29670 -32.93361 -32.13633 -31.92370 -30.12688 -29.56282 -28.10202 -25.96534 -25.29297 -24.49410 -22.86180 -21.80132 -21.71565 -20.92179 -19.95922 -18.46053 -17.88284 -17.51087 -16.80295 -16.71460 -16.22963 -15.39110 -14.95048 -14.73413 -14.62753 -14.54342 -14.39854 -14.21944 -14.04483 -13.61149 -13.57031 -13.36633 -13.03657 -12.97052 -12.83039 -12.56996 -12.32669 -12.22153 -12.13342 -11.68915 -11.65889 -11.42408 -11.28624 -11.16063 -11.11909 -11.00697 -10.67906 -10.63481 -10.56457 -10.39076 -10.08604 -9.49276 -9.40789 -9.15819 -8.71857 -8.60259 -7.96137 -6.88689 -6.45579 -4.01498 1.26179 2.40823 2.64192 3.02368 3.13541 3.14337 3.19880 3.56619 3.97242 4.08224 4.31669 4.46130 4.60991 4.67587 4.72720 4.77572 4.89701 5.02331 5.06558 5.09775 5.12689 5.18215 5.31874 5.34029 5.38040 5.53632 5.56134 5.56899 5.62048 5.67708 5.73292 5.74983 5.81850 5.84509 5.87551 6.04762 6.10567 6.24184 6.29721 6.39839 6.52507 6.61803 6.78464 7.02902 7.12474 7.34498 7.35522 7.42973 7.50121 7.52918 7.91795 8.00958 8.48431 9.00321 9.72687 10.72487 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002618 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.710499 B =10692.127463 C =12163.106884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.111 3.889 3 H 0.099 0.901 4 O -0.564 6.564 5 C -0.135 4.135 6 H 0.084 0.916 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.109 3.891 10 N -0.617 5.617 11 C 0.543 3.457 12 O -0.509 6.509 13 C -0.264 4.264 14 C 0.026 3.974 15 C -0.181 4.181 16 C 0.000 4.000 17 C -0.198 4.198 18 C 0.169 3.831 19 O -0.174 6.174 20 C -0.389 4.389 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.245 4.245 29 C -0.044 4.044 30 C 0.114 3.886 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.373 0.627 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.419 2.694 -6.994 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.052 3.948 3 H 0.117 0.883 4 O -0.370 6.370 5 C -0.154 4.154 6 H 0.102 0.898 7 C -0.147 4.147 8 C -0.175 4.175 9 C -0.015 4.015 10 N -0.352 5.352 11 C 0.334 3.666 12 O -0.385 6.385 13 C -0.285 4.285 14 C 0.006 3.994 15 C -0.182 4.182 16 C -0.019 4.019 17 C -0.218 4.218 18 C 0.114 3.886 19 O -0.077 6.077 20 C -0.465 4.465 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.264 4.264 29 C -0.063 4.063 30 C -0.009 4.009 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.222 0.778 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.124 0.876 48 H 0.115 0.885 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.636 3.588 -7.189 23.080 hybrid contribution -0.652 -1.217 0.180 1.392 sum 20.984 2.371 -7.009 22.250 Atomic orbital electron populations 1.22568 0.95979 1.03322 1.02972 1.21895 0.93103 0.96209 0.83634 0.88291 1.86554 1.77168 1.29259 1.44057 1.22235 0.96928 0.96616 0.99663 0.89795 1.21489 0.94502 1.00739 0.97953 1.21940 1.01016 0.95654 0.98845 1.21714 0.80883 0.96600 1.02266 1.47984 1.07755 1.50378 1.29105 1.18506 0.86839 0.79165 0.82056 1.90993 1.13083 1.63219 1.71201 1.22735 0.99376 1.07188 0.99166 1.22371 0.93113 0.91761 0.92127 1.18279 0.91515 0.93574 1.14843 1.20406 0.94013 0.94113 0.93320 1.19993 0.91617 0.97657 1.12493 1.19525 0.85316 0.92660 0.91090 1.83926 1.11437 1.35652 1.76649 1.21421 0.86563 0.88839 1.49696 0.88927 1.25322 0.96548 0.98102 0.96614 1.70029 1.13827 1.20468 1.45130 0.85642 0.79706 0.79771 0.78296 1.19039 1.20108 1.20127 1.20963 0.95932 0.96453 1.13094 1.20714 0.92428 0.96928 0.96204 1.21538 1.00450 0.90485 0.88405 0.91228 0.91772 0.91705 0.77843 0.91221 0.91832 0.90814 0.91451 0.91860 0.89418 0.85908 0.86038 0.88228 0.86893 0.92021 0.85658 0.87645 0.88462 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 9.30 37.16 0.35 -1.43 16 2 C 0.11 0.96 3.34 -26.73 -0.09 0.87 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 4 O -0.56 -5.15 12.80 -35.23 -0.45 -5.60 16 5 C -0.13 -1.20 2.17 -90.50 -0.20 -1.40 16 6 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.11 -0.83 5.05 -26.69 -0.13 -0.97 16 8 C -0.14 -0.97 6.08 -26.61 -0.16 -1.13 16 9 C 0.11 0.87 6.29 -3.71 -0.02 0.85 16 10 N -0.62 -7.04 2.97 -174.47 -0.52 -7.56 16 11 C 0.54 8.03 6.82 -13.04 -0.09 7.95 16 12 O -0.51 -9.84 11.91 5.17 0.06 -9.78 16 13 C -0.26 -3.31 9.12 -37.51 -0.34 -3.66 16 14 C 0.03 0.36 9.77 -37.19 -0.36 0.00 16 15 C -0.18 -3.33 4.33 -105.03 -0.46 -3.78 16 16 C 0.00 0.00 6.77 -39.14 -0.27 -0.26 16 17 C -0.20 -4.53 9.97 -39.46 -0.39 -4.93 16 18 C 0.17 4.29 6.65 -38.88 -0.26 4.03 16 19 O -0.17 -5.12 9.74 0.74 0.01 -5.12 16 20 C -0.39 -11.09 9.42 30.91 0.29 -10.80 16 21 H 0.09 2.45 5.31 -52.48 -0.28 2.17 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -25.53 13.67 55.48 0.76 -24.78 16 24 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 28 C -0.25 -5.61 9.10 -39.47 -0.36 -5.97 16 29 C -0.04 -0.86 9.78 -39.15 -0.38 -1.25 16 30 C 0.11 1.21 5.06 -3.71 -0.02 1.19 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.65 6.70 -51.92 -0.35 0.30 16 34 H 0.37 2.61 7.08 45.56 0.32 2.93 16 35 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.62 5.48 -51.93 -0.28 0.33 16 41 H 0.12 1.11 6.11 -52.49 -0.32 0.79 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.10 1.80 7.46 -52.49 -0.39 1.41 16 44 H 0.11 2.52 8.06 -52.49 -0.42 2.09 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.13 2.85 5.72 -52.49 -0.30 2.55 16 47 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 48 H 0.10 1.28 5.72 -51.93 -0.30 0.99 16 49 H 0.06 0.54 6.45 -51.93 -0.33 0.21 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -34.13 388.00 -8.74 -42.87 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.43 Total: 8.10 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.99 Total: -19.72 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.24 Total: -32.33 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.38 Total: -20.50 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.13 -8.74 -42.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492217926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.850 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds