Wall clock time and date at job start Wed Apr 1 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47105 * 2 1 4 4 O 1.42892 * 109.47191 * 239.99743 * 2 1 3 5 5 C 1.53007 * 109.47030 * 119.99961 * 2 1 3 6 6 H 1.09003 * 109.52126 * 305.08541 * 5 2 1 7 7 C 1.53038 * 109.49697 * 185.00077 * 5 2 1 8 8 C 1.53042 * 109.53784 * 178.68312 * 7 5 2 9 9 C 1.53185 * 109.31155 * 61.36384 * 8 7 5 10 10 N 1.46925 * 108.77593 * 305.36598 * 9 8 7 11 11 C 1.34783 * 120.62641 * 233.60473 * 10 9 8 12 12 O 1.21722 * 119.99384 * 174.07963 * 11 10 9 13 13 C 1.46252 * 120.00310 * 354.08569 * 11 10 9 14 14 C 1.35024 * 119.99778 * 172.77477 * 13 11 10 15 15 C 1.46958 * 120.00143 * 349.11618 * 14 13 11 16 16 C 1.40025 * 120.09925 * 311.66237 * 15 14 13 17 17 C 1.37607 * 119.89623 * 179.71556 * 16 15 14 18 18 C 1.39183 * 120.09728 * 0.54299 * 17 16 15 19 19 O 1.35568 * 119.89609 * 179.74008 * 18 17 16 20 20 C 1.34782 * 117.00004 * 186.64724 * 19 18 17 21 21 H 1.08005 * 119.99711 * 5.85615 * 20 19 18 22 22 C 1.38715 * 120.00016 * 185.86289 * 20 19 18 23 23 N 1.31509 * 120.00324 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46999 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46931 * 119.99431 * 24 22 20 27 27 H 1.48497 * 109.46921 * 239.99720 * 24 22 20 28 28 C 1.39175 * 120.20311 * 359.75393 * 18 17 16 29 29 C 1.37597 * 120.10297 * 359.96146 * 28 18 17 30 30 C 1.46921 * 118.74101 * 53.61249 * 10 9 8 31 31 H 1.08998 * 109.47323 * 300.00197 * 1 2 3 32 32 H 1.09004 * 109.47298 * 60.00265 * 1 2 3 33 33 H 1.09008 * 109.47076 * 179.97438 * 1 2 3 34 34 H 0.96699 * 114.00427 * 299.99841 * 4 2 1 35 35 H 1.09000 * 109.46151 * 298.70663 * 7 5 2 36 36 H 1.09006 * 109.46063 * 58.67279 * 7 5 2 37 37 H 1.08993 * 109.49516 * 181.31924 * 8 7 5 38 38 H 1.09005 * 109.49480 * 301.38312 * 8 7 5 39 39 H 1.09004 * 109.58605 * 65.15327 * 9 8 7 40 40 H 1.08998 * 109.58498 * 185.43605 * 9 8 7 41 41 H 1.08000 * 120.00056 * 352.77345 * 13 11 10 42 42 H 1.07998 * 119.99740 * 169.12320 * 14 13 11 43 43 H 1.08002 * 120.05347 * 359.97438 * 16 15 14 44 44 H 1.07990 * 119.95234 * 180.27539 * 17 16 15 45 45 H 0.96998 * 120.00608 * 180.02562 * 23 22 20 46 46 H 1.07994 * 119.94880 * 179.97438 * 28 18 17 47 47 H 1.08001 * 120.05342 * 180.02562 * 29 28 18 48 48 H 1.09005 * 109.58732 * 186.60366 * 30 10 9 49 49 H 1.08995 * 109.58848 * 66.17280 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6047 -0.2633 2.1375 7 6 3.5652 -0.6136 1.3144 8 6 4.0736 -1.3065 2.5807 9 6 3.6952 -2.7901 2.5332 10 7 2.2451 -2.9018 2.3249 11 6 1.4857 -3.6359 3.1623 12 8 0.2742 -3.6343 3.0445 13 6 2.1173 -4.4342 4.2124 14 6 1.3560 -5.0524 5.1405 15 6 -0.0754 -4.7368 5.2457 16 6 -0.4995 -3.4028 5.2826 17 6 -1.8413 -3.1120 5.3752 18 6 -2.7755 -4.1414 5.4435 19 8 -4.0960 -3.8502 5.5399 20 6 -4.9374 -4.8838 5.7409 21 1 -4.5440 -5.8750 5.9121 22 6 -6.3086 -4.6745 5.7276 23 7 -6.7877 -3.4676 5.5194 24 14 -7.4748 -6.1072 6.0053 25 1 -6.6904 -7.3506 6.2140 26 1 -8.3093 -5.8408 7.2044 27 1 -8.3517 -6.2690 4.8179 28 6 -2.3581 -5.4688 5.4134 29 6 -1.0189 -5.7690 5.3150 30 6 1.6385 -2.1983 1.1866 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7211 -1.5952 -1.2328 35 1 4.0009 -1.0935 0.4380 36 1 3.8546 0.4371 1.3344 37 1 5.1577 -1.2092 2.6384 38 1 3.6196 -0.8426 3.4564 39 1 4.2209 -3.2751 1.7106 40 1 3.9692 -3.2674 3.4740 41 1 3.1926 -4.5293 4.2454 42 1 1.7991 -5.7788 5.8057 43 1 0.2251 -2.6034 5.2342 44 1 -2.1696 -2.0835 5.3992 45 1 -7.7465 -3.3212 5.5105 46 1 -3.0865 -6.2643 5.4670 47 1 -0.6959 -6.7994 5.2913 48 1 0.5532 -2.2846 1.2400 49 1 1.9965 -2.6350 0.2544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492217926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:50 Heat of formation + Delta-G solvation = -88.900919 kcal Electronic energy + Delta-G solvation = -30423.811565 eV Core-core repulsion = 26316.128480 eV Total energy + Delta-G solvation = -4107.683086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45719 -40.68569 -39.61107 -38.22213 -37.25139 -34.66098 -34.13243 -33.72837 -32.70197 -31.83235 -30.45774 -29.53236 -27.50726 -26.72507 -25.23627 -24.14921 -23.47761 -22.52267 -22.21812 -20.87540 -19.94034 -19.38891 -18.78246 -18.42582 -17.53205 -17.12034 -16.52074 -16.39223 -16.25953 -15.86502 -15.57927 -15.50943 -15.35571 -15.30717 -15.06164 -14.85687 -14.48675 -14.39279 -14.20451 -13.96935 -13.74208 -13.61021 -13.53916 -13.17094 -13.02221 -12.96692 -12.66512 -12.41197 -12.33515 -12.23994 -12.10261 -11.94055 -11.84922 -11.81764 -11.41555 -11.28662 -10.94695 -10.80972 -10.54297 -10.39349 -9.76585 -9.42349 -8.59266 -8.49645 -6.16506 0.02600 0.69242 1.06653 1.32895 1.43407 1.52225 2.11955 2.16294 2.44201 2.85264 3.20442 3.38597 3.49621 3.56268 3.74720 3.87132 3.92749 3.96110 4.10724 4.12114 4.15616 4.20761 4.22920 4.33326 4.38188 4.51432 4.53783 4.66283 4.71490 4.74901 4.80517 4.86783 4.89954 4.95776 5.02872 5.08476 5.09858 5.13292 5.15814 5.24371 5.26169 5.28182 5.43054 5.47024 5.63530 5.67885 5.71971 5.82383 6.01339 6.23858 6.54470 6.70826 6.94816 7.37782 7.77317 8.74301 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002618 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.710499 B =10692.127463 C =12163.106884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.118 3.882 3 H 0.108 0.892 4 O -0.570 6.570 5 C -0.126 4.126 6 H 0.066 0.934 7 C -0.106 4.106 8 C -0.132 4.132 9 C 0.100 3.900 10 N -0.610 5.610 11 C 0.526 3.474 12 O -0.568 6.568 13 C -0.230 4.230 14 C 0.005 3.995 15 C -0.150 4.150 16 C 0.002 3.998 17 C -0.216 4.216 18 C 0.125 3.875 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.102 0.898 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.022 2.978 25 H -0.250 1.250 26 H -0.266 1.266 27 H -0.269 1.269 28 C -0.253 4.253 29 C -0.051 4.051 30 C 0.112 3.888 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.381 0.619 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.273 0.727 46 H 0.119 0.881 47 H 0.147 0.853 48 H 0.063 0.937 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.572 0.723 -7.303 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.059 3.941 3 H 0.126 0.874 4 O -0.378 6.378 5 C -0.146 4.146 6 H 0.084 0.916 7 C -0.144 4.144 8 C -0.170 4.170 9 C -0.021 4.021 10 N -0.343 5.343 11 C 0.318 3.682 12 O -0.449 6.449 13 C -0.250 4.250 14 C -0.015 4.015 15 C -0.151 4.151 16 C -0.016 4.016 17 C -0.235 4.235 18 C 0.074 3.926 19 O -0.139 6.139 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.222 4.222 23 N -0.559 5.559 24 Si 0.840 3.160 25 H -0.173 1.173 26 H -0.190 1.190 27 H -0.194 1.194 28 C -0.272 4.272 29 C -0.069 4.069 30 C -0.011 4.011 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.192 0.808 42 H 0.188 0.812 43 H 0.136 0.864 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.164 0.836 48 H 0.081 0.919 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.912 1.623 -7.515 27.989 hybrid contribution -1.701 -0.505 0.090 1.777 sum 25.211 1.118 -7.425 26.305 Atomic orbital electron populations 1.22561 0.97068 1.02414 1.02756 1.21838 0.92140 0.96649 0.83504 0.87374 1.86538 1.77136 1.30030 1.44062 1.22132 0.98342 0.95147 0.98967 0.91587 1.21484 0.92732 1.01526 0.98615 1.21933 1.02556 0.94720 0.97835 1.22071 0.78289 0.97655 1.04075 1.48107 1.09333 1.48745 1.28104 1.19138 0.86465 0.79601 0.82964 1.90997 1.15678 1.65404 1.72809 1.23174 1.01633 1.03485 0.96756 1.22610 0.90065 0.94090 0.94706 1.18857 0.94490 0.92357 1.09370 1.20625 0.92706 0.95869 0.92395 1.20175 0.93047 0.96878 1.13422 1.19992 0.84613 0.94557 0.93440 1.83888 1.13161 1.36675 1.80152 1.21898 0.87332 0.89229 1.50475 0.88092 1.26671 0.98064 1.01428 0.96020 1.70181 1.14332 1.23277 1.48149 0.84497 0.76898 0.76043 0.78530 1.17324 1.19039 1.19354 1.21093 0.97730 0.95115 1.13302 1.21152 0.90951 0.99419 0.95379 1.21559 0.98649 0.91825 0.89104 0.92024 0.91401 0.92982 0.76901 0.90727 0.91071 0.88118 0.92578 0.89833 0.87552 0.80846 0.81220 0.86449 0.88138 0.91779 0.86332 0.83555 0.91884 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.70 9.30 71.98 0.67 -3.03 16 2 C 0.12 1.94 3.34 30.60 0.10 2.04 16 3 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 4 O -0.57 -9.50 12.80 -148.98 -1.91 -11.41 16 5 C -0.13 -2.10 2.17 -10.71 -0.02 -2.13 16 6 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 7 C -0.11 -1.28 5.05 30.62 0.15 -1.12 16 8 C -0.13 -1.32 6.08 30.67 0.19 -1.13 16 9 C 0.10 1.10 6.29 86.36 0.54 1.64 16 10 N -0.61 -12.16 2.97 -824.12 -2.45 -14.61 16 11 C 0.53 14.19 6.82 86.32 0.59 14.77 16 12 O -0.57 -21.87 11.91 -4.42 -0.05 -21.92 16 13 C -0.23 -4.53 9.12 23.61 0.22 -4.31 16 14 C 0.00 0.10 9.77 23.82 0.23 0.33 16 15 C -0.15 -5.19 4.33 -20.13 -0.09 -5.28 16 16 C 0.00 0.09 6.77 22.55 0.15 0.25 16 17 C -0.22 -10.57 9.97 22.35 0.22 -10.35 16 18 C 0.12 6.82 6.65 22.72 0.15 6.97 16 19 O -0.23 -14.96 9.74 -20.25 -0.20 -15.16 16 20 C -0.41 -25.29 9.42 67.93 0.64 -24.65 16 21 H 0.10 5.69 5.31 -2.91 -0.02 5.67 16 22 C -0.02 -1.45 5.49 84.86 0.47 -0.98 16 23 N -0.92 -58.66 13.67 21.62 0.30 -58.37 16 24 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 C -0.25 -12.02 9.10 22.34 0.20 -11.82 16 29 C -0.05 -1.92 9.78 22.55 0.22 -1.70 16 30 C 0.11 2.25 5.06 86.36 0.44 2.68 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.13 6.70 -2.38 -0.02 1.11 16 34 H 0.38 4.81 7.08 -74.06 -0.52 4.28 16 35 H 0.07 0.87 7.86 -2.39 -0.02 0.85 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 0.78 5.48 -2.39 -0.01 0.76 16 41 H 0.17 1.73 6.11 -2.91 -0.02 1.71 16 42 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.12 4.17 7.46 -2.91 -0.02 4.15 16 44 H 0.10 4.97 8.06 -2.92 -0.02 4.94 16 45 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.12 5.66 5.72 -2.91 -0.02 5.64 16 47 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 48 H 0.06 1.74 5.72 -2.38 -0.01 1.73 16 49 H 0.08 1.28 6.45 -2.39 -0.02 1.27 16 Total: -1.00 -84.37 388.00 3.24 -81.13 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.45 Total: 31.78 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 5.08 Total: -37.81 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -2.15 Total: -72.98 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -2.16 Total: -48.49 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.37 3.24 -81.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492217926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.775 kcal (2) G-P(sol) polarization free energy of solvation -84.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds