Wall clock time and date at job start Wed Apr 1 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.50239 * 2 1 4 4 C 1.53037 * 109.49888 * 239.90047 * 2 1 3 5 5 C 1.53050 * 109.53965 * 301.41462 * 4 2 1 6 6 C 1.53188 * 109.31015 * 298.63721 * 5 4 2 7 7 N 1.46918 * 108.78152 * 54.62862 * 6 5 4 8 8 C 1.34782 * 120.63306 * 126.36872 * 7 6 5 9 9 O 1.21721 * 120.00236 * 186.06795 * 8 7 6 10 10 C 1.46250 * 119.99542 * 6.06623 * 8 7 6 11 11 C 1.35025 * 119.99877 * 172.83337 * 10 8 7 12 12 C 1.46965 * 119.99789 * 345.60289 * 11 10 8 13 13 C 1.40019 * 120.09762 * 317.53304 * 12 11 10 14 14 C 1.37608 * 119.89430 * 179.69960 * 13 12 11 15 15 C 1.39178 * 120.09903 * 0.60359 * 14 13 12 16 16 O 1.35572 * 119.89721 * 179.69476 * 15 14 13 17 17 C 1.34777 * 116.99662 * 185.89729 * 16 15 14 18 18 H 1.08001 * 120.00831 * 5.40207 * 17 16 15 19 19 C 1.38728 * 119.99838 * 185.39270 * 17 16 15 20 20 N 1.31511 * 119.99593 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47118 * 90.00194 * 21 19 17 23 23 H 1.48496 * 109.47433 * 210.00292 * 21 19 17 24 24 H 1.48501 * 109.47456 * 330.00458 * 21 19 17 25 25 C 1.39181 * 120.20383 * 359.67358 * 15 14 13 26 26 C 1.37601 * 120.09959 * 0.02562 * 25 15 14 27 27 C 1.46932 * 118.73932 * 306.39482 * 7 6 5 28 28 H 1.08994 * 109.58338 * 293.81496 * 27 7 6 29 29 C 1.53000 * 109.58585 * 173.39408 * 27 7 6 30 30 O 1.42894 * 109.47513 * 69.52162 * 29 27 7 31 31 H 1.09002 * 109.47158 * 299.93896 * 1 2 3 32 32 H 1.08997 * 109.47260 * 59.93303 * 1 2 3 33 33 H 1.08997 * 109.47611 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46086 * 61.43011 * 4 2 1 35 35 H 1.08999 * 109.46291 * 181.39163 * 4 2 1 36 36 H 1.09001 * 109.49185 * 58.57788 * 5 4 2 37 37 H 1.08994 * 109.49771 * 178.68249 * 5 4 2 38 38 H 1.09000 * 109.58784 * 174.42099 * 6 5 4 39 39 H 1.09006 * 109.58541 * 294.69794 * 6 5 4 40 40 H 1.08000 * 120.00369 * 352.83960 * 10 8 7 41 41 H 1.07999 * 120.00186 * 165.59111 * 11 10 8 42 42 H 1.07992 * 120.05419 * 0.02562 * 13 12 11 43 43 H 1.07994 * 119.94829 * 180.31843 * 14 13 12 44 44 H 0.96998 * 119.99506 * 179.97438 * 20 19 17 45 45 H 1.07993 * 119.94821 * 180.02562 * 25 15 14 46 46 H 1.07999 * 120.04850 * 180.02562 * 26 25 15 47 47 H 1.09003 * 109.46741 * 189.52213 * 29 27 7 48 48 H 1.09002 * 109.47453 * 309.52007 * 29 27 7 49 49 H 0.96693 * 114.00303 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0407 -0.7235 -1.2481 5 6 1.5029 -2.1563 -1.2653 6 6 2.0139 -2.9040 -0.0298 7 7 1.6515 -2.1378 1.1702 8 6 0.9739 -2.7211 2.1788 9 8 0.5832 -2.0513 3.1171 10 6 0.7081 -4.1589 2.1458 11 6 0.1592 -4.7688 3.2182 12 6 0.1190 -4.0788 4.5152 13 6 1.2336 -3.3591 4.9625 14 6 1.1892 -2.7095 6.1748 15 6 0.0431 -2.7775 6.9615 16 8 0.0060 -2.1410 8.1579 17 6 -1.0828 -2.3447 8.9258 18 1 -1.8341 -3.0575 8.6195 19 6 -1.2384 -1.6389 10.1099 20 7 -0.3237 -0.7707 10.4828 21 14 -2.7469 -1.9217 11.1745 22 1 -2.4689 -3.0077 12.1484 23 1 -3.0773 -0.6728 11.9068 24 1 -3.8940 -2.3096 10.3148 25 6 -1.0652 -3.4964 6.5234 26 6 -1.0320 -4.1441 5.3098 27 6 2.0413 -0.7234 1.2498 28 1 3.1274 -0.6460 1.2982 29 6 1.4229 -0.0904 2.4979 30 8 2.0518 -0.6247 3.6645 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6986 -0.1965 -2.1388 35 1 3.1304 -0.7448 -1.2351 36 1 0.4132 -2.1359 -1.2533 37 1 1.8480 -2.6635 -2.1662 38 1 1.5553 -3.8919 0.0150 39 1 3.0976 -3.0066 -0.0870 40 1 0.9509 -4.7329 1.2638 41 1 -0.2504 -5.7635 3.1228 42 1 2.1250 -3.3096 4.3548 43 1 2.0466 -2.1499 6.5184 44 1 -0.4327 -0.2769 11.3106 45 1 -1.9525 -3.5461 7.1370 46 1 -1.8927 -4.7014 4.9705 47 1 1.5696 0.9893 2.4683 48 1 0.3560 -0.3115 2.5269 49 1 1.7091 -0.2671 4.4949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492363032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:15 Heat of formation + Delta-G solvation = -57.602258 kcal Electronic energy + Delta-G solvation = -31584.601332 eV Core-core repulsion = 27478.275458 eV Total energy + Delta-G solvation = -4106.325874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.71901 -40.63921 -39.04952 -37.82511 -37.13938 -34.65953 -34.46760 -33.76498 -32.86204 -31.73860 -29.76409 -28.49657 -27.37907 -27.19879 -25.28155 -24.34932 -23.44273 -22.75310 -22.06076 -20.31003 -19.71076 -19.23538 -18.65071 -18.19488 -17.85886 -16.94199 -16.41234 -16.38801 -16.19509 -15.93450 -15.52469 -15.47546 -15.37342 -15.14912 -14.74752 -14.59506 -14.39717 -14.30212 -14.19987 -13.82501 -13.74901 -13.59592 -13.49968 -13.02982 -12.92233 -12.73832 -12.59689 -12.39797 -12.24679 -12.13883 -12.06749 -11.99033 -11.74483 -11.32681 -11.24637 -11.19399 -10.88690 -10.70372 -10.25009 -9.92350 -9.62146 -9.18582 -8.47147 -8.45353 -6.12932 0.06587 0.79495 1.19743 1.33846 1.46351 1.51724 2.17965 2.22410 2.62440 2.90398 3.29052 3.35237 3.56016 3.65426 3.84719 4.04256 4.05189 4.12293 4.19318 4.24253 4.25620 4.27724 4.41107 4.44386 4.50845 4.62253 4.64878 4.66333 4.77100 4.80092 4.83921 4.91905 4.99182 5.04858 5.11076 5.14120 5.17350 5.21236 5.24420 5.28161 5.32965 5.34555 5.51174 5.53971 5.74660 5.77672 5.82489 5.94588 6.05450 6.31319 6.72264 6.89381 6.97844 7.61376 7.81503 8.76469 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.002786 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.125018 B =10049.092609 C =10745.186581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.100 3.900 7 N -0.607 5.607 8 C 0.523 3.477 9 O -0.523 6.523 10 C -0.237 4.237 11 C -0.002 4.002 12 C -0.156 4.156 13 C 0.028 3.972 14 C -0.208 4.208 15 C 0.129 3.871 16 O -0.231 6.231 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.259 4.259 26 C -0.050 4.050 27 C 0.157 3.843 28 H 0.067 0.933 29 C 0.088 3.912 30 O -0.566 6.566 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.272 0.728 45 H 0.115 0.885 46 H 0.141 0.859 47 H 0.030 0.970 48 H 0.051 0.949 49 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -5.180 -28.190 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.105 0.895 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.021 4.021 7 N -0.341 5.341 8 C 0.315 3.685 9 O -0.401 6.401 10 C -0.257 4.257 11 C -0.021 4.021 12 C -0.157 4.157 13 C 0.010 3.990 14 C -0.227 4.227 15 C 0.078 3.922 16 O -0.137 6.137 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.186 1.186 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.279 4.279 26 C -0.068 4.068 27 C 0.053 3.947 28 H 0.085 0.915 29 C 0.010 3.990 30 O -0.371 6.371 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.182 0.818 41 H 0.179 0.821 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.048 0.952 48 H 0.069 0.931 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.097 -4.856 -27.883 28.471 hybrid contribution -0.728 0.864 1.491 1.870 sum 2.369 -3.992 -26.391 26.797 Atomic orbital electron populations 1.21828 0.95137 1.01646 1.01365 1.21454 0.96279 0.99741 0.94028 0.89534 1.21524 1.00884 0.95754 0.96513 1.21973 1.01332 0.95907 0.97961 1.22015 1.00905 0.95902 0.83299 1.47985 1.56475 1.10543 1.19127 1.18839 0.78453 0.89475 0.81752 1.90937 1.50439 1.64413 1.34358 1.23224 1.07620 0.93331 1.01549 1.22520 0.91139 0.98931 0.89513 1.18822 0.94924 1.05240 0.96665 1.20548 0.97128 0.90153 0.91217 1.20064 0.96604 1.08534 0.97499 1.20003 0.94781 0.91556 0.85854 1.83884 1.42445 1.62338 1.25021 1.21821 0.99867 1.24667 1.02442 0.88288 1.26613 1.02426 0.94868 0.98186 1.70174 1.36138 1.25630 1.23933 0.84590 0.75730 0.78433 0.77469 1.18646 1.19538 1.17724 1.21044 0.99100 1.07307 1.00406 1.21116 0.97540 0.96384 0.91757 1.21158 0.98315 0.81253 0.93954 0.91466 1.22214 0.97677 0.93845 0.85238 1.86380 1.64244 1.70405 1.16068 0.94424 0.91232 0.93083 0.90178 0.91116 0.91741 0.88433 0.87931 0.90848 0.81803 0.82099 0.86892 0.88121 0.91853 0.86711 0.84117 0.95180 0.93069 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.22 71.98 0.59 -1.94 16 2 C -0.10 -1.51 2.80 -10.72 -0.03 -1.54 16 3 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.11 -1.15 5.43 30.62 0.17 -0.98 16 5 C -0.13 -1.26 5.74 30.67 0.18 -1.09 16 6 C 0.10 1.25 6.31 86.36 0.54 1.80 16 7 N -0.61 -12.84 2.41 -800.18 -1.93 -14.77 16 8 C 0.52 14.29 6.32 86.32 0.55 14.84 16 9 O -0.52 -18.60 6.73 19.66 0.13 -18.46 16 10 C -0.24 -5.09 9.18 23.61 0.22 -4.87 16 11 C 0.00 -0.04 9.80 23.82 0.23 0.19 16 12 C -0.16 -5.44 4.49 -20.13 -0.09 -5.53 16 13 C 0.03 1.10 6.46 22.55 0.15 1.25 16 14 C -0.21 -9.85 9.97 22.35 0.22 -9.62 16 15 C 0.13 6.88 6.66 22.72 0.15 7.03 16 16 O -0.23 -14.57 9.74 -20.24 -0.20 -14.77 16 17 C -0.41 -24.98 9.44 67.94 0.64 -24.34 16 18 H 0.10 5.55 5.28 -2.91 -0.02 5.54 16 19 C -0.02 -1.39 5.49 84.86 0.47 -0.92 16 20 N -0.92 -58.20 13.67 21.63 0.30 -57.91 16 21 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 25 C -0.26 -12.19 9.11 22.35 0.20 -11.99 16 26 C -0.05 -1.88 9.78 22.55 0.22 -1.66 16 27 C 0.16 3.47 2.87 44.97 0.13 3.60 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 C 0.09 2.54 4.79 71.98 0.34 2.88 16 30 O -0.57 -19.76 10.66 -124.90 -1.33 -21.09 16 31 H 0.04 0.82 6.56 -2.39 -0.02 0.80 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.00 5.97 -2.39 -0.01 0.99 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.74 6.33 -2.39 -0.02 0.72 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 0.94 5.38 -2.39 -0.01 0.93 16 39 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.16 2.09 5.90 -2.91 -0.02 2.07 16 41 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.11 4.27 7.09 -2.91 -0.02 4.25 16 43 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.12 5.47 5.69 -2.91 -0.02 5.45 16 46 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 47 H 0.03 0.80 8.13 -2.39 -0.02 0.78 16 48 H 0.05 1.72 5.05 -2.39 -0.01 1.70 16 49 H 0.37 13.47 9.12 -74.06 -0.68 12.79 16 Total: -1.00 -79.06 376.92 4.18 -74.87 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: 0.31 Total: 38.73 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 4.88 Total: -32.89 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.63 Total: -72.67 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.40 Total: -54.32 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -79.06 4.18 -74.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492363032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.268 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds