Wall clock time and date at job start Wed Apr 1 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.58324 * 2 1 4 4 C 1.53191 * 109.58706 * 120.28684 * 2 1 3 5 5 C 1.53037 * 109.31193 * 174.42213 * 4 2 1 6 6 H 1.08997 * 109.46153 * 58.65164 * 5 4 2 7 7 C 1.52999 * 109.46227 * 178.61570 * 5 4 2 8 8 O 1.42895 * 109.47554 * 184.99950 * 7 5 4 9 9 C 1.53044 * 109.53759 * 298.63496 * 5 4 2 10 10 C 1.53191 * 109.31193 * 61.36713 * 9 5 4 11 11 N 1.46925 * 108.77779 * 305.36108 * 10 9 5 12 12 C 1.34768 * 120.63467 * 233.63496 * 11 10 9 13 13 O 1.21725 * 120.00064 * 186.71562 * 12 11 10 14 14 C 1.46256 * 119.99793 * 6.70969 * 12 11 10 15 15 C 1.35026 * 119.99747 * 173.05061 * 14 12 11 16 16 C 1.46965 * 120.00096 * 347.80798 * 15 14 12 17 17 C 1.40027 * 120.09452 * 315.85135 * 16 15 14 18 18 C 1.37602 * 119.88789 * 179.74122 * 17 16 15 19 19 C 1.39176 * 120.10648 * 0.51686 * 18 17 16 20 20 O 1.35570 * 119.89810 * 179.73864 * 19 18 17 21 21 C 1.34784 * 116.99763 * 185.52093 * 20 19 18 22 22 H 1.07992 * 119.99759 * 5.20273 * 21 20 19 23 23 C 1.38719 * 119.99882 * 185.20159 * 21 20 19 24 24 N 1.31499 * 120.00197 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99929 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47435 * 89.99617 * 25 23 21 27 27 H 1.48496 * 109.46887 * 209.99636 * 25 23 21 28 28 H 1.48504 * 109.46854 * 329.99614 * 25 23 21 29 29 C 1.39177 * 120.20045 * 359.76535 * 19 18 17 30 30 C 1.37599 * 120.10399 * 359.96998 * 29 19 18 31 31 H 1.08997 * 109.47027 * 291.67100 * 1 2 3 32 32 H 1.08993 * 109.46756 * 171.66702 * 1 2 3 33 33 H 1.09006 * 109.46790 * 51.66598 * 1 2 3 34 34 H 1.09001 * 109.49677 * 294.37257 * 4 2 1 35 35 H 1.08996 * 109.49261 * 54.47224 * 4 2 1 36 36 H 1.09002 * 109.46656 * 305.00328 * 7 5 4 37 37 H 1.08998 * 109.46722 * 64.99548 * 7 5 4 38 38 H 0.96696 * 114.00201 * 180.02562 * 8 7 5 39 39 H 1.09003 * 109.49518 * 181.31905 * 9 5 4 40 40 H 1.08997 * 109.49843 * 301.38189 * 9 5 4 41 41 H 1.08999 * 109.58601 * 65.15292 * 10 9 5 42 42 H 1.09006 * 109.58591 * 185.57422 * 10 9 5 43 43 H 1.07992 * 120.00409 * 353.05194 * 14 12 11 44 44 H 1.07997 * 120.00127 * 167.80046 * 15 14 12 45 45 H 1.07990 * 120.05339 * 359.97438 * 17 16 15 46 46 H 1.07998 * 119.94504 * 180.27917 * 18 17 16 47 47 H 0.96999 * 120.00504 * 180.02562 * 24 23 21 48 48 H 1.07996 * 119.94741 * 179.97438 * 29 19 18 49 49 H 1.07994 * 120.05408 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8466 1.1711 6 1 4.0062 0.1487 1.0990 7 6 4.0874 -1.5425 2.4306 8 8 5.5162 -1.5497 2.4156 9 6 3.9569 -1.6658 -0.0616 10 6 3.4651 -0.9485 -1.3226 11 7 2.0226 -0.7010 -1.1937 12 6 1.1674 -1.1095 -2.1519 13 8 -0.0067 -0.7931 -2.0950 14 6 1.6500 -1.9330 -3.2601 15 6 0.7732 -2.4589 -4.1420 16 6 -0.6668 -2.4358 -3.8493 17 6 -1.1292 -2.7754 -2.5720 18 6 -2.4780 -2.7472 -2.3011 19 6 -3.3828 -2.3922 -3.2972 20 8 -4.7112 -2.3709 -3.0271 21 6 -5.5420 -2.1311 -4.0610 22 1 -5.1476 -2.0503 -5.0631 23 6 -6.9036 -1.9882 -3.8379 24 7 -7.7142 -1.7537 -4.8465 25 14 -7.5857 -2.1273 -2.1044 26 1 -7.5924 -0.7866 -1.4659 27 1 -8.9721 -2.6565 -2.1590 28 1 -6.7347 -3.0495 -1.3102 29 6 -2.9281 -2.0596 -4.5698 30 6 -1.5808 -2.0798 -4.8485 31 1 -0.3633 0.3795 0.9550 32 1 -0.3632 -1.0168 -0.1489 33 1 -0.3633 0.6375 -0.8062 34 1 1.7661 -0.1642 2.1370 35 1 1.6030 -1.7237 1.2933 36 1 3.7359 -1.0072 3.3127 37 1 3.7191 -2.5680 2.4573 38 1 5.9155 -1.9766 3.1859 39 1 5.0412 -1.7697 -0.1016 40 1 3.4988 -2.6530 -0.0019 41 1 3.9904 0.0003 -1.4317 42 1 3.6519 -1.5743 -2.1954 43 1 2.7075 -2.1203 -3.3730 44 1 1.1302 -2.8966 -5.0626 45 1 -0.4281 -3.0554 -1.7998 46 1 -2.8353 -3.0046 -1.3150 47 1 -8.6663 -1.6534 -4.6904 48 1 -3.6339 -1.7851 -5.3398 49 1 -1.2289 -1.8219 -5.8364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493614460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:38 Heat of formation + Delta-G solvation = -46.187256 kcal Electronic energy + Delta-G solvation = -30520.736814 eV Core-core repulsion = 26414.905931 eV Total energy + Delta-G solvation = -4105.830882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.62339 -39.11247 -38.28207 -36.94139 -36.18914 -33.74361 -33.21282 -32.49792 -32.08055 -30.20018 -28.67496 -27.82993 -26.28170 -25.39564 -23.70459 -23.50290 -21.94992 -21.51187 -20.77144 -20.11969 -18.38323 -17.78391 -17.70032 -17.29188 -16.93038 -16.04787 -15.60799 -15.13280 -14.93230 -14.73737 -14.63908 -14.26428 -14.03268 -13.86228 -13.66459 -13.53200 -13.23256 -13.00280 -12.90267 -12.63298 -12.51245 -12.45573 -12.26311 -12.14443 -12.03836 -11.77489 -11.40249 -11.14349 -11.10297 -10.96601 -10.92657 -10.80519 -10.69209 -10.58250 -10.31737 -10.11780 -9.47851 -9.20642 -8.89474 -8.72655 -8.53734 -7.98038 -6.96399 -6.41600 -4.05275 1.20188 2.33682 2.61601 3.03883 3.23404 3.27593 3.41955 3.56863 3.77201 4.24871 4.33021 4.43668 4.62945 4.64648 4.78544 4.82865 4.91276 4.97639 5.03843 5.08951 5.10703 5.12899 5.18705 5.29550 5.44717 5.47531 5.52143 5.56460 5.63573 5.69165 5.73708 5.77009 5.79727 5.88889 6.02639 6.19032 6.24362 6.27568 6.38187 6.47556 6.54124 6.69224 6.80030 6.93346 7.19190 7.19483 7.32639 7.39580 7.57210 7.67873 7.84843 8.07066 8.52145 8.93764 9.58526 10.65826 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002493 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.373579 B =11230.533063 C =12308.605460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 H 0.065 0.935 4 C -0.125 4.125 5 C -0.087 4.087 6 H 0.078 0.922 7 C 0.080 3.920 8 O -0.574 6.574 9 C -0.126 4.126 10 C 0.108 3.892 11 N -0.615 5.615 12 C 0.543 3.457 13 O -0.504 6.504 14 C -0.266 4.266 15 C 0.023 3.977 16 C -0.175 4.175 17 C 0.007 3.993 18 C -0.201 4.201 19 C 0.176 3.824 20 O -0.213 6.213 21 C -0.387 4.387 22 H 0.107 0.893 23 C 0.063 3.937 24 N -0.877 5.877 25 Si 0.905 3.095 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.259 1.259 29 C -0.236 4.236 30 C -0.044 4.044 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.378 0.622 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.280 0.720 48 H 0.132 0.868 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.035 -0.129 11.415 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.083 0.917 4 C -0.164 4.164 5 C -0.105 4.105 6 H 0.096 0.904 7 C 0.002 3.998 8 O -0.379 6.379 9 C -0.164 4.164 10 C -0.016 4.016 11 N -0.351 5.351 12 C 0.335 3.665 13 O -0.380 6.380 14 C -0.287 4.287 15 C 0.003 3.997 16 C -0.176 4.176 17 C -0.012 4.012 18 C -0.220 4.220 19 C 0.123 3.877 20 O -0.117 6.117 21 C -0.462 4.462 22 H 0.125 0.875 23 C -0.140 4.140 24 N -0.515 5.515 25 Si 0.731 3.269 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.183 1.183 29 C -0.255 4.255 30 C -0.063 4.063 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.225 0.775 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.120 0.880 46 H 0.131 0.869 47 H 0.090 0.910 48 H 0.149 0.851 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 24.892 0.369 11.012 27.221 hybrid contribution -0.074 -0.191 1.132 1.150 sum 24.818 0.179 12.144 27.630 Atomic orbital electron populations 1.22201 0.91963 1.04586 1.00705 1.21130 0.96118 0.94576 0.83488 0.91706 1.22018 0.94120 1.01954 0.98268 1.21129 0.95360 1.00062 0.93986 0.90390 1.22237 0.80716 0.99277 0.97538 1.86463 1.19852 1.82877 1.48713 1.21917 1.01651 0.99032 0.93783 1.21760 0.80821 1.00313 0.98668 1.48128 1.06960 1.59314 1.20697 1.18426 0.85599 0.80559 0.81929 1.91025 1.16204 1.55958 1.74844 1.22814 0.99514 1.06257 1.00139 1.22352 0.92607 0.89499 0.95207 1.18346 0.91398 1.12824 0.95066 1.20424 0.93527 0.93658 0.93571 1.19976 0.92061 1.11402 0.98590 1.19272 0.83740 0.91765 0.92935 1.83520 1.12550 1.78154 1.37520 1.20814 0.87968 1.49831 0.87612 0.87522 1.24491 0.94740 0.95516 0.99302 1.69620 1.04681 1.46139 1.31021 0.86182 0.78003 0.79437 0.83313 1.19860 1.20766 1.18296 1.21074 0.95832 1.10629 0.97966 1.20793 0.92378 0.96113 0.96994 0.94215 0.91056 0.90224 0.90767 0.91162 0.93649 0.93594 0.77499 0.90193 0.91578 0.91797 0.89241 0.85952 0.86036 0.88025 0.86931 0.91016 0.85075 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.62 37.16 0.28 -1.56 16 2 C 0.15 1.62 3.49 -67.59 -0.24 1.39 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.13 -1.06 4.64 -26.61 -0.12 -1.19 16 5 C -0.09 -0.66 2.39 -90.58 -0.22 -0.88 16 6 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 7 C 0.08 0.52 6.43 37.16 0.24 0.76 16 8 O -0.57 -3.96 13.17 -35.23 -0.46 -4.43 16 9 C -0.13 -0.96 5.27 -26.61 -0.14 -1.10 16 10 C 0.11 0.89 6.35 -3.71 -0.02 0.87 16 11 N -0.62 -6.95 2.97 -166.90 -0.50 -7.45 16 12 C 0.54 7.69 6.44 -13.04 -0.08 7.61 16 13 O -0.50 -8.95 7.94 5.17 0.04 -8.91 16 14 C -0.27 -3.27 9.23 -37.50 -0.35 -3.61 16 15 C 0.02 0.31 9.80 -37.19 -0.36 -0.05 16 16 C -0.18 -3.10 4.48 -105.02 -0.47 -3.57 16 17 C 0.01 0.13 6.67 -39.14 -0.26 -0.14 16 18 C -0.20 -4.27 9.97 -39.47 -0.39 -4.67 16 19 C 0.18 4.25 6.66 -38.88 -0.26 3.99 16 20 O -0.21 -5.80 8.57 0.73 0.01 -5.79 16 21 C -0.39 -11.11 9.90 30.91 0.31 -10.80 16 22 H 0.11 3.12 5.50 -52.49 -0.29 2.84 16 23 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 24 N -0.88 -25.57 13.96 55.48 0.77 -24.79 16 25 Si 0.91 22.04 28.62 -169.99 -4.86 17.18 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.26 -6.33 7.11 56.52 0.40 -5.92 16 29 C -0.24 -5.32 9.11 -39.47 -0.36 -5.68 16 30 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 31 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.07 1.10 6.76 -51.93 -0.35 0.75 16 33 H 0.08 1.28 6.73 -51.93 -0.35 0.93 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.38 1.00 9.12 45.56 0.42 1.42 16 39 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.65 5.31 -51.93 -0.28 0.37 16 43 H 0.12 1.10 5.86 -52.49 -0.31 0.80 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.10 1.72 7.13 -52.49 -0.37 1.35 16 46 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 47 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.13 3.09 5.68 -52.49 -0.30 2.79 16 49 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -32.84 385.90 -8.56 -41.40 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.44 Total: 5.14 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.93 Total: -18.16 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.28 Total: -32.24 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.42 Total: -19.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.84 -8.56 -41.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493614460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.789 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds