Wall clock time and date at job start Wed Apr 1 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.58324 * 2 1 4 4 C 1.53191 * 109.58706 * 120.28684 * 2 1 3 5 5 C 1.53037 * 109.31193 * 174.42213 * 4 2 1 6 6 H 1.08997 * 109.46153 * 58.65164 * 5 4 2 7 7 C 1.52999 * 109.46227 * 178.61570 * 5 4 2 8 8 O 1.42895 * 109.47554 * 184.99950 * 7 5 4 9 9 C 1.53044 * 109.53759 * 298.63496 * 5 4 2 10 10 C 1.53191 * 109.31193 * 61.36713 * 9 5 4 11 11 N 1.46925 * 108.77779 * 305.36108 * 10 9 5 12 12 C 1.34768 * 120.63467 * 233.63496 * 11 10 9 13 13 O 1.21725 * 120.00064 * 186.71562 * 12 11 10 14 14 C 1.46256 * 119.99793 * 6.70969 * 12 11 10 15 15 C 1.35026 * 119.99747 * 173.05061 * 14 12 11 16 16 C 1.46965 * 120.00096 * 347.80798 * 15 14 12 17 17 C 1.40027 * 120.09452 * 315.85135 * 16 15 14 18 18 C 1.37602 * 119.88789 * 179.74122 * 17 16 15 19 19 C 1.39176 * 120.10648 * 0.51686 * 18 17 16 20 20 O 1.35570 * 119.89810 * 179.73864 * 19 18 17 21 21 C 1.34784 * 116.99763 * 185.52093 * 20 19 18 22 22 H 1.07992 * 119.99759 * 5.20273 * 21 20 19 23 23 C 1.38719 * 119.99882 * 185.20159 * 21 20 19 24 24 N 1.31499 * 120.00197 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99929 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47435 * 89.99617 * 25 23 21 27 27 H 1.48496 * 109.46887 * 209.99636 * 25 23 21 28 28 H 1.48504 * 109.46854 * 329.99614 * 25 23 21 29 29 C 1.39177 * 120.20045 * 359.76535 * 19 18 17 30 30 C 1.37599 * 120.10399 * 359.96998 * 29 19 18 31 31 H 1.08997 * 109.47027 * 291.67100 * 1 2 3 32 32 H 1.08993 * 109.46756 * 171.66702 * 1 2 3 33 33 H 1.09006 * 109.46790 * 51.66598 * 1 2 3 34 34 H 1.09001 * 109.49677 * 294.37257 * 4 2 1 35 35 H 1.08996 * 109.49261 * 54.47224 * 4 2 1 36 36 H 1.09002 * 109.46656 * 305.00328 * 7 5 4 37 37 H 1.08998 * 109.46722 * 64.99548 * 7 5 4 38 38 H 0.96696 * 114.00201 * 180.02562 * 8 7 5 39 39 H 1.09003 * 109.49518 * 181.31905 * 9 5 4 40 40 H 1.08997 * 109.49843 * 301.38189 * 9 5 4 41 41 H 1.08999 * 109.58601 * 65.15292 * 10 9 5 42 42 H 1.09006 * 109.58591 * 185.57422 * 10 9 5 43 43 H 1.07992 * 120.00409 * 353.05194 * 14 12 11 44 44 H 1.07997 * 120.00127 * 167.80046 * 15 14 12 45 45 H 1.07990 * 120.05339 * 359.97438 * 17 16 15 46 46 H 1.07998 * 119.94504 * 180.27917 * 18 17 16 47 47 H 0.96999 * 120.00504 * 180.02562 * 24 23 21 48 48 H 1.07996 * 119.94741 * 179.97438 * 29 19 18 49 49 H 1.07994 * 120.05408 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8466 1.1711 6 1 4.0062 0.1487 1.0990 7 6 4.0874 -1.5425 2.4306 8 8 5.5162 -1.5497 2.4156 9 6 3.9569 -1.6658 -0.0616 10 6 3.4651 -0.9485 -1.3226 11 7 2.0226 -0.7010 -1.1937 12 6 1.1674 -1.1095 -2.1519 13 8 -0.0067 -0.7931 -2.0950 14 6 1.6500 -1.9330 -3.2601 15 6 0.7732 -2.4589 -4.1420 16 6 -0.6668 -2.4358 -3.8493 17 6 -1.1292 -2.7754 -2.5720 18 6 -2.4780 -2.7472 -2.3011 19 6 -3.3828 -2.3922 -3.2972 20 8 -4.7112 -2.3709 -3.0271 21 6 -5.5420 -2.1311 -4.0610 22 1 -5.1476 -2.0503 -5.0631 23 6 -6.9036 -1.9882 -3.8379 24 7 -7.7142 -1.7537 -4.8465 25 14 -7.5857 -2.1273 -2.1044 26 1 -7.5924 -0.7866 -1.4659 27 1 -8.9721 -2.6565 -2.1590 28 1 -6.7347 -3.0495 -1.3102 29 6 -2.9281 -2.0596 -4.5698 30 6 -1.5808 -2.0798 -4.8485 31 1 -0.3633 0.3795 0.9550 32 1 -0.3632 -1.0168 -0.1489 33 1 -0.3633 0.6375 -0.8062 34 1 1.7661 -0.1642 2.1370 35 1 1.6030 -1.7237 1.2933 36 1 3.7359 -1.0072 3.3127 37 1 3.7191 -2.5680 2.4573 38 1 5.9155 -1.9766 3.1859 39 1 5.0412 -1.7697 -0.1016 40 1 3.4988 -2.6530 -0.0019 41 1 3.9904 0.0003 -1.4317 42 1 3.6519 -1.5743 -2.1954 43 1 2.7075 -2.1203 -3.3730 44 1 1.1302 -2.8966 -5.0626 45 1 -0.4281 -3.0554 -1.7998 46 1 -2.8353 -3.0046 -1.3150 47 1 -8.6663 -1.6534 -4.6904 48 1 -3.6339 -1.7851 -5.3398 49 1 -1.2289 -1.8219 -5.8364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493614460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:37 Heat of formation + Delta-G solvation = -67.954339 kcal Electronic energy + Delta-G solvation = -30521.680705 eV Core-core repulsion = 26414.905931 eV Total energy + Delta-G solvation = -4106.774774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.63632 -40.76948 -39.26482 -38.20887 -37.14883 -34.89429 -34.43346 -33.98722 -33.24632 -31.84938 -29.92027 -28.90067 -27.33934 -27.04011 -24.88584 -24.19547 -23.61625 -22.80923 -21.73308 -21.02180 -19.91865 -19.36278 -18.92947 -18.22552 -18.07014 -17.04778 -16.65151 -16.39831 -16.12683 -15.85403 -15.76127 -15.63008 -15.39634 -15.28433 -14.92230 -14.67127 -14.44020 -14.27136 -14.12859 -14.06699 -13.79292 -13.61882 -13.37729 -13.31223 -13.23802 -12.96725 -12.69312 -12.54197 -12.43954 -12.26117 -12.00495 -11.94199 -11.74606 -11.58831 -11.42106 -11.34877 -10.97021 -10.80104 -10.40428 -10.06338 -9.69065 -9.34625 -8.58750 -8.52284 -6.22811 -0.01954 0.68722 1.08895 1.27920 1.34340 1.49271 2.14263 2.26162 2.48719 2.79468 3.09837 3.18377 3.28178 3.66754 3.73945 3.95448 3.97949 4.06758 4.09519 4.13948 4.15178 4.31144 4.33765 4.43097 4.51390 4.53499 4.53919 4.64712 4.69962 4.76472 4.82580 4.86816 4.89620 4.93680 5.02475 5.05863 5.14537 5.20812 5.22097 5.24927 5.38239 5.44325 5.46006 5.48662 5.67346 5.77479 5.79801 5.84971 5.90305 6.26634 6.60629 6.82013 6.93095 7.45054 7.58275 8.59379 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002493 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.373579 B =11230.533063 C =12308.605460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.086 4.086 6 H 0.076 0.924 7 C 0.082 3.918 8 O -0.590 6.590 9 C -0.119 4.119 10 C 0.103 3.897 11 N -0.609 5.609 12 C 0.527 3.473 13 O -0.550 6.550 14 C -0.233 4.233 15 C 0.000 4.000 16 C -0.145 4.145 17 C 0.011 3.989 18 C -0.205 4.205 19 C 0.133 3.867 20 O -0.244 6.244 21 C -0.399 4.399 22 H 0.081 0.919 23 C 0.010 3.990 24 N -0.920 5.920 25 Si 0.970 3.030 26 H -0.268 1.268 27 H -0.262 1.262 28 H -0.264 1.264 29 C -0.251 4.251 30 C -0.054 4.054 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.396 0.604 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.169 0.831 44 H 0.165 0.835 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.285 0.715 48 H 0.108 0.892 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.962 -0.588 12.985 33.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.045 3.955 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.104 4.104 6 H 0.094 0.906 7 C 0.004 3.996 8 O -0.398 6.398 9 C -0.157 4.157 10 C -0.019 4.019 11 N -0.343 5.343 12 C 0.319 3.681 13 O -0.430 6.430 14 C -0.253 4.253 15 C -0.019 4.019 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.224 4.224 19 C 0.083 3.917 20 O -0.152 6.152 21 C -0.475 4.475 22 H 0.099 0.901 23 C -0.188 4.188 24 N -0.561 5.561 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.187 1.187 28 H -0.189 1.189 29 C -0.270 4.270 30 C -0.072 4.072 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.246 0.754 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.186 0.814 44 H 0.182 0.818 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.095 0.905 48 H 0.125 0.875 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 29.920 -0.099 12.606 32.467 hybrid contribution -1.020 0.020 0.706 1.240 sum 28.900 -0.079 13.312 31.819 Atomic orbital electron populations 1.22007 0.94201 1.02306 1.00006 1.21169 0.94208 0.95542 0.84571 0.90876 1.21909 0.94912 1.01267 0.97343 1.21097 0.94328 1.00199 0.94811 0.90587 1.22175 0.80778 0.99425 0.97184 1.86404 1.19914 1.83336 1.50164 1.21861 1.02007 0.98597 0.93282 1.22030 0.78596 1.01474 0.99807 1.48222 1.08170 1.57951 1.19924 1.18964 0.85400 0.80826 0.82883 1.91045 1.18235 1.57608 1.76108 1.23226 1.01632 1.03103 0.97343 1.22556 0.89697 0.92026 0.97604 1.18877 0.94042 1.07899 0.93697 1.20681 0.92527 0.92819 0.94744 1.20200 0.92938 1.11049 0.98209 1.19738 0.83285 0.94110 0.94533 1.83460 1.13698 1.81230 1.36783 1.20730 0.88878 1.50525 0.87379 0.90134 1.25282 0.94825 0.95426 1.03279 1.69698 1.05178 1.48387 1.32834 0.85240 0.77855 0.79381 0.78356 1.19353 1.18683 1.18880 1.21103 0.97369 1.11471 0.97058 1.21131 0.90973 0.95962 0.99128 0.92979 0.93390 0.93510 0.89520 0.91947 0.92827 0.93268 0.75443 0.89385 0.91957 0.90618 0.87451 0.81394 0.81787 0.85879 0.86590 0.90495 0.87454 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 7.62 71.98 0.55 -2.86 16 2 C 0.15 2.89 3.49 44.97 0.16 3.05 16 3 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 4 C -0.12 -1.66 4.64 30.67 0.14 -1.52 16 5 C -0.09 -1.01 2.39 -10.77 -0.03 -1.04 16 6 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 7 C 0.08 0.81 6.43 71.98 0.46 1.27 16 8 O -0.59 -6.19 13.17 -148.98 -1.96 -8.15 16 9 C -0.12 -1.33 5.27 30.67 0.16 -1.17 16 10 C 0.10 1.22 6.35 86.36 0.55 1.77 16 11 N -0.61 -11.78 2.97 -800.15 -2.38 -14.15 16 12 C 0.53 13.35 6.44 86.33 0.56 13.90 16 13 O -0.55 -19.00 7.94 -4.43 -0.04 -19.04 16 14 C -0.23 -4.49 9.23 23.62 0.22 -4.28 16 15 C 0.00 0.01 9.80 23.82 0.23 0.24 16 16 C -0.14 -4.81 4.48 -20.12 -0.09 -4.90 16 17 C 0.01 0.38 6.67 22.55 0.15 0.53 16 18 C -0.20 -8.97 9.97 22.34 0.22 -8.75 16 19 C 0.13 6.81 6.66 22.72 0.15 6.96 16 20 O -0.24 -14.23 8.57 -20.29 -0.17 -14.41 16 21 C -0.40 -24.68 9.90 67.93 0.67 -24.01 16 22 H 0.08 5.21 5.50 -2.91 -0.02 5.19 16 23 C 0.01 0.63 5.49 84.86 0.47 1.09 16 24 N -0.92 -56.54 13.96 21.62 0.30 -56.24 16 25 Si 0.97 47.46 28.62 68.60 1.96 49.42 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 27 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 29 C -0.25 -11.99 9.11 22.34 0.20 -11.79 16 30 C -0.05 -2.04 9.78 22.55 0.22 -1.81 16 31 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.05 1.49 6.76 -2.39 -0.02 1.47 16 33 H 0.05 1.54 6.73 -2.38 -0.02 1.53 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 38 H 0.40 0.88 9.12 -74.06 -0.68 0.20 16 39 H 0.09 0.91 7.79 -2.39 -0.02 0.89 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 0.88 5.31 -2.38 -0.01 0.87 16 43 H 0.17 1.78 5.86 -2.91 -0.02 1.76 16 44 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.12 3.92 7.13 -2.92 -0.02 3.90 16 46 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 47 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 48 H 0.11 5.56 5.68 -2.91 -0.02 5.55 16 49 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -78.33 385.90 3.01 -75.32 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.30 Total: 20.54 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 5.00 Total: -33.29 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -2.08 Total: -70.39 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -2.17 Total: -41.60 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.96 Total: 49.42 kcal Total: -78.33 3.01 -75.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493614460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.362 kcal (2) G-P(sol) polarization free energy of solvation -78.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds