Wall clock time and date at job start Wed Apr 1 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99975 * 2 1 4 4 H 1.08998 * 109.46407 * 29.97223 * 3 2 1 5 5 C 1.53039 * 109.45944 * 270.00070 * 3 2 1 6 6 C 1.53189 * 109.31344 * 178.61325 * 5 3 2 7 7 N 1.46920 * 108.77895 * 54.63571 * 6 5 3 8 8 C 1.34775 * 120.63632 * 126.36610 * 7 6 5 9 9 O 1.21725 * 120.00399 * 174.90129 * 8 7 6 10 10 C 1.46254 * 119.99767 * 354.91106 * 8 7 6 11 11 C 1.35021 * 119.99820 * 185.16566 * 10 8 7 12 12 C 1.46966 * 119.99660 * 179.97438 * 11 10 8 13 13 C 1.40023 * 120.10163 * 359.72533 * 12 11 10 14 14 C 1.37605 * 119.89549 * 179.73908 * 13 12 11 15 15 C 1.39173 * 120.10011 * 0.50853 * 14 13 12 16 16 O 1.35569 * 119.89765 * 179.73594 * 15 14 13 17 17 C 1.34782 * 117.00218 * 185.58360 * 16 15 14 18 18 H 1.08006 * 120.00066 * 354.95319 * 17 16 15 19 19 C 1.38713 * 120.00253 * 174.94510 * 17 16 15 20 20 N 1.31514 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00255 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47343 * 90.00148 * 21 19 17 23 23 H 1.48502 * 109.47074 * 210.00233 * 21 19 17 24 24 H 1.48497 * 109.47086 * 330.00034 * 21 19 17 25 25 C 1.39180 * 120.20590 * 359.76945 * 15 14 13 26 26 C 1.37603 * 120.10115 * 359.97030 * 25 15 14 27 27 C 1.46937 * 118.73727 * 306.39223 * 7 6 5 28 28 C 1.53038 * 109.46529 * 149.93292 * 3 2 1 29 29 H 1.09007 * 109.49449 * 301.33517 * 28 3 2 30 30 C 1.53005 * 109.49796 * 61.39720 * 28 3 2 31 31 H 1.08992 * 109.47170 * 59.99937 * 1 2 3 32 32 H 1.09004 * 109.46833 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47112 * 299.99872 * 1 2 3 34 34 H 1.09007 * 109.49622 * 58.66143 * 5 3 2 35 35 H 1.09000 * 109.49641 * 298.56523 * 5 3 2 36 36 H 1.09003 * 109.58909 * 174.42086 * 6 5 3 37 37 H 1.09007 * 109.58735 * 294.84368 * 6 5 3 38 38 H 1.08003 * 120.00162 * 5.15455 * 10 8 7 39 39 H 1.07993 * 120.00558 * 359.97438 * 11 10 8 40 40 H 1.07997 * 120.05163 * 359.97438 * 13 12 11 41 41 H 1.07991 * 119.94784 * 180.23282 * 14 13 12 42 42 H 0.97001 * 119.99663 * 179.97438 * 20 19 17 43 43 H 1.07990 * 119.95078 * 179.97438 * 25 15 14 44 44 H 1.07998 * 120.05423 * 180.02562 * 26 25 15 45 45 H 1.09002 * 109.58386 * 293.82401 * 27 7 6 46 46 H 1.08994 * 109.58599 * 173.39776 * 27 7 6 47 47 H 1.08996 * 109.46670 * 60.00583 * 30 28 3 48 48 H 1.09000 * 109.47078 * 180.02562 * 30 28 3 49 49 H 1.08996 * 109.47086 * 300.00228 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 1.9994 0.5134 5 6 2.2175 1.7712 -1.4430 6 6 2.8085 3.1846 -1.4392 7 7 4.0307 3.1840 -0.6239 8 6 5.1927 3.6447 -1.1278 9 8 6.1758 3.7257 -0.4147 10 6 5.2723 4.0476 -2.5315 11 6 6.4592 4.4100 -3.0636 12 6 6.5392 4.8142 -4.4743 13 6 5.3870 4.8189 -5.2699 14 6 5.4659 5.2034 -6.5888 15 6 6.6902 5.5770 -7.1349 16 8 6.7641 5.9500 -8.4362 17 6 7.9931 6.1885 -8.9356 18 1 8.8552 6.1593 -8.2856 19 6 8.1508 6.4711 -10.2844 20 7 7.1012 6.5070 -11.0759 21 14 9.8542 6.8010 -10.9767 22 1 10.4611 5.5231 -11.4282 23 1 9.7487 7.7329 -12.1281 24 1 10.7070 7.4093 -9.9242 25 6 7.8392 5.5684 -6.3494 26 6 7.7690 5.1905 -5.0282 27 6 3.9623 2.6710 0.7513 28 6 3.3584 1.2635 0.7229 29 1 3.2130 0.9094 1.7436 30 6 4.3050 0.3157 -0.0165 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.2601 1.7786 -1.9640 35 1 2.9028 1.0917 -1.9497 36 1 3.0501 3.4824 -2.4596 37 1 2.0861 3.8816 -1.0143 38 1 4.3817 4.0551 -3.1425 39 1 7.3496 4.4027 -2.4526 40 1 4.4373 4.5249 -4.8481 41 1 4.5771 5.2109 -7.2022 42 1 7.2115 6.7050 -12.0191 43 1 8.7871 5.8587 -6.7775 44 1 8.6609 5.1845 -4.4193 45 1 3.3339 3.3261 1.3548 46 1 4.9651 2.6300 1.1763 47 1 4.4510 0.6708 -1.0365 48 1 5.2649 0.2857 0.4990 49 1 3.8734 -0.6849 -0.0383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493641012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:28 Heat of formation + Delta-G solvation = -65.559720 kcal Electronic energy + Delta-G solvation = -29266.410380 eV Core-core repulsion = 25159.739445 eV Total energy + Delta-G solvation = -4106.670935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.59925 -39.22936 -38.73394 -36.97328 -36.53559 -33.64917 -33.01249 -32.26942 -31.56231 -30.44558 -28.53313 -27.35913 -27.01058 -25.69315 -24.87962 -23.48044 -22.82516 -22.12121 -20.73865 -19.42535 -18.67762 -18.11899 -17.57498 -17.06511 -16.71704 -16.08278 -15.66092 -15.48754 -15.45131 -14.87374 -14.77872 -14.42648 -14.18558 -14.01080 -13.83385 -13.74138 -13.45561 -13.18419 -13.05193 -12.94611 -12.73907 -12.59773 -12.13765 -11.98181 -11.86001 -11.77708 -11.59507 -11.52595 -11.45451 -11.13624 -11.09004 -11.03809 -10.73130 -10.68560 -10.54785 -9.92435 -9.64797 -9.60073 -9.51351 -8.90815 -8.74071 -8.39652 -7.12583 -6.66284 -4.21083 1.05876 2.12128 2.53847 2.91903 3.03283 3.04179 3.08838 3.33165 3.58169 3.81374 4.28737 4.34768 4.49732 4.62081 4.66900 4.80524 4.87663 4.90824 4.93919 4.95389 5.01333 5.05291 5.13616 5.19608 5.30319 5.30726 5.41470 5.45471 5.49106 5.55281 5.56103 5.65569 5.67145 5.76670 5.84179 5.92301 5.99997 6.11144 6.16552 6.31751 6.45338 6.53504 6.59939 6.77886 6.82689 6.90558 7.11616 7.22282 7.26215 7.40101 7.62526 7.79089 8.28867 8.78553 9.45352 10.50309 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.001809 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.584148 B =15475.795608 C =16287.682671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.095 3.905 4 H 0.061 0.939 5 C -0.161 4.161 6 C 0.110 3.890 7 N -0.614 5.614 8 C 0.561 3.439 9 O -0.557 6.557 10 C -0.287 4.287 11 C 0.040 3.960 12 C -0.199 4.199 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.041 3.959 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.034 4.034 27 C 0.119 3.881 28 C -0.102 4.102 29 H 0.085 0.915 30 C -0.141 4.141 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 -8.946 19.797 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.037 3.963 4 H 0.079 0.921 5 C -0.199 4.199 6 C -0.014 4.014 7 N -0.348 5.348 8 C 0.355 3.645 9 O -0.438 6.438 10 C -0.307 4.307 11 C 0.020 3.980 12 C -0.200 4.200 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.261 4.261 26 C -0.053 4.053 27 C -0.004 4.004 28 C -0.121 4.121 29 H 0.103 0.897 30 C -0.198 4.198 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.698 -8.968 19.700 24.144 hybrid contribution 0.382 0.355 -0.436 0.680 sum -10.316 -8.613 19.263 23.488 Atomic orbital electron populations 1.22787 0.81272 1.02702 0.99888 1.87936 1.19386 1.27680 1.95032 1.22109 0.94337 0.84495 0.95333 0.92132 1.22496 1.02227 0.97460 0.97754 1.21751 0.86245 0.96227 0.97132 1.47891 1.09345 1.63667 1.13878 1.18385 0.81735 0.76176 0.88228 1.90764 1.35823 1.55824 1.61340 1.22519 0.99653 1.14273 0.94288 1.22300 0.97067 0.85897 0.92736 1.18460 0.94309 1.14068 0.93147 1.20853 0.96845 0.95867 0.92523 1.20142 0.96347 1.09640 0.95732 1.19610 0.93465 0.90464 0.85418 1.83902 1.32141 1.70801 1.19457 1.21477 0.82790 1.49262 0.93309 0.88529 1.25399 0.99984 0.96226 0.94879 1.70016 1.29622 1.43064 1.05741 0.85643 0.79710 0.78792 0.78966 1.19619 1.20049 1.18948 1.21104 0.99370 1.11003 0.94655 1.20992 0.95951 0.94083 0.94255 1.21571 1.02891 0.92639 0.83293 1.21596 0.94065 0.96166 1.00280 0.89662 1.21747 0.98285 0.99076 1.00694 0.94011 0.89712 0.94172 0.90604 0.89847 0.88494 0.91444 0.85650 0.85971 0.86568 0.86135 0.91591 0.85113 0.86804 0.91758 0.88363 0.92209 0.92787 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.35 9.73 -35.23 -0.34 -3.70 16 3 C 0.10 0.74 2.25 -26.69 -0.06 0.68 16 4 H 0.06 0.41 7.79 -51.93 -0.40 0.00 16 5 C -0.16 -1.25 5.35 -26.61 -0.14 -1.39 16 6 C 0.11 0.90 6.35 -3.72 -0.02 0.88 16 7 N -0.61 -6.66 2.41 -174.47 -0.42 -7.08 16 8 C 0.56 7.94 7.61 -13.04 -0.10 7.84 16 9 O -0.56 -9.68 15.68 5.17 0.08 -9.60 16 10 C -0.29 -3.92 8.74 -37.51 -0.33 -4.24 16 11 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 12 C -0.20 -3.36 5.87 -105.02 -0.62 -3.97 16 13 C -0.04 -0.72 9.40 -39.14 -0.37 -1.08 16 14 C -0.20 -3.94 9.97 -39.47 -0.39 -4.33 16 15 C 0.17 3.81 6.66 -38.88 -0.26 3.55 16 16 O -0.16 -4.37 9.74 0.74 0.01 -4.37 16 17 C -0.39 -10.39 9.48 30.91 0.29 -10.09 16 18 H 0.10 2.35 5.18 -52.48 -0.27 2.07 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.85 -23.73 13.67 55.48 0.76 -22.97 16 21 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.24 -4.98 9.14 -39.46 -0.36 -5.34 16 26 C -0.03 -0.61 9.79 -39.14 -0.38 -0.99 16 27 C 0.12 1.13 5.82 -3.71 -0.02 1.11 16 28 C -0.10 -0.86 2.94 -90.50 -0.27 -1.13 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 C -0.14 -1.38 8.57 37.16 0.32 -1.06 16 31 H 0.04 0.22 7.84 -51.93 -0.41 -0.19 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 34 H 0.08 0.49 7.85 -51.93 -0.41 0.09 16 35 H 0.08 0.78 6.34 -51.93 -0.33 0.45 16 36 H 0.10 0.78 5.30 -51.93 -0.28 0.50 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.13 1.47 3.85 -52.48 -0.20 1.27 16 39 H 0.12 1.85 7.53 -52.49 -0.40 1.46 16 40 H 0.12 1.57 6.16 -52.49 -0.32 1.25 16 41 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 1.09 7.03 -51.93 -0.37 0.73 16 47 H 0.06 0.66 5.98 -51.93 -0.31 0.35 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.61 7.72 -51.93 -0.40 0.21 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -30.98 393.22 -7.98 -38.96 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.90 Total: 5.48 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.06 Total: -17.08 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.34 Total: -30.05 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.25 Total: -17.66 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.98 -7.98 -38.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493641012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.604 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds