Wall clock time and date at job start Wed Apr 1 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99975 * 2 1 4 4 H 1.08998 * 109.46407 * 29.97223 * 3 2 1 5 5 C 1.53039 * 109.45944 * 270.00070 * 3 2 1 6 6 C 1.53189 * 109.31344 * 178.61325 * 5 3 2 7 7 N 1.46920 * 108.77895 * 54.63571 * 6 5 3 8 8 C 1.34775 * 120.63632 * 126.36610 * 7 6 5 9 9 O 1.21725 * 120.00399 * 174.90129 * 8 7 6 10 10 C 1.46254 * 119.99767 * 354.91106 * 8 7 6 11 11 C 1.35021 * 119.99820 * 185.16566 * 10 8 7 12 12 C 1.46966 * 119.99660 * 179.97438 * 11 10 8 13 13 C 1.40023 * 120.10163 * 359.72533 * 12 11 10 14 14 C 1.37605 * 119.89549 * 179.73908 * 13 12 11 15 15 C 1.39173 * 120.10011 * 0.50853 * 14 13 12 16 16 O 1.35569 * 119.89765 * 179.73594 * 15 14 13 17 17 C 1.34782 * 117.00218 * 185.58360 * 16 15 14 18 18 H 1.08006 * 120.00066 * 354.95319 * 17 16 15 19 19 C 1.38713 * 120.00253 * 174.94510 * 17 16 15 20 20 N 1.31514 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00255 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47343 * 90.00148 * 21 19 17 23 23 H 1.48502 * 109.47074 * 210.00233 * 21 19 17 24 24 H 1.48497 * 109.47086 * 330.00034 * 21 19 17 25 25 C 1.39180 * 120.20590 * 359.76945 * 15 14 13 26 26 C 1.37603 * 120.10115 * 359.97030 * 25 15 14 27 27 C 1.46937 * 118.73727 * 306.39223 * 7 6 5 28 28 C 1.53038 * 109.46529 * 149.93292 * 3 2 1 29 29 H 1.09007 * 109.49449 * 301.33517 * 28 3 2 30 30 C 1.53005 * 109.49796 * 61.39720 * 28 3 2 31 31 H 1.08992 * 109.47170 * 59.99937 * 1 2 3 32 32 H 1.09004 * 109.46833 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47112 * 299.99872 * 1 2 3 34 34 H 1.09007 * 109.49622 * 58.66143 * 5 3 2 35 35 H 1.09000 * 109.49641 * 298.56523 * 5 3 2 36 36 H 1.09003 * 109.58909 * 174.42086 * 6 5 3 37 37 H 1.09007 * 109.58735 * 294.84368 * 6 5 3 38 38 H 1.08003 * 120.00162 * 5.15455 * 10 8 7 39 39 H 1.07993 * 120.00558 * 359.97438 * 11 10 8 40 40 H 1.07997 * 120.05163 * 359.97438 * 13 12 11 41 41 H 1.07991 * 119.94784 * 180.23282 * 14 13 12 42 42 H 0.97001 * 119.99663 * 179.97438 * 20 19 17 43 43 H 1.07990 * 119.95078 * 179.97438 * 25 15 14 44 44 H 1.07998 * 120.05423 * 180.02562 * 26 25 15 45 45 H 1.09002 * 109.58386 * 293.82401 * 27 7 6 46 46 H 1.08994 * 109.58599 * 173.39776 * 27 7 6 47 47 H 1.08996 * 109.46670 * 60.00583 * 30 28 3 48 48 H 1.09000 * 109.47078 * 180.02562 * 30 28 3 49 49 H 1.08996 * 109.47086 * 300.00228 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 1.9994 0.5134 5 6 2.2175 1.7712 -1.4430 6 6 2.8085 3.1846 -1.4392 7 7 4.0307 3.1840 -0.6239 8 6 5.1927 3.6447 -1.1278 9 8 6.1758 3.7257 -0.4147 10 6 5.2723 4.0476 -2.5315 11 6 6.4592 4.4100 -3.0636 12 6 6.5392 4.8142 -4.4743 13 6 5.3870 4.8189 -5.2699 14 6 5.4659 5.2034 -6.5888 15 6 6.6902 5.5770 -7.1349 16 8 6.7641 5.9500 -8.4362 17 6 7.9931 6.1885 -8.9356 18 1 8.8552 6.1593 -8.2856 19 6 8.1508 6.4711 -10.2844 20 7 7.1012 6.5070 -11.0759 21 14 9.8542 6.8010 -10.9767 22 1 10.4611 5.5231 -11.4282 23 1 9.7487 7.7329 -12.1281 24 1 10.7070 7.4093 -9.9242 25 6 7.8392 5.5684 -6.3494 26 6 7.7690 5.1905 -5.0282 27 6 3.9623 2.6710 0.7513 28 6 3.3584 1.2635 0.7229 29 1 3.2130 0.9094 1.7436 30 6 4.3050 0.3157 -0.0165 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.2601 1.7786 -1.9640 35 1 2.9028 1.0917 -1.9497 36 1 3.0501 3.4824 -2.4596 37 1 2.0861 3.8816 -1.0143 38 1 4.3817 4.0551 -3.1425 39 1 7.3496 4.4027 -2.4526 40 1 4.4373 4.5249 -4.8481 41 1 4.5771 5.2109 -7.2022 42 1 7.2115 6.7050 -12.0191 43 1 8.7871 5.8587 -6.7775 44 1 8.6609 5.1845 -4.4193 45 1 3.3339 3.3261 1.3548 46 1 4.9651 2.6300 1.1763 47 1 4.4510 0.6708 -1.0365 48 1 5.2649 0.2857 0.4990 49 1 3.8734 -0.6849 -0.0383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493641012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:27 Heat of formation + Delta-G solvation = -83.123132 kcal Electronic energy + Delta-G solvation = -29267.171987 eV Core-core repulsion = 25159.739445 eV Total energy + Delta-G solvation = -4107.432542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.48174 -40.81964 -39.62958 -38.49533 -37.38884 -34.85541 -34.31094 -33.77310 -32.28548 -31.96845 -29.89498 -28.04815 -27.83160 -27.39196 -25.71436 -24.48063 -23.83233 -23.57153 -22.01035 -20.51369 -19.87167 -19.36662 -18.82998 -18.60434 -17.35820 -17.03541 -16.56462 -16.47607 -16.30188 -16.21095 -16.03860 -15.79694 -15.61316 -15.29267 -14.97038 -14.77072 -14.65079 -14.41721 -14.09249 -13.89453 -13.74337 -13.58314 -13.42601 -13.30525 -13.10938 -12.72889 -12.70688 -12.60619 -12.51442 -12.22745 -12.16644 -12.12336 -12.08496 -11.74657 -11.36688 -11.21431 -11.11796 -10.87235 -10.57428 -10.38549 -9.89250 -9.66894 -8.67604 -8.52220 -6.18171 -0.25182 0.58525 1.13068 1.35907 1.45959 1.52720 2.02749 2.15251 2.33905 2.82631 2.87267 3.17645 3.42193 3.52555 3.69397 3.78485 3.92409 3.97992 4.03973 4.09221 4.21334 4.23293 4.28543 4.38122 4.46264 4.48659 4.53936 4.58404 4.63610 4.66940 4.74046 4.78579 4.81026 4.89721 4.92866 4.94786 5.03377 5.06399 5.10817 5.19623 5.20669 5.25690 5.34175 5.40459 5.55212 5.62806 5.64927 5.81012 5.97415 6.10188 6.31508 6.40946 6.92258 7.20147 7.69252 8.69771 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.001809 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.584148 B =15475.795608 C =16287.682671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.096 3.904 4 H 0.080 0.920 5 C -0.157 4.157 6 C 0.104 3.896 7 N -0.606 5.606 8 C 0.552 3.448 9 O -0.593 6.593 10 C -0.250 4.250 11 C 0.017 3.983 12 C -0.170 4.170 13 C -0.037 4.037 14 C -0.206 4.206 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.416 4.416 18 H 0.105 0.895 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.249 4.249 26 C -0.040 4.040 27 C 0.118 3.882 28 C -0.098 4.098 29 H 0.096 0.904 30 C -0.137 4.137 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.153 0.847 39 H 0.123 0.877 40 H 0.159 0.841 41 H 0.124 0.876 42 H 0.275 0.725 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.683 -9.711 23.044 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.038 3.962 4 H 0.098 0.902 5 C -0.195 4.195 6 C -0.018 4.018 7 N -0.337 5.337 8 C 0.345 3.655 9 O -0.477 6.477 10 C -0.271 4.271 11 C -0.003 4.003 12 C -0.171 4.171 13 C -0.054 4.054 14 C -0.225 4.225 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.268 4.268 26 C -0.058 4.058 27 C -0.005 4.005 28 C -0.117 4.117 29 H 0.115 0.885 30 C -0.194 4.194 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.170 0.830 39 H 0.141 0.859 40 H 0.177 0.823 41 H 0.142 0.858 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.332 -9.765 23.027 27.887 hybrid contribution 0.598 0.344 -0.808 1.062 sum -11.734 -9.422 22.219 26.835 Atomic orbital electron populations 1.22948 0.79855 1.03511 1.00846 1.87910 1.21011 1.28203 1.95153 1.22119 0.94021 0.84739 0.95324 0.90248 1.22453 1.02615 0.96598 0.97859 1.22022 0.85434 0.97192 0.97172 1.47988 1.09240 1.61838 1.14655 1.18510 0.82246 0.76516 0.88231 1.90762 1.37364 1.57413 1.62130 1.22853 0.99958 1.09965 0.94290 1.22179 0.98071 0.88323 0.91691 1.18771 0.93889 1.10570 0.93899 1.21255 0.98665 0.94410 0.91103 1.20418 0.95534 1.09424 0.97110 1.20189 0.95429 0.91745 0.84846 1.83884 1.32429 1.74601 1.21483 1.21888 0.83338 1.49925 0.94049 0.87744 1.26602 1.04264 0.95936 0.94942 1.70149 1.32143 1.46635 1.06060 0.84591 0.74521 0.78879 0.78302 1.18831 1.19542 1.17615 1.21200 0.98596 1.11258 0.95764 1.21312 0.97753 0.93467 0.93299 1.21671 1.02442 0.93718 0.82656 1.21558 0.94235 0.94970 1.00905 0.88539 1.21691 0.98371 0.99406 0.99943 0.93168 0.89159 0.93020 0.88805 0.91656 0.87973 0.88884 0.83007 0.85893 0.82348 0.85806 0.91596 0.85786 0.83901 0.89395 0.90335 0.93598 0.93607 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -5.91 9.73 -148.98 -1.45 -7.36 16 3 C 0.10 1.15 2.25 30.62 0.07 1.22 16 4 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 5 C -0.16 -1.83 5.35 30.67 0.16 -1.67 16 6 C 0.10 1.22 6.35 86.36 0.55 1.77 16 7 N -0.61 -11.01 2.41 -824.09 -1.99 -13.00 16 8 C 0.55 13.94 7.61 86.33 0.66 14.60 16 9 O -0.59 -19.53 15.68 -4.43 -0.07 -19.60 16 10 C -0.25 -5.82 8.74 23.61 0.21 -5.62 16 11 C 0.02 0.47 9.45 23.82 0.23 0.69 16 12 C -0.17 -5.28 5.87 -20.12 -0.12 -5.40 16 13 C -0.04 -1.13 9.40 22.55 0.21 -0.91 16 14 C -0.21 -8.08 9.97 22.34 0.22 -7.86 16 15 C 0.13 6.15 6.66 22.72 0.15 6.30 16 16 O -0.22 -12.61 9.74 -20.27 -0.20 -12.81 16 17 C -0.42 -23.35 9.48 67.93 0.64 -22.70 16 18 H 0.11 5.36 5.18 -2.91 -0.02 5.35 16 19 C -0.02 -1.02 5.49 84.85 0.47 -0.56 16 20 N -0.91 -54.16 13.67 21.62 0.30 -53.87 16 21 Si 1.02 41.44 29.55 68.60 2.03 43.47 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 25 C -0.25 -10.41 9.14 22.35 0.20 -10.21 16 26 C -0.04 -1.37 9.79 22.55 0.22 -1.15 16 27 C 0.12 1.89 5.82 86.36 0.50 2.39 16 28 C -0.10 -1.38 2.94 -10.72 -0.03 -1.41 16 29 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 30 C -0.14 -2.49 8.57 71.98 0.62 -1.87 16 31 H 0.05 0.35 7.84 -2.39 -0.02 0.33 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.33 8.09 -2.38 -0.02 0.31 16 34 H 0.09 0.80 7.85 -2.38 -0.02 0.78 16 35 H 0.06 1.03 6.34 -2.39 -0.02 1.02 16 36 H 0.10 1.09 5.30 -2.39 -0.01 1.08 16 37 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.15 2.69 3.85 -2.91 -0.01 2.68 16 39 H 0.12 3.40 7.53 -2.91 -0.02 3.38 16 40 H 0.16 3.47 6.16 -2.91 -0.02 3.45 16 41 H 0.12 4.69 8.06 -2.92 -0.02 4.67 16 42 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.12 5.26 5.62 -2.92 -0.02 5.24 16 44 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 1.62 7.03 -2.39 -0.02 1.60 16 47 H 0.04 0.95 5.98 -2.39 -0.01 0.93 16 48 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 1.10 7.72 -2.39 -0.02 1.08 16 Total: -1.00 -73.15 393.22 5.78 -67.37 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.97 Total: 26.75 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 6.19 Total: -30.96 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -1.69 Total: -66.86 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.72 Total: -39.77 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -73.15 5.78 -67.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493641012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.754 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds