Wall clock time and date at job start Wed Apr 1 2020 03:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.47114 * 2 1 4 4 O 1.42905 * 109.47127 * 240.00639 * 2 1 3 5 5 C 1.35908 * 116.99808 * 85.08141 * 4 2 1 6 6 C 1.38745 * 120.09266 * 354.78033 * 5 4 2 7 7 C 1.38004 * 119.87752 * 179.97438 * 6 5 4 8 8 C 1.38550 * 120.28764 * 0.02878 * 7 6 5 9 9 C 1.38254 * 119.94017 * 359.97438 * 8 7 6 10 10 C 1.38416 * 119.90162 * 359.74482 * 9 8 7 11 11 C 1.51382 * 109.75758 * 180.02562 * 9 8 7 12 12 C 1.54337 * 105.16928 * 342.80422 * 11 9 8 13 13 C 1.51395 * 130.31872 * 179.97438 * 8 7 6 14 14 C 1.50700 * 109.47572 * 120.00294 * 2 1 3 15 15 O 1.21279 * 119.99515 * 110.21320 * 14 2 1 16 16 N 1.34770 * 120.00126 * 290.21736 * 14 2 1 17 17 C 1.47025 * 125.64853 * 355.28779 * 16 14 2 18 18 C 1.54324 * 107.26972 * 178.98382 * 17 16 14 19 19 C 1.55156 * 102.94581 * 337.80860 * 18 17 16 20 20 O 1.42898 * 111.00168 * 277.42789 * 19 18 17 21 21 C 1.50702 * 111.00315 * 153.60986 * 19 18 17 22 22 H 1.07999 * 120.00006 * 244.57452 * 21 19 18 23 23 C 1.37880 * 119.99528 * 64.58569 * 21 19 18 24 24 N 1.31515 * 120.00279 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99387 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47377 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46565 * 120.00055 * 25 23 21 28 28 H 1.48501 * 109.47279 * 239.99727 * 25 23 21 29 29 C 1.47420 * 125.65100 * 175.33990 * 16 14 2 30 30 H 1.09002 * 109.46903 * 293.25729 * 1 2 3 31 31 H 1.08995 * 109.47421 * 53.25345 * 1 2 3 32 32 H 1.08999 * 109.47177 * 173.25576 * 1 2 3 33 33 H 1.08002 * 120.06301 * 359.95933 * 6 5 4 34 34 H 1.08000 * 119.85829 * 180.02562 * 7 6 5 35 35 H 1.08002 * 119.91335 * 180.25281 * 10 9 8 36 36 H 1.08998 * 110.30355 * 223.87900 * 11 9 8 37 37 H 1.08998 * 110.38070 * 101.76949 * 11 9 8 38 38 H 1.09002 * 110.82120 * 268.13921 * 12 11 9 39 39 H 1.09004 * 110.99463 * 144.67000 * 12 11 9 40 40 H 1.08997 * 110.30359 * 316.10557 * 13 8 7 41 41 H 1.09004 * 110.29745 * 78.25448 * 13 8 7 42 42 H 1.08999 * 109.88170 * 59.57088 * 17 16 14 43 43 H 1.08998 * 109.88116 * 298.40624 * 17 16 14 44 44 H 1.08999 * 110.71891 * 219.44208 * 18 17 16 45 45 H 1.09002 * 110.86965 * 96.24469 * 18 17 16 46 46 H 0.96697 * 113.99979 * 298.54430 * 20 19 18 47 47 H 0.96999 * 119.99362 * 179.97438 * 24 23 21 48 48 H 1.09003 * 110.36558 * 85.23980 * 29 16 14 49 49 H 1.09003 * 110.36903 * 322.92250 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.1141 0.0633 -2.3038 6 6 1.6677 1.3768 -2.3264 7 6 1.7798 2.1211 -3.4831 8 6 2.3357 1.5623 -4.6225 9 6 2.7811 0.2537 -4.6024 10 6 2.6753 -0.4935 -3.4421 11 6 3.3419 -0.1169 -5.9589 12 6 2.7951 0.9527 -6.9278 13 6 2.5663 2.1600 -5.9943 14 6 2.0324 -0.7104 1.2304 15 8 2.5767 -1.7894 1.1277 16 7 1.8768 -0.1469 2.4447 17 6 1.3270 1.1917 2.7040 18 6 1.3175 1.3947 4.2338 19 6 1.3351 -0.0584 4.7773 20 8 0.0197 -0.6167 4.7894 21 6 1.9553 -0.1143 6.1497 22 1 2.8789 -0.6526 6.3034 23 6 1.3434 0.5215 7.2091 24 7 0.2188 1.1772 7.0218 25 14 2.1118 0.4516 8.9103 26 1 3.3656 -0.3422 8.8549 27 1 2.4187 1.8294 9.3717 28 1 1.1622 -0.1873 9.8565 29 6 2.2308 -0.7702 3.7329 30 1 -0.3633 0.4058 0.9442 31 1 -0.3634 0.6148 -0.8234 32 1 -0.3633 -1.0205 -0.1207 33 1 1.2331 1.8159 -1.4405 34 1 1.4326 3.1437 -3.5002 35 1 3.0270 -1.5145 -3.4250 36 1 2.9949 -1.1072 -6.2538 37 1 4.4313 -0.0886 -5.9399 38 1 1.8564 0.6264 -7.3755 39 1 3.5275 1.1921 -7.6988 40 1 1.6900 2.7243 -6.3132 41 1 3.4473 2.8019 -5.9838 42 1 0.3107 1.2568 2.3152 43 1 1.9552 1.9480 2.2335 44 1 0.4118 1.9132 4.5484 45 1 2.2043 1.9388 4.5588 46 1 -0.6038 -0.1420 5.3560 47 1 -0.2118 1.6242 7.7673 48 1 3.2838 -0.6024 3.9589 49 1 2.0122 -1.8379 3.7106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:19 Heat of formation + Delta-G solvation = -96.140295 kcal Electronic energy + Delta-G solvation = -30236.900633 eV Core-core repulsion = 26128.903625 eV Total energy + Delta-G solvation = -4107.997009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.82392 -39.78118 -38.57331 -37.13928 -34.98586 -34.43984 -32.37273 -32.24399 -31.15345 -29.67940 -28.71094 -28.33368 -27.31434 -25.56150 -24.19420 -23.05385 -22.31557 -21.06037 -20.91670 -19.80617 -18.90833 -18.07019 -17.25872 -16.83890 -16.04761 -15.84694 -15.74579 -15.44614 -15.04115 -15.01444 -14.86542 -14.44905 -14.21110 -13.62546 -13.54251 -13.21663 -13.16720 -12.94556 -12.84551 -12.52306 -12.38646 -12.20798 -12.05732 -11.85545 -11.73148 -11.60917 -11.47398 -11.43972 -11.33909 -11.30081 -10.94243 -10.76391 -10.68741 -10.66152 -10.48755 -10.09584 -9.51793 -9.36359 -8.95808 -8.73668 -8.29124 -8.12403 -8.10470 -6.34916 -4.42056 1.15336 1.27927 2.68121 2.88389 3.15460 3.24998 3.29641 3.55494 3.68951 4.22237 4.24391 4.31225 4.53855 4.68611 4.70937 4.78162 4.85075 4.91050 4.93702 5.04734 5.12969 5.22962 5.39141 5.40408 5.42582 5.48830 5.50532 5.52642 5.61267 5.63466 5.69075 5.77994 5.84133 5.87629 5.98104 6.06058 6.14843 6.22192 6.24201 6.34713 6.47245 6.54910 6.60479 6.79164 6.85186 7.20669 7.24583 7.33368 7.67975 7.93059 7.99142 8.49011 8.60897 9.25707 9.35856 10.73109 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.002041 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.845424 B =13716.759647 C =13994.929552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.094 0.906 4 O -0.284 6.284 5 C 0.137 3.863 6 C -0.211 4.211 7 C -0.066 4.066 8 C -0.142 4.142 9 C -0.060 4.060 10 C -0.140 4.140 11 C -0.082 4.082 12 C -0.120 4.120 13 C -0.076 4.076 14 C 0.529 3.471 15 O -0.531 6.531 16 N -0.603 5.603 17 C 0.091 3.909 18 C -0.138 4.138 19 C 0.249 3.751 20 O -0.582 6.582 21 C -0.534 4.534 22 H 0.066 0.934 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.903 3.097 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.122 3.878 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.383 0.617 47 H 0.268 0.732 48 H 0.074 0.926 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 5.665 -22.532 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.014 3.986 3 H 0.111 0.889 4 O -0.197 6.197 5 C 0.092 3.908 6 C -0.230 4.230 7 C -0.084 4.084 8 C -0.142 4.142 9 C -0.060 4.060 10 C -0.158 4.158 11 C -0.119 4.119 12 C -0.158 4.158 13 C -0.113 4.113 14 C 0.315 3.685 15 O -0.408 6.408 16 N -0.337 5.337 17 C -0.031 4.031 18 C -0.177 4.177 19 C 0.208 3.792 20 O -0.391 6.391 21 C -0.572 4.572 22 H 0.084 0.916 23 C -0.130 4.130 24 N -0.536 5.536 25 Si 0.731 3.269 26 H -0.195 1.195 27 H -0.208 1.208 28 H -0.207 1.207 29 C 0.001 3.999 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.233 0.767 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.716 4.522 -22.947 23.451 hybrid contribution -0.066 0.820 1.576 1.778 sum 1.650 5.342 -21.371 22.090 Atomic orbital electron populations 1.22370 0.92503 1.04493 1.04081 1.22181 0.95935 0.96699 0.83831 0.88879 1.86213 1.80819 1.36914 1.15730 1.18875 0.95000 0.90234 0.86728 1.21218 1.07493 0.94323 0.99932 1.20366 0.97482 0.99302 0.91215 1.20466 1.02623 0.95335 0.95819 1.20297 0.97141 0.94145 0.94394 1.19789 1.04415 1.01265 0.90376 1.21056 1.00608 0.99697 0.90540 1.22286 1.01456 0.94859 0.97184 1.20955 1.01840 0.97688 0.90829 1.19520 0.80084 0.85870 0.83048 1.90700 1.42978 1.21443 1.85677 1.48483 1.61687 1.17925 1.05561 1.22360 0.97460 0.82987 1.00319 1.23211 1.03285 1.01736 0.89437 1.19610 0.81348 0.86677 0.91540 1.86131 1.22389 1.59250 1.71366 1.21482 1.09339 1.33706 0.92714 0.91574 1.24982 0.94705 0.93773 0.99511 1.69655 1.17483 1.34038 1.32399 0.86351 0.79466 0.77869 0.83231 1.19543 1.20834 1.20747 1.22431 0.98775 0.98384 0.80294 0.89445 0.90966 0.90577 0.84984 0.85984 0.85265 0.90508 0.89975 0.90970 0.90572 0.90988 0.90559 0.91905 0.92719 0.89527 0.91152 0.76677 0.92201 0.90819 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 9.14 37.16 0.34 -1.96 16 2 C 0.07 1.11 2.03 -27.89 -0.06 1.05 16 3 H 0.09 1.20 6.12 -51.92 -0.32 0.89 16 4 O -0.28 -4.64 9.35 -39.17 -0.37 -5.01 16 5 C 0.14 1.90 6.60 -39.26 -0.26 1.64 16 6 C -0.21 -2.46 8.32 -39.48 -0.33 -2.79 16 7 C -0.07 -0.67 10.03 -39.55 -0.40 -1.07 16 8 C -0.14 -1.44 6.14 -104.16 -0.64 -2.08 16 9 C -0.06 -0.64 6.13 -104.22 -0.64 -1.28 16 10 C -0.14 -1.78 9.98 -39.39 -0.39 -2.17 16 11 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 12 C -0.12 -0.76 7.08 -25.34 -0.18 -0.94 16 13 C -0.08 -0.55 6.77 -26.85 -0.18 -0.74 16 14 C 0.53 10.24 7.17 -10.99 -0.08 10.17 16 15 O -0.53 -12.31 16.82 -14.16 -0.24 -12.55 16 16 N -0.60 -11.64 3.33 -170.52 -0.57 -12.20 16 17 C 0.09 1.54 6.16 -3.06 -0.02 1.52 16 18 C -0.14 -2.79 5.51 -24.90 -0.14 -2.93 16 19 C 0.25 5.78 0.87 -89.62 -0.08 5.70 16 20 O -0.58 -14.30 13.15 -35.23 -0.46 -14.77 16 21 C -0.53 -13.53 8.26 -34.44 -0.28 -13.82 16 22 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 23 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 24 N -0.90 -22.34 10.78 55.43 0.60 -21.75 16 25 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 C 0.12 2.68 6.06 -2.53 -0.02 2.66 16 30 H 0.09 1.13 5.62 -51.93 -0.29 0.83 16 31 H 0.07 0.77 6.88 -51.93 -0.36 0.41 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.13 1.35 5.36 -52.49 -0.28 1.07 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.96 5.90 -51.93 -0.31 0.65 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.82 7.68 -51.93 -0.40 1.42 16 45 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 46 H 0.38 9.39 7.32 45.56 0.33 9.72 16 47 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 48 H 0.07 1.57 8.03 -51.93 -0.42 1.16 16 49 H 0.07 1.69 8.08 -51.93 -0.42 1.27 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -29.57 388.98 -10.46 -40.04 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.64 Total: 11.70 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -3.62 Total: -6.11 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.03 Total: -33.95 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.07 Total: -32.32 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.57 -10.46 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.103 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds