Wall clock time and date at job start Wed Apr 1 2020 03:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.47114 * 2 1 4 4 O 1.42905 * 109.47127 * 240.00639 * 2 1 3 5 5 C 1.35908 * 116.99808 * 85.08141 * 4 2 1 6 6 C 1.38745 * 120.09266 * 354.78033 * 5 4 2 7 7 C 1.38004 * 119.87752 * 179.97438 * 6 5 4 8 8 C 1.38550 * 120.28764 * 0.02878 * 7 6 5 9 9 C 1.38254 * 119.94017 * 359.97438 * 8 7 6 10 10 C 1.38416 * 119.90162 * 359.74482 * 9 8 7 11 11 C 1.51382 * 109.75758 * 180.02562 * 9 8 7 12 12 C 1.54337 * 105.16928 * 342.80422 * 11 9 8 13 13 C 1.51395 * 130.31872 * 179.97438 * 8 7 6 14 14 C 1.50700 * 109.47572 * 120.00294 * 2 1 3 15 15 O 1.21279 * 119.99515 * 110.21320 * 14 2 1 16 16 N 1.34770 * 120.00126 * 290.21736 * 14 2 1 17 17 C 1.47025 * 125.64853 * 355.28779 * 16 14 2 18 18 C 1.54324 * 107.26972 * 178.98382 * 17 16 14 19 19 C 1.55156 * 102.94581 * 337.80860 * 18 17 16 20 20 O 1.42898 * 111.00168 * 277.42789 * 19 18 17 21 21 C 1.50702 * 111.00315 * 153.60986 * 19 18 17 22 22 H 1.07999 * 120.00006 * 244.57452 * 21 19 18 23 23 C 1.37880 * 119.99528 * 64.58569 * 21 19 18 24 24 N 1.31515 * 120.00279 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99387 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47377 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46565 * 120.00055 * 25 23 21 28 28 H 1.48501 * 109.47279 * 239.99727 * 25 23 21 29 29 C 1.47420 * 125.65100 * 175.33990 * 16 14 2 30 30 H 1.09002 * 109.46903 * 293.25729 * 1 2 3 31 31 H 1.08995 * 109.47421 * 53.25345 * 1 2 3 32 32 H 1.08999 * 109.47177 * 173.25576 * 1 2 3 33 33 H 1.08002 * 120.06301 * 359.95933 * 6 5 4 34 34 H 1.08000 * 119.85829 * 180.02562 * 7 6 5 35 35 H 1.08002 * 119.91335 * 180.25281 * 10 9 8 36 36 H 1.08998 * 110.30355 * 223.87900 * 11 9 8 37 37 H 1.08998 * 110.38070 * 101.76949 * 11 9 8 38 38 H 1.09002 * 110.82120 * 268.13921 * 12 11 9 39 39 H 1.09004 * 110.99463 * 144.67000 * 12 11 9 40 40 H 1.08997 * 110.30359 * 316.10557 * 13 8 7 41 41 H 1.09004 * 110.29745 * 78.25448 * 13 8 7 42 42 H 1.08999 * 109.88170 * 59.57088 * 17 16 14 43 43 H 1.08998 * 109.88116 * 298.40624 * 17 16 14 44 44 H 1.08999 * 110.71891 * 219.44208 * 18 17 16 45 45 H 1.09002 * 110.86965 * 96.24469 * 18 17 16 46 46 H 0.96697 * 113.99979 * 298.54430 * 20 19 18 47 47 H 0.96999 * 119.99362 * 179.97438 * 24 23 21 48 48 H 1.09003 * 110.36558 * 85.23980 * 29 16 14 49 49 H 1.09003 * 110.36903 * 322.92250 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.1141 0.0633 -2.3038 6 6 1.6677 1.3768 -2.3264 7 6 1.7798 2.1211 -3.4831 8 6 2.3357 1.5623 -4.6225 9 6 2.7811 0.2537 -4.6024 10 6 2.6753 -0.4935 -3.4421 11 6 3.3419 -0.1169 -5.9589 12 6 2.7951 0.9527 -6.9278 13 6 2.5663 2.1600 -5.9943 14 6 2.0324 -0.7104 1.2304 15 8 2.5767 -1.7894 1.1277 16 7 1.8768 -0.1469 2.4447 17 6 1.3270 1.1917 2.7040 18 6 1.3175 1.3947 4.2338 19 6 1.3351 -0.0584 4.7773 20 8 0.0197 -0.6167 4.7894 21 6 1.9553 -0.1143 6.1497 22 1 2.8789 -0.6526 6.3034 23 6 1.3434 0.5215 7.2091 24 7 0.2188 1.1772 7.0218 25 14 2.1118 0.4516 8.9103 26 1 3.3656 -0.3422 8.8549 27 1 2.4187 1.8294 9.3717 28 1 1.1622 -0.1873 9.8565 29 6 2.2308 -0.7702 3.7329 30 1 -0.3633 0.4058 0.9442 31 1 -0.3634 0.6148 -0.8234 32 1 -0.3633 -1.0205 -0.1207 33 1 1.2331 1.8159 -1.4405 34 1 1.4326 3.1437 -3.5002 35 1 3.0270 -1.5145 -3.4250 36 1 2.9949 -1.1072 -6.2538 37 1 4.4313 -0.0886 -5.9399 38 1 1.8564 0.6264 -7.3755 39 1 3.5275 1.1921 -7.6988 40 1 1.6900 2.7243 -6.3132 41 1 3.4473 2.8019 -5.9838 42 1 0.3107 1.2568 2.3152 43 1 1.9552 1.9480 2.2335 44 1 0.4118 1.9132 4.5484 45 1 2.2043 1.9388 4.5588 46 1 -0.6038 -0.1420 5.3560 47 1 -0.2118 1.6242 7.7673 48 1 3.2838 -0.6024 3.9589 49 1 2.0122 -1.8379 3.7106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:18 Heat of formation + Delta-G solvation = -112.850483 kcal Electronic energy + Delta-G solvation = -30237.625242 eV Core-core repulsion = 26128.903625 eV Total energy + Delta-G solvation = -4108.721617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.89217 -41.01597 -39.73968 -38.74320 -36.19256 -35.76714 -34.18571 -33.50012 -32.10324 -31.23318 -29.98500 -29.45751 -28.01815 -27.27200 -25.55595 -23.90550 -23.67146 -22.06329 -21.66859 -21.44097 -20.30123 -19.27863 -18.94305 -18.17318 -17.22553 -17.02196 -16.87087 -16.67537 -16.54501 -16.22108 -16.07500 -15.69774 -15.45068 -15.05958 -14.85303 -14.45065 -14.23498 -14.00804 -13.78282 -13.75709 -13.69350 -13.47452 -13.33335 -13.22689 -13.05761 -12.84133 -12.78652 -12.58573 -12.48706 -12.33274 -12.27714 -12.22993 -11.99482 -11.83858 -11.59652 -11.41967 -11.32293 -10.90825 -10.63451 -10.15961 -9.78762 -9.68739 -8.99823 -8.25551 -6.38890 0.32711 0.41394 1.38057 1.40390 1.42123 1.46375 1.55371 2.36716 2.44840 2.71937 2.99481 3.26380 3.55485 3.63040 3.67934 3.77071 3.79592 3.91778 3.96882 4.12696 4.21881 4.22797 4.29954 4.36865 4.40942 4.42229 4.52718 4.54973 4.60727 4.69309 4.74840 4.83331 4.88517 4.98069 5.03201 5.06316 5.08860 5.15288 5.18883 5.24604 5.33092 5.37495 5.42984 5.43650 5.53021 5.68045 5.76674 5.79177 6.06859 6.33163 6.48032 6.64179 6.96514 7.31624 7.42452 8.81038 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.002041 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.845424 B =13716.759647 C =13994.929552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.083 3.917 3 H 0.122 0.878 4 O -0.314 6.314 5 C 0.108 3.892 6 C -0.213 4.213 7 C -0.068 4.068 8 C -0.145 4.145 9 C -0.070 4.070 10 C -0.162 4.162 11 C -0.085 4.085 12 C -0.115 4.115 13 C -0.076 4.076 14 C 0.521 3.479 15 O -0.581 6.581 16 N -0.602 5.602 17 C 0.095 3.905 18 C -0.128 4.128 19 C 0.236 3.764 20 O -0.592 6.592 21 C -0.561 4.561 22 H 0.053 0.947 23 C 0.039 3.961 24 N -0.905 5.905 25 Si 0.958 3.042 26 H -0.276 1.276 27 H -0.274 1.274 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.380 0.620 47 H 0.272 0.728 48 H 0.073 0.927 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 8.519 -24.569 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.139 0.861 4 O -0.228 6.228 5 C 0.063 3.937 6 C -0.231 4.231 7 C -0.086 4.086 8 C -0.145 4.145 9 C -0.070 4.070 10 C -0.181 4.181 11 C -0.122 4.122 12 C -0.153 4.153 13 C -0.113 4.113 14 C 0.310 3.690 15 O -0.461 6.461 16 N -0.335 5.335 17 C -0.026 4.026 18 C -0.166 4.166 19 C 0.196 3.804 20 O -0.401 6.401 21 C -0.599 4.599 22 H 0.071 0.929 23 C -0.163 4.163 24 N -0.544 5.544 25 Si 0.784 3.216 26 H -0.201 1.201 27 H -0.200 1.200 28 H -0.207 1.207 29 C 0.003 3.997 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.335 7.409 -25.001 26.110 hybrid contribution 0.074 -0.099 2.160 2.164 sum 1.408 7.310 -22.840 24.023 Atomic orbital electron populations 1.22349 0.90743 1.04176 1.05417 1.22137 0.96945 0.96852 0.81673 0.86073 1.86163 1.81683 1.38328 1.16639 1.19122 0.97011 0.91395 0.86123 1.21406 1.07191 0.93350 1.01158 1.20731 0.96794 1.00422 0.90654 1.20963 1.01227 0.95105 0.97179 1.20675 0.96906 0.94559 0.94833 1.19952 1.05369 1.01380 0.91353 1.21177 1.01022 1.00627 0.89364 1.22320 1.02199 0.93689 0.97044 1.21055 1.02953 0.98159 0.89085 1.20407 0.79049 0.85474 0.84102 1.90666 1.45188 1.23777 1.86458 1.48511 1.61530 1.18670 1.04784 1.22490 0.99660 0.82347 0.98123 1.22990 1.02665 0.99208 0.91781 1.19747 0.80639 0.88785 0.91218 1.86120 1.22955 1.59822 1.71237 1.21687 1.09444 1.34381 0.94403 0.92857 1.25553 0.95175 0.93468 1.02090 1.69702 1.17711 1.33805 1.33190 0.85510 0.78414 0.77966 0.79704 1.20057 1.19958 1.20717 1.22202 0.98612 0.97000 0.81883 0.89066 0.88003 0.92249 0.83415 0.83195 0.86314 0.90143 0.89267 0.90562 0.88520 0.89544 0.89454 0.89569 0.88912 0.90216 0.91606 0.76973 0.91866 0.90870 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.14 71.98 0.66 -3.45 16 2 C 0.08 2.43 2.03 29.85 0.06 2.49 16 3 H 0.12 2.80 6.12 -2.38 -0.01 2.79 16 4 O -0.31 -10.39 9.35 -73.66 -0.69 -11.08 16 5 C 0.11 2.95 6.60 22.48 0.15 3.10 16 6 C -0.21 -4.49 8.32 22.34 0.19 -4.30 16 7 C -0.07 -1.20 10.03 22.29 0.22 -0.98 16 8 C -0.14 -2.56 6.14 -19.56 -0.12 -2.68 16 9 C -0.07 -1.42 6.13 -19.60 -0.12 -1.54 16 10 C -0.16 -4.18 9.98 22.40 0.22 -3.96 16 11 C -0.09 -1.17 6.77 30.52 0.21 -0.97 16 12 C -0.12 -1.09 7.08 31.50 0.22 -0.87 16 13 C -0.08 -0.84 6.77 30.52 0.21 -0.63 16 14 C 0.52 20.38 7.17 87.66 0.63 21.01 16 15 O -0.58 -28.10 16.82 15.83 0.27 -27.84 16 16 N -0.60 -23.12 3.33 -811.81 -2.70 -25.82 16 17 C 0.10 3.00 6.16 86.73 0.53 3.53 16 18 C -0.13 -5.06 5.51 31.78 0.18 -4.89 16 19 C 0.24 11.14 0.87 -10.15 -0.01 11.14 16 20 O -0.59 -29.59 13.15 -148.98 -1.96 -31.55 16 21 C -0.56 -28.95 8.26 25.60 0.21 -28.74 16 22 H 0.05 2.80 7.78 -2.91 -0.02 2.78 16 23 C 0.04 1.93 5.30 84.66 0.45 2.38 16 24 N -0.90 -44.80 10.78 21.45 0.23 -44.57 16 25 Si 0.96 40.58 29.54 68.60 2.03 42.60 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 29 C 0.13 5.67 6.06 86.86 0.53 6.20 16 30 H 0.09 2.12 5.62 -2.39 -0.01 2.11 16 31 H 0.10 1.86 6.88 -2.39 -0.02 1.84 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.15 2.51 5.36 -2.91 -0.02 2.50 16 34 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 2.36 5.90 -2.39 -0.01 2.35 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.08 3.27 7.68 -2.39 -0.02 3.25 16 45 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16 46 H 0.38 18.90 7.32 -74.06 -0.54 18.36 16 47 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 48 H 0.07 3.25 8.03 -2.39 -0.02 3.23 16 49 H 0.05 2.26 8.08 -2.39 -0.02 2.24 16 Total: -1.00 -66.55 388.98 2.02 -64.53 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.43 Total: 36.86 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 4.41 Total: -3.14 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -2.47 Total: -70.39 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -2.38 Total: -70.47 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Total: -66.55 2.02 -64.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.317 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds