Wall clock time and date at job start Wed Apr 1 2020 04:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29104 * 126.00540 * 2 1 4 4 N 1.29017 * 110.25621 * 179.91885 * 3 2 1 5 5 C 1.32906 * 108.63832 * 359.97438 * 4 3 2 6 6 C 1.34394 * 126.00884 * 179.97438 * 2 1 3 7 7 C 1.50539 * 129.25325 * 0.25566 * 6 2 1 8 8 C 1.53432 * 108.32290 * 163.45040 * 7 6 2 9 9 C 1.53102 * 109.55591 * 49.71840 * 8 7 6 10 10 H 1.08997 * 109.43646 * 49.94957 * 9 8 7 11 11 N 1.46500 * 109.45575 * 169.90325 * 9 8 7 12 12 C 1.34782 * 119.99958 * 205.10785 * 11 9 8 13 13 O 1.21598 * 119.99671 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99948 * 179.97438 * 12 11 9 15 15 C 1.40198 * 119.99688 * 180.02562 * 14 12 11 16 16 C 1.40395 * 125.97505 * 359.97438 * 15 14 12 17 17 C 1.35248 * 107.86835 * 180.02562 * 16 15 14 18 18 N 1.34965 * 107.85603 * 0.02562 * 17 16 15 19 19 C 1.46496 * 125.97295 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47106 * 124.99820 * 19 18 17 21 21 H 1.07999 * 119.99515 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00176 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47288 * 59.99994 * 24 22 20 26 26 H 1.48503 * 109.47086 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46819 * 299.99648 * 24 22 20 28 28 N 1.31212 * 125.96920 * 180.32833 * 15 14 12 29 29 C 1.50595 * 129.16149 * 180.10920 * 5 4 3 30 30 H 1.09002 * 109.47294 * 270.01896 * 1 2 3 31 31 H 1.09005 * 109.47058 * 30.02258 * 1 2 3 32 32 H 1.09002 * 109.47288 * 150.02036 * 1 2 3 33 33 H 1.09000 * 109.69218 * 283.16520 * 7 6 2 34 34 H 1.09000 * 109.69421 * 43.74473 * 7 6 2 35 35 H 1.08998 * 109.45830 * 289.68844 * 8 7 6 36 36 H 1.09007 * 109.45514 * 169.74614 * 8 7 6 37 37 H 0.96999 * 120.00164 * 25.10796 * 11 9 8 38 38 H 0.96996 * 119.99706 * 359.97438 * 14 12 11 39 39 H 1.08008 * 126.06424 * 359.97283 * 16 15 14 40 40 H 1.07997 * 126.07058 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47001 * 5.00110 * 19 18 17 42 42 H 1.09000 * 109.47574 * 245.00326 * 19 18 17 43 43 H 0.97004 * 119.99507 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.69337 * 43.78203 * 29 5 4 45 45 H 1.09000 * 109.68957 * 283.19837 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 0.0017 5 6 3.5327 -0.6332 0.0035 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0041 8 6 3.1012 -3.3638 -0.4163 9 6 4.3085 -2.9349 0.4219 10 1 4.0358 -2.9352 1.4772 11 7 5.4125 -3.8727 0.2029 12 6 6.3608 -4.0298 1.1477 13 8 6.3002 -3.3927 2.1816 14 7 7.3761 -4.8929 0.9464 15 6 8.3622 -5.0566 1.9294 16 6 8.4156 -4.3890 3.1633 17 6 9.5149 -4.8213 3.8219 18 7 10.1370 -5.7274 3.0386 19 6 11.3703 -6.4465 3.3671 20 6 11.1331 -7.9302 3.2503 21 1 10.1609 -8.3003 2.9598 22 6 12.1570 -8.8149 3.5141 23 7 13.3407 -8.3641 3.8682 24 14 11.8631 -10.6539 3.3685 25 1 11.4551 -10.9815 1.9788 26 1 13.1133 -11.3829 3.7016 27 1 10.7876 -11.0593 4.3088 28 7 9.4001 -5.8559 1.8543 29 6 4.7468 -1.5241 0.0081 30 1 -0.3634 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.5491 -2.8409 0.9934 34 1 1.0643 -2.7081 -0.7169 35 1 3.3135 -3.1945 -1.4719 36 1 2.9025 -4.4228 -0.2515 37 1 5.4610 -4.3807 -0.6221 38 1 7.4242 -5.4013 0.1218 39 1 7.7052 -3.6590 3.5225 40 1 9.8377 -4.4987 4.8007 41 1 11.6705 -6.2058 4.3870 42 1 12.1593 -6.1492 2.6764 43 1 14.0612 -8.9867 4.0534 44 1 5.4792 -1.1433 0.7198 45 1 5.1844 -1.5536 -0.9898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594068396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:17 Heat of formation + Delta-G solvation = 154.724775 kcal Electronic energy + Delta-G solvation = -28822.588971 eV Core-core repulsion = 24686.515447 eV Total energy + Delta-G solvation = -4136.073524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.73717 -40.74848 -39.75576 -37.69005 -35.30809 -34.66683 -33.99594 -33.25032 -30.98157 -30.72761 -29.54590 -29.18863 -28.19819 -26.59342 -24.69291 -23.42586 -22.75686 -21.75294 -21.56484 -20.43855 -20.29919 -19.65070 -17.96091 -17.56424 -17.23251 -16.65857 -16.54366 -16.01089 -15.54453 -15.14032 -14.75651 -14.62560 -14.38123 -14.26232 -14.18576 -14.11952 -13.76727 -13.63076 -13.24781 -12.84804 -12.66258 -12.46121 -12.30577 -12.18737 -12.00389 -11.75116 -11.70086 -11.37279 -11.05311 -10.91329 -10.84692 -10.43794 -10.30670 -10.23873 -10.06543 -9.67541 -9.49546 -9.35012 -9.16981 -8.61094 -8.07487 -7.38952 -6.22274 -4.27363 1.19824 1.93403 2.24458 2.33316 2.68177 3.12124 3.26326 3.29676 3.33785 3.54346 3.73683 3.86559 4.02012 4.17499 4.22271 4.31840 4.35377 4.42240 4.44976 4.65740 4.70358 4.75524 4.97576 5.00978 5.12669 5.15810 5.30583 5.41003 5.52699 5.57684 5.70579 5.75955 5.84611 5.98773 6.18818 6.20805 6.30749 6.56913 6.59667 6.89962 7.02971 7.12727 7.52172 7.71278 7.84226 7.98987 8.09600 8.19968 8.58911 8.68877 8.82704 9.38007 10.86314 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.001744 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.801516 B =16051.899768 C =16597.486222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.285 5.285 3 N -0.097 5.097 4 N -0.258 5.258 5 C -0.006 4.006 6 C -0.027 4.027 7 C -0.037 4.037 8 C -0.124 4.124 9 C 0.170 3.830 10 H 0.097 0.903 11 N -0.740 5.740 12 C 0.714 3.286 13 O -0.564 6.564 14 N -0.643 5.643 15 C 0.275 3.725 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.320 5.320 19 C 0.259 3.741 20 C -0.528 4.528 21 H 0.068 0.932 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.308 5.308 29 C -0.047 4.047 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.398 0.602 38 H 0.407 0.593 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.267 0.733 44 H 0.095 0.905 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.541 11.696 -10.471 31.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.077 5.077 3 N -0.075 5.075 4 N -0.122 5.122 5 C -0.147 4.147 6 C -0.161 4.161 7 C -0.077 4.077 8 C -0.162 4.162 9 C 0.063 3.937 10 H 0.115 0.885 11 N -0.396 5.396 12 C 0.413 3.587 13 O -0.439 6.439 14 N -0.292 5.292 15 C 0.021 3.979 16 C -0.317 4.317 17 C -0.099 4.099 18 N -0.102 5.102 19 C 0.141 3.859 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.201 1.201 28 N -0.139 5.139 29 C -0.088 4.088 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.233 0.767 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.670 12.901 -10.131 31.311 hybrid contribution -0.618 -1.927 -0.375 2.058 sum -27.288 10.975 -10.506 31.232 Atomic orbital electron populations 1.22271 0.72824 1.05874 1.05145 1.46833 1.09126 1.04670 1.47101 1.78617 0.96138 1.11279 1.21445 1.74841 1.09419 1.11980 1.16000 1.21554 0.94619 0.91382 1.07165 1.21838 0.91263 0.92294 1.10677 1.20083 0.98587 0.85697 1.03358 1.21861 0.93109 1.00519 1.00739 1.20771 0.84620 0.86818 1.01455 0.88453 1.44994 1.26698 1.46964 1.20905 1.15626 0.79283 0.80085 0.83703 1.90888 1.76734 1.49664 1.26577 1.41364 1.23593 1.44186 1.20093 1.18771 0.90782 0.98256 0.90064 1.21513 1.03424 1.11093 0.95689 1.22558 0.94896 0.94205 0.98267 1.49041 1.20986 1.30141 1.10057 1.19726 0.76982 0.91943 0.97228 1.21221 0.98329 0.89566 1.47555 0.91373 1.24944 0.94699 0.99785 0.94665 1.69915 1.02018 1.35508 1.45914 0.86385 0.77495 0.83754 0.78831 1.19979 1.21070 1.20071 1.77317 1.06158 1.23603 1.06833 1.20405 0.93164 0.91625 1.03599 0.88907 0.87952 0.88348 0.89125 0.89565 0.90379 0.89307 0.76747 0.75865 0.82167 0.81564 0.92548 0.93764 0.92300 0.88675 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.27 59.85 0.67 0.87 16 2 N -0.29 -2.28 3.73 -64.00 -0.24 -2.52 16 3 N -0.10 -1.16 13.19 60.35 0.80 -0.36 16 4 N -0.26 -3.49 12.40 33.16 0.41 -3.08 16 5 C -0.01 -0.07 7.11 -83.13 -0.59 -0.66 16 6 C -0.03 -0.21 6.76 -82.50 -0.56 -0.77 16 7 C -0.04 -0.15 5.97 -27.74 -0.17 -0.31 16 8 C -0.12 -0.52 5.37 -26.46 -0.14 -0.66 16 9 C 0.17 1.33 2.42 -67.66 -0.16 1.17 16 10 H 0.10 0.96 7.55 -51.93 -0.39 0.57 16 11 N -0.74 -6.30 5.08 -58.41 -0.30 -6.59 16 12 C 0.71 9.77 8.50 -86.91 -0.74 9.03 16 13 O -0.56 -9.75 13.13 5.28 0.07 -9.68 16 14 N -0.64 -9.53 5.46 -15.50 -0.08 -9.61 16 15 C 0.28 5.47 8.11 -154.36 -1.25 4.22 16 16 C -0.29 -5.70 9.61 -39.84 -0.38 -6.08 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 18 N -0.32 -7.46 3.66 -62.56 -0.23 -7.69 16 19 C 0.26 6.59 6.26 -5.19 -0.03 6.56 16 20 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 21 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 24 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 N -0.31 -7.05 12.43 31.44 0.39 -6.66 16 29 C -0.05 -0.46 5.88 -27.72 -0.16 -0.62 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.10 -0.02 7.71 -51.93 -0.40 -0.42 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.14 7.87 -51.93 -0.41 -0.27 16 35 H 0.08 0.28 8.12 -51.93 -0.42 -0.15 16 36 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 37 H 0.40 2.13 8.62 -40.82 -0.35 1.77 16 38 H 0.41 4.75 8.84 -40.82 -0.36 4.39 16 39 H 0.16 3.14 5.91 -52.48 -0.31 2.83 16 40 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -37.52 380.48 -7.85 -45.37 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.99 Total: 3.26 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.13 Total: 0.17 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 1.48 Total: -61.11 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.52 -7.85 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594068396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.092 kcal (2) G-P(sol) polarization free energy of solvation -37.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds