Wall clock time and date at job start Wed Apr 1 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29104 * 126.00540 * 2 1 4 4 N 1.29017 * 110.25621 * 179.91885 * 3 2 1 5 5 C 1.32906 * 108.63832 * 359.97438 * 4 3 2 6 6 C 1.34394 * 126.00884 * 179.97438 * 2 1 3 7 7 C 1.50539 * 129.25325 * 0.25566 * 6 2 1 8 8 C 1.53432 * 108.32290 * 163.45040 * 7 6 2 9 9 C 1.53102 * 109.55591 * 49.71840 * 8 7 6 10 10 H 1.08997 * 109.43646 * 49.94957 * 9 8 7 11 11 N 1.46500 * 109.45575 * 169.90325 * 9 8 7 12 12 C 1.34782 * 119.99958 * 205.10785 * 11 9 8 13 13 O 1.21598 * 119.99671 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99948 * 179.97438 * 12 11 9 15 15 C 1.40198 * 119.99688 * 180.02562 * 14 12 11 16 16 C 1.40395 * 125.97505 * 359.97438 * 15 14 12 17 17 C 1.35248 * 107.86835 * 180.02562 * 16 15 14 18 18 N 1.34965 * 107.85603 * 0.02562 * 17 16 15 19 19 C 1.46496 * 125.97295 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47106 * 124.99820 * 19 18 17 21 21 H 1.07999 * 119.99515 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00176 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47288 * 59.99994 * 24 22 20 26 26 H 1.48503 * 109.47086 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46819 * 299.99648 * 24 22 20 28 28 N 1.31212 * 125.96920 * 180.32833 * 15 14 12 29 29 C 1.50595 * 129.16149 * 180.10920 * 5 4 3 30 30 H 1.09002 * 109.47294 * 270.01896 * 1 2 3 31 31 H 1.09005 * 109.47058 * 30.02258 * 1 2 3 32 32 H 1.09002 * 109.47288 * 150.02036 * 1 2 3 33 33 H 1.09000 * 109.69218 * 283.16520 * 7 6 2 34 34 H 1.09000 * 109.69421 * 43.74473 * 7 6 2 35 35 H 1.08998 * 109.45830 * 289.68844 * 8 7 6 36 36 H 1.09007 * 109.45514 * 169.74614 * 8 7 6 37 37 H 0.96999 * 120.00164 * 25.10796 * 11 9 8 38 38 H 0.96996 * 119.99706 * 359.97438 * 14 12 11 39 39 H 1.08008 * 126.06424 * 359.97283 * 16 15 14 40 40 H 1.07997 * 126.07058 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47001 * 5.00110 * 19 18 17 42 42 H 1.09000 * 109.47574 * 245.00326 * 19 18 17 43 43 H 0.97004 * 119.99507 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.69337 * 43.78203 * 29 5 4 45 45 H 1.09000 * 109.68957 * 283.19837 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 0.0017 5 6 3.5327 -0.6332 0.0035 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0041 8 6 3.1012 -3.3638 -0.4163 9 6 4.3085 -2.9349 0.4219 10 1 4.0358 -2.9352 1.4772 11 7 5.4125 -3.8727 0.2029 12 6 6.3608 -4.0298 1.1477 13 8 6.3002 -3.3927 2.1816 14 7 7.3761 -4.8929 0.9464 15 6 8.3622 -5.0566 1.9294 16 6 8.4156 -4.3890 3.1633 17 6 9.5149 -4.8213 3.8219 18 7 10.1370 -5.7274 3.0386 19 6 11.3703 -6.4465 3.3671 20 6 11.1331 -7.9302 3.2503 21 1 10.1609 -8.3003 2.9598 22 6 12.1570 -8.8149 3.5141 23 7 13.3407 -8.3641 3.8682 24 14 11.8631 -10.6539 3.3685 25 1 11.4551 -10.9815 1.9788 26 1 13.1133 -11.3829 3.7016 27 1 10.7876 -11.0593 4.3088 28 7 9.4001 -5.8559 1.8543 29 6 4.7468 -1.5241 0.0081 30 1 -0.3634 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.5491 -2.8409 0.9934 34 1 1.0643 -2.7081 -0.7169 35 1 3.3135 -3.1945 -1.4719 36 1 2.9025 -4.4228 -0.2515 37 1 5.4610 -4.3807 -0.6221 38 1 7.4242 -5.4013 0.1218 39 1 7.7052 -3.6590 3.5225 40 1 9.8377 -4.4987 4.8007 41 1 11.6705 -6.2058 4.3870 42 1 12.1593 -6.1492 2.6764 43 1 14.0612 -8.9867 4.0534 44 1 5.4792 -1.1433 0.7198 45 1 5.1844 -1.5536 -0.9898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594068396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:16 Heat of formation + Delta-G solvation = 126.885703 kcal Electronic energy + Delta-G solvation = -28823.796163 eV Core-core repulsion = 24686.515447 eV Total energy + Delta-G solvation = -4137.280717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.41167 -42.19260 -40.98606 -38.46069 -36.13176 -35.88219 -35.28599 -34.70839 -32.67061 -31.29997 -30.92806 -30.24998 -28.65334 -28.42902 -25.53359 -24.82018 -23.80398 -22.75148 -22.34585 -21.87475 -21.35329 -20.72144 -19.07135 -18.66241 -18.28960 -17.96994 -17.79477 -17.11838 -16.74073 -16.39926 -16.11773 -15.56478 -15.50190 -15.45478 -14.96741 -14.80364 -14.62042 -14.46565 -14.20977 -14.03530 -13.76928 -13.66233 -13.58679 -13.19010 -13.01707 -12.90715 -12.70607 -12.67116 -12.25513 -12.24191 -12.06083 -11.86854 -11.62460 -11.55580 -11.37273 -11.07969 -10.93111 -10.69634 -10.24654 -9.85759 -9.69011 -9.01961 -8.30076 -6.44579 0.58040 1.09897 1.16449 1.40306 1.42514 1.45949 1.51168 1.52647 1.74338 2.12605 2.38281 2.45297 3.01267 3.07371 3.28601 3.65449 3.75064 3.81194 3.84271 4.01215 4.17054 4.26421 4.31147 4.31678 4.47117 4.57790 4.60335 4.72433 4.76974 4.85614 4.93097 4.94719 4.98099 4.99590 5.05050 5.13437 5.20004 5.23848 5.26823 5.53159 5.59239 5.69552 5.80581 5.93951 6.02250 6.32121 6.66262 6.82169 7.20328 7.25256 7.46793 7.49846 8.77062 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.001744 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.801516 B =16051.899768 C =16597.486222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.135 5.135 4 N -0.309 5.309 5 C -0.037 4.037 6 C -0.009 4.009 7 C -0.035 4.035 8 C -0.115 4.115 9 C 0.172 3.828 10 H 0.077 0.923 11 N -0.713 5.713 12 C 0.712 3.288 13 O -0.601 6.601 14 N -0.635 5.635 15 C 0.286 3.714 16 C -0.293 4.293 17 C 0.054 3.946 18 N -0.345 5.345 19 C 0.272 3.728 20 C -0.547 4.547 21 H 0.054 0.946 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.973 3.027 25 H -0.272 1.272 26 H -0.275 1.275 27 H -0.269 1.269 28 N -0.347 5.347 29 C -0.042 4.042 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.419 0.581 38 H 0.422 0.578 39 H 0.165 0.835 40 H 0.198 0.802 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.272 0.728 44 H 0.057 0.943 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.742 9.819 -11.616 34.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.113 5.113 4 N -0.172 5.172 5 C -0.179 4.179 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.153 4.153 9 C 0.067 3.933 10 H 0.096 0.904 11 N -0.369 5.369 12 C 0.411 3.589 13 O -0.478 6.478 14 N -0.287 5.287 15 C 0.031 3.969 16 C -0.324 4.324 17 C -0.094 4.094 18 N -0.127 5.127 19 C 0.154 3.846 20 C -0.585 4.585 21 H 0.072 0.928 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.199 1.199 27 H -0.194 1.194 28 N -0.178 5.178 29 C -0.082 4.082 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.257 0.743 38 H 0.260 0.740 39 H 0.183 0.817 40 H 0.215 0.785 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -29.936 11.055 -11.336 33.866 hybrid contribution 0.221 -1.226 -0.044 1.246 sum -29.715 9.829 -11.380 33.303 Atomic orbital electron populations 1.22804 0.69671 1.08069 1.06811 1.47281 1.10810 1.03857 1.44959 1.78501 0.96152 1.12980 1.23618 1.74750 1.10781 1.13898 1.17797 1.21820 0.96312 0.90892 1.08860 1.22423 0.90117 0.94035 1.07846 1.20355 0.99378 0.82277 1.05381 1.21875 0.90993 1.01837 1.00612 1.20856 0.85532 0.85616 1.01333 0.90434 1.44812 1.25260 1.46413 1.20428 1.15832 0.79539 0.79381 0.84101 1.90862 1.77548 1.50901 1.28535 1.41362 1.22815 1.44717 1.19770 1.19068 0.90501 0.96538 0.90840 1.21680 1.03502 1.11274 0.95963 1.23133 0.94371 0.92798 0.99106 1.48795 1.21211 1.31558 1.11164 1.19322 0.77600 0.91258 0.96449 1.21380 0.97967 0.91017 1.48171 0.92788 1.25762 0.94316 1.04250 0.93982 1.70001 1.02694 1.37116 1.46189 0.85383 0.77824 0.78278 0.78836 1.19725 1.19939 1.19442 1.77236 1.07551 1.25630 1.07387 1.20312 0.92413 0.92601 1.02901 0.87430 0.87386 0.84668 0.87707 0.85634 0.88892 0.86816 0.74336 0.74028 0.81725 0.78486 0.92511 0.96162 0.91897 0.92417 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 11.27 127.77 1.44 1.57 16 2 N -0.28 -3.99 3.73 -356.40 -1.33 -5.32 16 3 N -0.13 -3.29 13.19 37.02 0.49 -2.81 16 4 N -0.31 -8.81 12.40 -49.00 -0.61 -9.41 16 5 C -0.04 -0.80 7.11 41.75 0.30 -0.50 16 6 C -0.01 -0.12 6.76 41.50 0.28 0.16 16 7 C -0.03 -0.11 5.97 29.94 0.18 0.06 16 8 C -0.11 -0.49 5.37 30.77 0.17 -0.32 16 9 C 0.17 2.41 2.42 45.17 0.11 2.52 16 10 H 0.08 1.46 7.55 -2.39 -0.02 1.44 16 11 N -0.71 -10.73 5.08 -456.96 -2.32 -13.06 16 12 C 0.71 18.88 8.50 179.05 1.52 20.40 16 13 O -0.60 -20.88 13.13 -4.03 -0.05 -20.93 16 14 N -0.63 -18.29 5.46 -321.22 -1.75 -20.04 16 15 C 0.29 11.39 8.11 133.31 1.08 12.47 16 16 C -0.29 -11.71 9.61 22.11 0.21 -11.50 16 17 C 0.05 2.20 11.44 83.52 0.96 3.15 16 18 N -0.35 -16.40 3.66 -351.84 -1.29 -17.69 16 19 C 0.27 14.29 6.26 85.64 0.54 14.82 16 20 C -0.55 -30.92 9.24 25.60 0.24 -30.68 16 21 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 22 C 0.02 0.95 5.46 84.65 0.46 1.41 16 23 N -0.92 -52.42 13.29 21.45 0.28 -52.14 16 24 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 N -0.35 -16.11 12.43 -54.44 -0.68 -16.78 16 29 C -0.04 -0.81 5.88 29.96 0.18 -0.64 16 30 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.14 -0.73 7.71 -2.39 -0.02 -0.75 16 33 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.13 -0.43 7.87 -2.39 -0.02 -0.45 16 35 H 0.09 0.21 8.12 -2.39 -0.02 0.19 16 36 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.42 3.14 8.62 -92.71 -0.80 2.34 16 38 H 0.42 9.26 8.84 -92.71 -0.82 8.44 16 39 H 0.17 6.49 5.91 -2.91 -0.02 6.47 16 40 H 0.20 6.39 8.06 -2.91 -0.02 6.37 16 41 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 42 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -86.67 380.48 1.86 -84.81 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -0.56 Total: 15.02 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 7.65 Total: 12.93 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -7.20 Total: -137.24 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -86.67 1.86 -84.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594068396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.692 kcal (2) G-P(sol) polarization free energy of solvation -86.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds