Wall clock time and date at job start Wed Apr 1 2020 03:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47389 * 2 1 4 4 C 1.50704 * 109.47121 * 120.00234 * 2 1 3 5 5 O 1.21279 * 119.99749 * 111.17548 * 4 2 1 6 6 N 1.34775 * 119.99824 * 291.17293 * 4 2 1 7 7 C 1.46964 * 120.59355 * 185.32159 * 6 4 2 8 8 C 1.53369 * 108.63697 * 124.74983 * 7 6 4 9 9 N 1.46963 * 108.63080 * 49.42224 * 8 7 6 10 10 C 1.36948 * 120.58976 * 124.75058 * 9 8 7 11 11 H 1.07999 * 119.99835 * 204.90181 * 10 9 8 12 12 C 1.38808 * 119.99916 * 24.90640 * 10 9 8 13 13 N 1.31624 * 120.00028 * 18.07682 * 12 10 9 14 14 Si 1.86801 * 120.00017 * 198.07063 * 12 10 9 15 15 H 1.48503 * 109.46958 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46663 * 120.00350 * 14 12 10 17 17 H 1.48499 * 109.47598 * 240.00260 * 14 12 10 18 18 C 1.46962 * 118.82002 * 304.77607 * 9 8 7 19 19 C 1.46957 * 120.59493 * 5.29981 * 6 4 2 20 20 N 1.46508 * 109.46917 * 240.00113 * 2 1 3 21 21 C 1.36310 * 126.27858 * 299.68789 * 20 2 1 22 22 N 1.30137 * 109.97806 * 179.81175 * 21 20 2 23 23 C 1.35466 * 109.44018 * 0.46099 * 22 21 20 24 24 C 1.37195 * 126.27814 * 120.00336 * 20 2 1 25 25 N 1.32901 * 134.91882 * 0.02562 * 24 20 2 26 26 C 1.31644 * 120.63794 * 179.97438 * 25 24 20 27 27 N 1.32049 * 122.46507 * 0.02562 * 26 25 24 28 28 C 1.32904 * 121.18857 * 359.97438 * 27 26 25 29 29 N 1.38400 * 120.76771 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47003 * 187.42951 * 1 2 3 31 31 H 1.09003 * 109.46706 * 307.42849 * 1 2 3 32 32 H 1.09003 * 109.47053 * 67.42953 * 1 2 3 33 33 H 1.09005 * 109.60587 * 5.00621 * 7 6 4 34 34 H 1.08996 * 109.61065 * 244.49872 * 7 6 4 35 35 H 1.08996 * 109.61079 * 169.16624 * 8 7 6 36 36 H 1.09005 * 109.61015 * 289.51098 * 8 7 6 37 37 H 0.97005 * 119.99844 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.61449 * 174.97206 * 18 9 8 39 39 H 1.09005 * 109.60541 * 295.48116 * 18 9 8 40 40 H 1.08994 * 109.61092 * 115.50084 * 19 6 4 41 41 H 1.09004 * 109.75339 * 355.07785 * 19 6 4 42 42 H 1.08002 * 125.00919 * 359.97438 * 21 20 2 43 43 H 1.07999 * 118.76789 * 179.97438 * 26 25 24 44 44 H 0.96994 * 119.99891 * 0.02562 * 29 28 27 45 45 H 0.97000 * 119.99306 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.5921 -1.7813 1.1263 6 7 1.8595 -0.1558 2.4466 7 6 2.4448 -0.7780 3.6425 8 6 3.3159 0.2611 4.3590 9 7 2.5392 1.4992 4.5129 10 6 2.3635 2.0627 5.7486 11 1 1.5096 2.6967 5.9365 12 6 3.2830 1.8190 6.7595 13 7 4.4809 1.3611 6.4633 14 14 2.8204 2.1412 8.5405 15 1 1.4264 2.6492 8.6056 16 1 2.9233 0.8782 9.3148 17 1 3.7433 3.1517 9.1168 18 6 1.9538 2.1214 3.3171 19 6 1.0827 1.0822 2.6005 20 7 2.0183 -0.6906 -1.1963 21 6 1.7740 -1.9883 -1.5346 22 7 2.3576 -2.2710 -2.6629 23 6 3.0200 -1.1788 -3.1140 24 6 2.8103 -0.1517 -2.1783 25 7 3.3620 1.0385 -2.3912 26 6 4.0955 1.2561 -3.4625 27 7 4.3200 0.3228 -4.3693 28 6 3.8097 -0.8977 -4.2417 29 7 4.0503 -1.8692 -5.1977 30 1 -0.3633 -1.0191 0.1329 31 1 -0.3633 0.6246 0.8161 32 1 -0.3633 0.3944 -0.9490 33 1 3.0583 -1.6297 3.3485 34 1 1.6487 -1.1102 4.3088 35 1 3.6018 -0.1158 5.3410 36 1 4.2105 0.4585 3.7683 37 1 5.1236 1.1912 7.1698 38 1 1.3403 2.9730 3.6109 39 1 2.7499 2.4536 2.6507 40 1 0.1897 0.8825 3.1926 41 1 0.7942 1.4604 1.6197 42 1 1.1812 -2.6791 -0.9535 43 1 4.5291 2.2348 -3.6056 44 1 4.5971 -1.6629 -5.9718 45 1 3.6719 -2.7562 -5.0935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597274097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:07 Heat of formation + Delta-G solvation = 114.755725 kcal Electronic energy + Delta-G solvation = -30658.527546 eV Core-core repulsion = 26520.720834 eV Total energy + Delta-G solvation = -4137.806712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.68125 -40.21554 -39.13547 -37.02605 -35.91685 -34.92513 -34.02228 -32.15894 -31.34748 -31.04071 -29.79933 -29.30449 -27.23288 -25.15610 -24.29400 -23.77240 -23.47126 -22.99349 -21.49694 -20.31086 -19.19762 -18.61528 -18.29040 -17.43714 -16.78342 -16.54802 -16.35930 -15.93025 -15.45178 -15.16383 -14.87490 -14.80739 -14.41399 -14.11978 -14.00826 -13.77499 -13.70769 -13.60691 -13.39734 -12.94537 -12.60118 -12.41806 -12.24784 -12.05076 -11.70649 -11.56850 -11.31656 -10.92416 -10.84504 -10.65018 -10.47978 -10.35226 -10.28170 -10.01587 -9.95615 -9.62905 -9.30053 -9.16422 -8.71565 -8.43961 -8.00867 -6.86016 -5.92110 -3.35683 0.80495 1.27343 2.03785 2.56608 2.68619 3.12163 3.19050 3.29327 3.37647 3.39351 3.84530 3.91214 4.01844 4.18659 4.36889 4.41168 4.52374 4.61229 4.76587 4.95683 5.02524 5.19442 5.23194 5.24390 5.51245 5.57611 5.61238 5.66511 5.75220 5.82703 5.97581 6.17402 6.21984 6.31058 6.35237 6.54343 6.57769 6.67691 6.75429 6.96713 7.12886 7.44713 7.47690 7.58927 7.60995 7.65139 8.18929 8.21641 8.26023 9.03084 9.66415 10.20166 11.15058 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002556 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.334990 B =10950.219057 C =11239.342359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 H 0.132 0.868 4 C 0.501 3.499 5 O -0.541 6.541 6 N -0.585 5.585 7 C 0.089 3.911 8 C 0.154 3.846 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.071 0.929 12 C 0.001 3.999 13 N -0.901 5.901 14 Si 0.905 3.095 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.290 1.290 18 C 0.129 3.871 19 C 0.078 3.922 20 N -0.452 5.452 21 C 0.286 3.714 22 N -0.473 5.473 23 C -0.105 4.105 24 C 0.301 3.699 25 N -0.555 5.555 26 C 0.358 3.642 27 N -0.595 5.595 28 C 0.504 3.496 29 N -0.822 5.822 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.022 0.978 37 H 0.256 0.744 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.217 0.783 43 H 0.204 0.796 44 H 0.408 0.592 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 -3.763 -19.044 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.149 0.851 4 C 0.286 3.714 5 O -0.419 6.419 6 N -0.317 5.317 7 C -0.034 4.034 8 C 0.027 3.973 9 N -0.314 5.314 10 C -0.385 4.385 11 H 0.089 0.911 12 C -0.198 4.198 13 N -0.546 5.546 14 Si 0.735 3.265 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.217 1.217 18 C 0.001 3.999 19 C -0.046 4.046 20 N -0.144 5.144 21 C 0.000 4.000 22 N -0.192 5.192 23 C -0.232 4.232 24 C 0.060 3.940 25 N -0.279 5.279 26 C 0.066 3.934 27 N -0.325 5.325 28 C 0.250 3.750 29 N -0.364 5.364 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.220 0.780 44 H 0.238 0.762 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.965 -4.177 -19.279 20.919 hybrid contribution -0.317 -0.032 1.408 1.444 sum -7.282 -4.209 -17.870 19.751 Atomic orbital electron populations 1.22334 0.90731 1.04507 1.04710 1.21384 0.96879 0.98278 0.82131 0.85054 1.20310 0.80472 0.86033 0.84581 1.90714 1.43860 1.21537 1.85825 1.48003 1.51565 1.25698 1.06416 1.22612 0.98213 0.97916 0.84696 1.21316 0.90579 0.84679 1.00709 1.44049 1.61026 1.24119 1.02175 1.19260 1.04797 1.27670 0.86745 0.91135 1.25026 0.94549 1.01131 0.99072 1.70013 1.03769 1.49196 1.31596 0.86182 0.77927 0.77560 0.84835 1.20213 1.21450 1.21661 1.21289 0.95248 0.93483 0.89848 1.22681 0.95489 0.85721 1.00747 1.44780 1.40523 1.11442 1.17618 1.25182 0.98992 0.83096 0.92761 1.70256 1.12701 1.25696 1.10534 1.19646 1.09560 0.94005 0.99975 1.18675 0.94124 0.91526 0.89699 1.67235 1.15780 1.20327 1.24581 1.24404 0.89067 0.97393 0.82524 1.68014 1.30358 1.00346 1.33743 1.17752 0.85257 0.87566 0.84389 1.42160 1.56983 1.12942 1.24364 0.90916 0.88581 0.90514 0.90082 0.91732 0.87262 0.95987 0.93404 0.91182 0.95686 0.90812 0.90493 0.76644 0.78018 0.76197 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 8.77 37.16 0.33 -1.11 16 2 C 0.12 1.50 2.55 -69.08 -0.18 1.33 16 3 H 0.13 1.67 7.45 -51.93 -0.39 1.29 16 4 C 0.50 7.96 7.02 -10.98 -0.08 7.89 16 5 O -0.54 -10.23 14.73 5.56 0.08 -10.15 16 6 N -0.59 -9.60 2.95 -172.49 -0.51 -10.11 16 7 C 0.09 1.67 6.58 -3.60 -0.02 1.65 16 8 C 0.15 3.52 5.55 -3.60 -0.02 3.50 16 9 N -0.59 -13.70 2.98 -172.04 -0.51 -14.21 16 10 C -0.26 -6.52 9.61 -15.06 -0.14 -6.67 16 11 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 12 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 13 N -0.90 -25.16 10.99 55.49 0.61 -24.55 16 14 Si 0.91 20.70 29.59 -169.99 -5.03 15.67 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.13 2.36 6.67 -3.60 -0.02 2.34 16 19 C 0.08 1.11 5.53 -3.60 -0.02 1.09 16 20 N -0.45 -6.27 2.49 -111.74 -0.28 -6.55 16 21 C 0.29 3.77 10.68 -89.51 -0.96 2.81 16 22 N -0.47 -6.67 11.28 -11.85 -0.13 -6.80 16 23 C -0.10 -1.53 7.17 -84.55 -0.61 -2.13 16 24 C 0.30 4.57 8.01 -155.80 -1.25 3.32 16 25 N -0.55 -8.07 10.47 -13.90 -0.15 -8.22 16 26 C 0.36 4.37 12.25 -92.06 -1.13 3.24 16 27 N -0.59 -7.45 10.45 -13.61 -0.14 -7.60 16 28 C 0.50 6.39 7.87 -154.65 -1.22 5.17 16 29 N -0.82 -7.15 9.05 31.37 0.28 -6.87 16 30 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.10 0.73 5.49 -51.93 -0.28 0.44 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.56 7.02 -51.93 -0.36 1.20 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.11 2.80 5.74 -51.93 -0.30 2.50 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.82 4.29 -51.93 -0.22 0.60 16 42 H 0.22 2.24 8.05 -52.49 -0.42 1.82 16 43 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.41 2.62 8.95 -40.82 -0.37 2.25 16 45 H 0.42 3.18 8.85 -40.82 -0.36 2.82 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -33.81 366.33 -11.28 -45.09 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.62 Total: 6.42 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: -5.40 Total: 22.35 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -0.83 Total: -84.90 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.81 -11.28 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.844 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds