Wall clock time and date at job start Wed Apr 1 2020 03:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47389 * 2 1 4 4 C 1.50704 * 109.47121 * 120.00234 * 2 1 3 5 5 O 1.21279 * 119.99749 * 111.17548 * 4 2 1 6 6 N 1.34775 * 119.99824 * 291.17293 * 4 2 1 7 7 C 1.46964 * 120.59355 * 185.32159 * 6 4 2 8 8 C 1.53369 * 108.63697 * 124.74983 * 7 6 4 9 9 N 1.46963 * 108.63080 * 49.42224 * 8 7 6 10 10 C 1.36948 * 120.58976 * 124.75058 * 9 8 7 11 11 H 1.07999 * 119.99835 * 204.90181 * 10 9 8 12 12 C 1.38808 * 119.99916 * 24.90640 * 10 9 8 13 13 N 1.31624 * 120.00028 * 18.07682 * 12 10 9 14 14 Si 1.86801 * 120.00017 * 198.07063 * 12 10 9 15 15 H 1.48503 * 109.46958 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46663 * 120.00350 * 14 12 10 17 17 H 1.48499 * 109.47598 * 240.00260 * 14 12 10 18 18 C 1.46962 * 118.82002 * 304.77607 * 9 8 7 19 19 C 1.46957 * 120.59493 * 5.29981 * 6 4 2 20 20 N 1.46508 * 109.46917 * 240.00113 * 2 1 3 21 21 C 1.36310 * 126.27858 * 299.68789 * 20 2 1 22 22 N 1.30137 * 109.97806 * 179.81175 * 21 20 2 23 23 C 1.35466 * 109.44018 * 0.46099 * 22 21 20 24 24 C 1.37195 * 126.27814 * 120.00336 * 20 2 1 25 25 N 1.32901 * 134.91882 * 0.02562 * 24 20 2 26 26 C 1.31644 * 120.63794 * 179.97438 * 25 24 20 27 27 N 1.32049 * 122.46507 * 0.02562 * 26 25 24 28 28 C 1.32904 * 121.18857 * 359.97438 * 27 26 25 29 29 N 1.38400 * 120.76771 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47003 * 187.42951 * 1 2 3 31 31 H 1.09003 * 109.46706 * 307.42849 * 1 2 3 32 32 H 1.09003 * 109.47053 * 67.42953 * 1 2 3 33 33 H 1.09005 * 109.60587 * 5.00621 * 7 6 4 34 34 H 1.08996 * 109.61065 * 244.49872 * 7 6 4 35 35 H 1.08996 * 109.61079 * 169.16624 * 8 7 6 36 36 H 1.09005 * 109.61015 * 289.51098 * 8 7 6 37 37 H 0.97005 * 119.99844 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.61449 * 174.97206 * 18 9 8 39 39 H 1.09005 * 109.60541 * 295.48116 * 18 9 8 40 40 H 1.08994 * 109.61092 * 115.50084 * 19 6 4 41 41 H 1.09004 * 109.75339 * 355.07785 * 19 6 4 42 42 H 1.08002 * 125.00919 * 359.97438 * 21 20 2 43 43 H 1.07999 * 118.76789 * 179.97438 * 26 25 24 44 44 H 0.96994 * 119.99891 * 0.02562 * 29 28 27 45 45 H 0.97000 * 119.99306 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.5921 -1.7813 1.1263 6 7 1.8595 -0.1558 2.4466 7 6 2.4448 -0.7780 3.6425 8 6 3.3159 0.2611 4.3590 9 7 2.5392 1.4992 4.5129 10 6 2.3635 2.0627 5.7486 11 1 1.5096 2.6967 5.9365 12 6 3.2830 1.8190 6.7595 13 7 4.4809 1.3611 6.4633 14 14 2.8204 2.1412 8.5405 15 1 1.4264 2.6492 8.6056 16 1 2.9233 0.8782 9.3148 17 1 3.7433 3.1517 9.1168 18 6 1.9538 2.1214 3.3171 19 6 1.0827 1.0822 2.6005 20 7 2.0183 -0.6906 -1.1963 21 6 1.7740 -1.9883 -1.5346 22 7 2.3576 -2.2710 -2.6629 23 6 3.0200 -1.1788 -3.1140 24 6 2.8103 -0.1517 -2.1783 25 7 3.3620 1.0385 -2.3912 26 6 4.0955 1.2561 -3.4625 27 7 4.3200 0.3228 -4.3693 28 6 3.8097 -0.8977 -4.2417 29 7 4.0503 -1.8692 -5.1977 30 1 -0.3633 -1.0191 0.1329 31 1 -0.3633 0.6246 0.8161 32 1 -0.3633 0.3944 -0.9490 33 1 3.0583 -1.6297 3.3485 34 1 1.6487 -1.1102 4.3088 35 1 3.6018 -0.1158 5.3410 36 1 4.2105 0.4585 3.7683 37 1 5.1236 1.1912 7.1698 38 1 1.3403 2.9730 3.6109 39 1 2.7499 2.4536 2.6507 40 1 0.1897 0.8825 3.1926 41 1 0.7942 1.4604 1.6197 42 1 1.1812 -2.6791 -0.9535 43 1 4.5291 2.2348 -3.6056 44 1 4.5971 -1.6629 -5.9718 45 1 3.6719 -2.7562 -5.0935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597274097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:05 Heat of formation + Delta-G solvation = 92.941350 kcal Electronic energy + Delta-G solvation = -30659.473488 eV Core-core repulsion = 26520.720834 eV Total energy + Delta-G solvation = -4138.752654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.66749 -41.44034 -40.16972 -38.54961 -36.84389 -36.05908 -35.52125 -33.15238 -33.05929 -32.34519 -31.00086 -30.25344 -28.83300 -26.36856 -25.28842 -25.08604 -24.71645 -24.36908 -22.79098 -21.56010 -20.52727 -19.57832 -19.38571 -18.82737 -18.00722 -17.71957 -17.43482 -17.01437 -16.78064 -16.66028 -16.22015 -15.76972 -15.51338 -15.46304 -15.30294 -15.13814 -15.02009 -15.00284 -14.65823 -14.15016 -13.77854 -13.43383 -13.27288 -13.19492 -13.02895 -12.95804 -12.62993 -12.55111 -12.46595 -12.22448 -12.04499 -11.84863 -11.70201 -11.47242 -11.27785 -10.77278 -10.63148 -10.35417 -10.15902 -9.93356 -8.94435 -8.72624 -7.88932 -5.35071 -0.14783 0.26255 1.03181 1.35073 1.48008 1.50737 1.60268 1.66050 1.96147 2.30058 2.50625 2.86553 2.95836 3.07063 3.13870 3.26053 3.41579 3.55077 3.66306 3.71331 3.85899 4.10276 4.17184 4.18303 4.31580 4.44331 4.51114 4.58370 4.61169 4.73222 4.73954 4.77584 4.90632 5.03210 5.08390 5.22640 5.37691 5.39428 5.59143 5.64349 5.66781 5.84945 6.12972 6.32614 6.32981 6.58683 6.69725 6.90831 7.07816 7.28505 7.78446 8.29028 9.16395 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002556 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.334990 B =10950.219057 C =11239.342359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.132 0.868 4 C 0.502 3.498 5 O -0.574 6.574 6 N -0.589 5.589 7 C 0.106 3.894 8 C 0.164 3.836 9 N -0.608 5.608 10 C -0.254 4.254 11 H 0.082 0.918 12 C -0.057 4.057 13 N -0.940 5.940 14 Si 0.968 3.032 15 H -0.261 1.261 16 H -0.293 1.293 17 H -0.298 1.298 18 C 0.121 3.879 19 C 0.089 3.911 20 N -0.455 5.455 21 C 0.280 3.720 22 N -0.483 5.483 23 C -0.127 4.127 24 C 0.278 3.722 25 N -0.577 5.577 26 C 0.356 3.644 27 N -0.599 5.599 28 C 0.497 3.503 29 N -0.801 5.801 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.078 0.922 36 H -0.015 1.015 37 H 0.249 0.751 38 H 0.086 0.914 39 H 0.012 0.988 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.239 0.761 43 H 0.237 0.763 44 H 0.420 0.580 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 -3.219 -20.410 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.150 0.850 4 C 0.289 3.711 5 O -0.454 6.454 6 N -0.320 5.320 7 C -0.018 4.018 8 C 0.037 3.963 9 N -0.332 5.332 10 C -0.384 4.384 11 H 0.099 0.901 12 C -0.251 4.251 13 N -0.587 5.587 14 Si 0.797 3.203 15 H -0.184 1.184 16 H -0.220 1.220 17 H -0.225 1.225 18 C -0.005 4.005 19 C -0.034 4.034 20 N -0.147 5.147 21 C -0.006 4.006 22 N -0.202 5.202 23 C -0.254 4.254 24 C 0.037 3.963 25 N -0.303 5.303 26 C 0.066 3.934 27 N -0.330 5.330 28 C 0.242 3.758 29 N -0.345 5.345 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.003 0.997 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.030 0.970 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.255 0.745 43 H 0.252 0.748 44 H 0.253 0.747 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.417 -3.634 -20.710 23.039 hybrid contribution 0.505 -0.185 1.699 1.782 sum -8.912 -3.819 -19.011 21.341 Atomic orbital electron populations 1.22369 0.87265 1.05689 1.06145 1.21454 0.99298 0.97209 0.79924 0.85050 1.20907 0.79432 0.85657 0.85146 1.90699 1.45113 1.23257 1.86336 1.48012 1.51761 1.26379 1.05885 1.22145 0.97754 0.96195 0.85705 1.20985 0.90370 0.86024 0.98871 1.44306 1.61111 1.24509 1.03250 1.19662 1.04458 1.26552 0.87736 0.90071 1.25784 0.94574 1.02020 1.02735 1.70184 1.04903 1.51388 1.32189 0.85186 0.78081 0.76723 0.80306 1.18447 1.22039 1.22528 1.21533 0.95480 0.95259 0.88192 1.22732 0.94448 0.83417 1.02840 1.44907 1.40465 1.11681 1.17620 1.25668 0.98965 0.83250 0.92713 1.70224 1.13085 1.25759 1.11144 1.19937 1.10501 0.94136 1.00846 1.19031 0.94691 0.92128 0.90415 1.67304 1.16973 1.20330 1.25692 1.25160 0.88031 0.98537 0.81706 1.68127 1.30621 1.00393 1.33865 1.18007 0.84935 0.88228 0.84670 1.42139 1.56136 1.12473 1.23754 0.90010 0.86839 0.89152 0.90941 0.90729 0.90371 0.99674 0.94166 0.89592 0.96951 0.89000 0.86240 0.74534 0.74753 0.74731 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.77 71.98 0.63 -1.51 16 2 C 0.13 2.91 2.55 44.24 0.11 3.02 16 3 H 0.13 3.04 7.45 -2.39 -0.02 3.02 16 4 C 0.50 15.22 7.02 87.66 0.62 15.84 16 5 O -0.57 -21.42 14.73 -3.03 -0.04 -21.47 16 6 N -0.59 -18.42 2.95 -818.03 -2.41 -20.83 16 7 C 0.11 4.02 6.58 86.41 0.57 4.59 16 8 C 0.16 7.79 5.55 86.41 0.48 8.27 16 9 N -0.61 -28.19 2.98 -698.21 -2.08 -30.28 16 10 C -0.25 -12.90 9.61 84.03 0.81 -12.09 16 11 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 12 C -0.06 -3.01 4.93 84.86 0.42 -2.60 16 13 N -0.94 -54.43 10.99 21.65 0.24 -54.20 16 14 Si 0.97 42.95 29.59 68.60 2.03 44.98 16 15 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 18 C 0.12 4.25 6.67 86.42 0.58 4.83 16 19 C 0.09 2.24 5.53 86.42 0.48 2.72 16 20 N -0.46 -12.01 2.49 -507.45 -1.26 -13.27 16 21 C 0.28 7.04 10.68 179.96 1.92 8.96 16 22 N -0.48 -13.22 11.28 -191.41 -2.16 -15.38 16 23 C -0.13 -3.61 7.17 39.69 0.28 -3.33 16 24 C 0.28 8.21 8.01 133.86 1.07 9.28 16 25 N -0.58 -16.25 10.47 -197.89 -2.07 -18.32 16 26 C 0.36 8.25 12.25 180.85 2.22 10.46 16 27 N -0.60 -14.26 10.45 -196.96 -2.06 -16.31 16 28 C 0.50 12.07 7.87 133.46 1.05 13.12 16 29 N -0.80 -12.81 9.05 -54.65 -0.49 -13.31 16 30 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.11 1.15 5.49 -2.39 -0.01 1.14 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 2.86 7.02 -2.38 -0.02 2.84 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.08 4.21 5.74 -2.39 -0.01 4.19 16 36 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 37 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 38 H 0.09 2.72 7.92 -2.39 -0.02 2.70 16 39 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.12 2.04 4.29 -2.39 -0.01 2.03 16 42 H 0.24 4.54 8.05 -2.91 -0.02 4.52 16 43 H 0.24 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.42 4.66 8.95 -92.71 -0.83 3.83 16 45 H 0.42 5.88 8.85 -92.71 -0.82 5.06 16 Total: -1.00 -76.06 366.33 0.34 -75.72 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.58 Total: 21.08 kcal Atomic # 6 Polarization: 50.34 SS G_CDS: 11.23 Total: 61.58 kcal Atomic # 7 Polarization: -169.59 SS G_CDS: -12.30 Total: -181.90 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.06 0.34 -75.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.665 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds