Wall clock time and date at job start Wed Apr 1 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47525 * 2 1 4 4 C 1.42889 * 114.00254 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.87760 * 18.71203 * 4 3 2 6 6 C 1.53898 * 113.64615 * 247.30219 * 4 3 2 7 7 C 1.53902 * 87.19172 * 220.53824 * 6 4 3 8 8 H 1.09002 * 113.64067 * 270.46087 * 7 6 4 9 9 N 1.46495 * 113.72434 * 139.47968 * 7 6 4 10 10 C 1.34771 * 119.99972 * 176.29157 * 9 7 6 11 11 O 1.21608 * 120.00163 * 359.97438 * 10 9 7 12 12 C 1.47439 * 120.00338 * 179.97438 * 10 9 7 13 13 C 1.39227 * 120.27683 * 3.78928 * 12 10 9 14 14 C 1.38224 * 120.08775 * 179.97438 * 13 12 10 15 15 C 1.38827 * 120.67656 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.57157 * 359.97438 * 15 14 13 17 17 C 1.40707 * 119.87882 * 359.73272 * 16 15 14 18 18 C 1.40897 * 120.32417 * 180.25335 * 17 16 15 19 19 H 1.08003 * 119.99067 * 144.56789 * 18 17 16 20 20 C 1.40266 * 120.00438 * 324.56879 * 18 17 16 21 21 N 1.30632 * 119.99922 * 351.10405 * 20 18 17 22 22 Si 1.86794 * 120.00211 * 171.10676 * 20 18 17 23 23 H 1.48494 * 109.47642 * 89.99676 * 22 20 18 24 24 H 1.48508 * 109.47034 * 209.99850 * 22 20 18 25 25 H 1.48502 * 109.46960 * 329.99268 * 22 20 18 26 26 C 1.53145 * 86.89716 * 24.96371 * 7 6 4 27 27 C 1.53521 * 114.91039 * 91.39472 * 26 7 6 28 28 C 1.54971 * 103.89086 * 131.96677 * 27 26 7 29 29 C 1.55044 * 102.12506 * 20.84830 * 28 27 26 30 30 O 1.43069 * 115.23244 * 218.02667 * 26 7 6 31 31 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46882 * 60.00249 * 1 2 3 33 33 H 1.08999 * 109.47513 * 300.00741 * 1 2 3 34 34 H 1.09008 * 109.47021 * 119.99493 * 2 1 3 35 35 H 1.08996 * 109.47636 * 239.99769 * 2 1 3 36 36 H 1.09005 * 113.59407 * 335.11249 * 6 4 3 37 37 H 1.08997 * 113.59749 * 105.95652 * 6 4 3 38 38 H 0.97005 * 120.00192 * 356.28471 * 9 7 6 39 39 H 1.07999 * 119.95448 * 0.02562 * 13 12 10 40 40 H 1.08007 * 119.65974 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.71116 * 179.97438 * 15 14 13 42 42 H 1.07993 * 120.05804 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00477 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.54371 * 250.57119 * 27 26 7 45 45 H 1.08999 * 110.54237 * 13.36874 * 27 26 7 46 46 H 1.09006 * 110.87010 * 139.00936 * 28 27 26 47 47 H 1.09007 * 110.87338 * 262.48242 * 28 27 26 48 48 H 1.09003 * 110.59469 * 81.88679 * 29 28 27 49 49 H 1.08997 * 110.59491 * 204.81734 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9285 0.5453 -0.3212 6 6 4.0027 2.0513 1.3013 7 6 4.9833 2.8453 0.4201 8 1 5.9144 2.3164 0.2163 9 7 5.1977 4.2227 0.8704 10 6 6.0895 5.0083 0.2349 11 8 6.7166 4.5736 -0.7120 12 6 6.3049 6.3948 0.6877 13 6 5.6491 6.8739 1.8185 14 6 5.8544 8.1742 2.2399 15 6 6.7119 9.0167 1.5455 16 6 7.3741 8.5719 0.4244 17 6 7.1874 7.2506 -0.0219 18 6 7.8649 6.7837 -1.1657 19 1 8.2058 5.7599 -1.2108 20 6 8.0966 7.6484 -2.2455 21 7 7.5378 8.8289 -2.2685 22 14 9.2040 7.1118 -3.6508 23 1 8.3903 6.4326 -4.6908 24 1 9.8674 8.3024 -4.2407 25 1 10.2351 6.1740 -3.1382 26 6 3.9475 2.7197 -0.7009 27 6 2.9387 3.8740 -0.7815 28 6 2.9351 4.2610 -2.2821 29 6 3.4952 2.9790 -2.9503 30 8 4.4872 2.5102 -2.0093 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 3.2955 2.6798 1.8427 37 1 4.4887 1.3132 1.9393 38 1 4.6977 4.5694 1.6259 39 1 4.9798 6.2283 2.3677 40 1 5.3423 8.5386 3.1183 41 1 6.8604 10.0301 1.8883 42 1 8.0396 9.2342 -0.1092 43 1 7.6977 9.4268 -3.0153 44 1 1.9490 3.5395 -0.4704 45 1 3.2691 4.7141 -0.1706 46 1 1.9222 4.4682 -2.6273 47 1 3.5879 5.1148 -2.4645 48 1 2.7067 2.2372 -3.0776 49 1 3.9575 3.2167 -3.9084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601439286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:54 Heat of formation + Delta-G solvation = -78.379519 kcal Electronic energy + Delta-G solvation = -31630.762183 eV Core-core repulsion = 27523.535339 eV Total energy + Delta-G solvation = -4107.226844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.85303 -38.60128 -37.65229 -36.78714 -35.65305 -33.74026 -32.51758 -31.71995 -30.98899 -29.86840 -29.33113 -27.28787 -25.54531 -24.25414 -23.06730 -23.00859 -21.96426 -21.58295 -20.83155 -19.33257 -18.90829 -17.49784 -16.95469 -16.69689 -16.23614 -15.95339 -15.60088 -15.23309 -15.15815 -14.94139 -14.19845 -13.90001 -13.63596 -13.49261 -13.36696 -13.06202 -13.01650 -12.75386 -12.66870 -12.27001 -12.12824 -12.06954 -11.66551 -11.60813 -11.49413 -11.33770 -11.21112 -11.07314 -11.01242 -10.87256 -10.64356 -10.57142 -10.46575 -10.30993 -10.06040 -9.97274 -9.64671 -9.23785 -9.20509 -8.32794 -8.24804 -7.56587 -7.30547 -6.76411 -4.35594 2.39149 2.83940 3.12864 3.21289 3.26379 3.36399 4.01597 4.03353 4.12107 4.27957 4.44172 4.49573 4.70222 4.80846 4.83944 4.86339 5.00190 5.07981 5.14630 5.21329 5.29072 5.36527 5.51701 5.53157 5.64960 5.66262 5.71883 5.84932 5.87425 5.95327 5.99411 6.01620 6.09140 6.18701 6.26799 6.30964 6.31906 6.46600 6.63697 6.97070 7.04334 7.11598 7.18406 7.26463 7.29061 7.48753 7.64206 7.90600 8.02024 8.20772 8.42050 8.71840 8.86650 8.94204 9.49542 10.19439 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.003600 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.084898 B = 7776.763559 C = 8997.318396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.054 3.946 5 H 0.094 0.906 6 C -0.157 4.157 7 C 0.149 3.851 8 H 0.108 0.892 9 N -0.734 5.734 10 C 0.563 3.437 11 O -0.523 6.523 12 C -0.259 4.259 13 C -0.059 4.059 14 C -0.245 4.245 15 C -0.097 4.097 16 C -0.146 4.146 17 C 0.146 3.854 18 C -0.419 4.419 19 H 0.110 0.890 20 C 0.070 3.930 21 N -0.795 5.795 22 Si 0.916 3.084 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.259 1.259 26 C 0.077 3.923 27 C -0.123 4.123 28 C -0.151 4.151 29 C 0.050 3.950 30 O -0.347 6.347 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.393 0.607 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.281 0.719 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -12.459 3.696 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.286 6.286 4 C -0.005 4.005 5 H 0.112 0.888 6 C -0.195 4.195 7 C 0.042 3.958 8 H 0.126 0.874 9 N -0.389 5.389 10 C 0.357 3.643 11 O -0.400 6.400 12 C -0.264 4.264 13 C -0.077 4.077 14 C -0.264 4.264 15 C -0.116 4.116 16 C -0.165 4.165 17 C 0.142 3.858 18 C -0.447 4.447 19 H 0.127 0.873 20 C -0.148 4.148 21 N -0.420 5.420 22 Si 0.740 3.260 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.183 1.183 26 C 0.035 3.965 27 C -0.161 4.161 28 C -0.189 4.189 29 C -0.027 4.027 30 O -0.265 6.265 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.661 -12.492 2.785 16.657 hybrid contribution -0.047 -0.052 -0.285 0.293 sum -10.708 -12.543 2.501 16.681 Atomic orbital electron populations 1.21738 0.93909 1.02057 1.03101 1.22506 0.95440 0.84284 0.99951 1.87926 1.20289 1.25897 1.94534 1.24025 0.81253 0.98927 0.96255 0.88773 1.23587 0.98671 1.00228 0.96997 1.21949 0.97134 0.84422 0.92265 0.87419 1.45922 1.45045 1.11758 1.36181 1.18423 0.78184 0.85692 0.82001 1.90695 1.47409 1.74577 1.27294 1.19480 1.08414 0.94751 1.03738 1.20645 0.96998 0.94997 0.95108 1.20278 1.07655 0.95117 1.03364 1.20792 0.97268 0.97449 0.96100 1.21338 1.02150 0.97202 0.95833 1.17479 0.87181 0.90275 0.90837 1.20269 1.27397 0.99172 0.97854 0.87283 1.26120 0.94484 0.93810 1.00403 1.69719 1.34379 1.07441 1.30495 0.86176 0.80546 0.78857 0.80391 1.19347 1.20415 1.18274 1.23967 0.94212 0.93422 0.84906 1.22427 0.98965 0.97362 0.97317 1.23099 1.01543 0.99055 0.95166 1.23503 0.91247 0.94249 0.93691 1.88870 1.40022 1.83335 1.14290 0.91313 0.91918 0.91867 0.93450 0.93491 0.88477 0.89885 0.77214 0.89344 0.89174 0.89155 0.86670 0.90822 0.89731 0.89646 0.90839 0.90109 0.92818 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.50 6.50 37.16 0.24 0.74 16 3 O -0.37 -4.38 8.80 -35.23 -0.31 -4.69 16 4 C 0.05 0.68 4.11 -26.18 -0.11 0.57 16 5 H 0.09 1.10 7.87 -51.93 -0.41 0.70 16 6 C -0.16 -1.82 7.44 -25.80 -0.19 -2.01 16 7 C 0.15 2.35 3.73 -67.39 -0.25 2.10 16 8 H 0.11 1.87 8.02 -51.93 -0.42 1.45 16 9 N -0.73 -12.90 3.70 -54.35 -0.20 -13.10 16 10 C 0.56 12.92 7.73 -12.52 -0.10 12.82 16 11 O -0.52 -13.81 13.45 5.27 0.07 -13.74 16 12 C -0.26 -6.26 5.92 -104.37 -0.62 -6.88 16 13 C -0.06 -1.23 9.52 -39.22 -0.37 -1.61 16 14 C -0.24 -5.17 10.03 -39.37 -0.39 -5.57 16 15 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 16 C -0.15 -3.71 8.62 -38.88 -0.34 -4.05 16 17 C 0.15 3.92 5.49 -106.54 -0.58 3.34 16 18 C -0.42 -11.57 7.75 -37.81 -0.29 -11.86 16 19 H 0.11 3.15 5.77 -52.48 -0.30 2.85 16 20 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 21 N -0.79 -20.74 11.22 55.56 0.62 -20.11 16 22 Si 0.92 20.06 29.57 -169.99 -5.03 15.03 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 C 0.08 1.21 1.48 -90.20 -0.13 1.07 16 27 C -0.12 -1.89 6.09 -25.42 -0.15 -2.04 16 28 C -0.15 -2.34 7.16 -24.61 -0.18 -2.51 16 29 C 0.05 0.76 7.73 38.24 0.30 1.05 16 30 O -0.35 -6.32 11.28 -35.23 -0.40 -6.72 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 5.94 6.67 -40.82 -0.27 5.66 16 39 H 0.09 1.53 6.41 -52.49 -0.34 1.19 16 40 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.12 3.00 6.69 -52.49 -0.35 2.64 16 43 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 44 H 0.08 1.19 6.69 -51.93 -0.35 0.84 16 45 H 0.09 1.42 6.58 -51.93 -0.34 1.08 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -30.90 392.82 -10.01 -40.91 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -7.41 Total: 12.95 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.28 Total: -16.45 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.42 Total: -33.21 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.64 Total: -25.14 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.90 -10.01 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.473 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds