Wall clock time and date at job start Wed Apr 1 2020 04:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47525 * 2 1 4 4 C 1.42889 * 114.00254 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.87760 * 18.71203 * 4 3 2 6 6 C 1.53898 * 113.64615 * 247.30219 * 4 3 2 7 7 C 1.53902 * 87.19172 * 220.53824 * 6 4 3 8 8 H 1.09002 * 113.64067 * 270.46087 * 7 6 4 9 9 N 1.46495 * 113.72434 * 139.47968 * 7 6 4 10 10 C 1.34771 * 119.99972 * 176.29157 * 9 7 6 11 11 O 1.21608 * 120.00163 * 359.97438 * 10 9 7 12 12 C 1.47439 * 120.00338 * 179.97438 * 10 9 7 13 13 C 1.39227 * 120.27683 * 3.78928 * 12 10 9 14 14 C 1.38224 * 120.08775 * 179.97438 * 13 12 10 15 15 C 1.38827 * 120.67656 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.57157 * 359.97438 * 15 14 13 17 17 C 1.40707 * 119.87882 * 359.73272 * 16 15 14 18 18 C 1.40897 * 120.32417 * 180.25335 * 17 16 15 19 19 H 1.08003 * 119.99067 * 144.56789 * 18 17 16 20 20 C 1.40266 * 120.00438 * 324.56879 * 18 17 16 21 21 N 1.30632 * 119.99922 * 351.10405 * 20 18 17 22 22 Si 1.86794 * 120.00211 * 171.10676 * 20 18 17 23 23 H 1.48494 * 109.47642 * 89.99676 * 22 20 18 24 24 H 1.48508 * 109.47034 * 209.99850 * 22 20 18 25 25 H 1.48502 * 109.46960 * 329.99268 * 22 20 18 26 26 C 1.53145 * 86.89716 * 24.96371 * 7 6 4 27 27 C 1.53521 * 114.91039 * 91.39472 * 26 7 6 28 28 C 1.54971 * 103.89086 * 131.96677 * 27 26 7 29 29 C 1.55044 * 102.12506 * 20.84830 * 28 27 26 30 30 O 1.43069 * 115.23244 * 218.02667 * 26 7 6 31 31 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46882 * 60.00249 * 1 2 3 33 33 H 1.08999 * 109.47513 * 300.00741 * 1 2 3 34 34 H 1.09008 * 109.47021 * 119.99493 * 2 1 3 35 35 H 1.08996 * 109.47636 * 239.99769 * 2 1 3 36 36 H 1.09005 * 113.59407 * 335.11249 * 6 4 3 37 37 H 1.08997 * 113.59749 * 105.95652 * 6 4 3 38 38 H 0.97005 * 120.00192 * 356.28471 * 9 7 6 39 39 H 1.07999 * 119.95448 * 0.02562 * 13 12 10 40 40 H 1.08007 * 119.65974 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.71116 * 179.97438 * 15 14 13 42 42 H 1.07993 * 120.05804 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00477 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.54371 * 250.57119 * 27 26 7 45 45 H 1.08999 * 110.54237 * 13.36874 * 27 26 7 46 46 H 1.09006 * 110.87010 * 139.00936 * 28 27 26 47 47 H 1.09007 * 110.87338 * 262.48242 * 28 27 26 48 48 H 1.09003 * 110.59469 * 81.88679 * 29 28 27 49 49 H 1.08997 * 110.59491 * 204.81734 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9285 0.5453 -0.3212 6 6 4.0027 2.0513 1.3013 7 6 4.9833 2.8453 0.4201 8 1 5.9144 2.3164 0.2163 9 7 5.1977 4.2227 0.8704 10 6 6.0895 5.0083 0.2349 11 8 6.7166 4.5736 -0.7120 12 6 6.3049 6.3948 0.6877 13 6 5.6491 6.8739 1.8185 14 6 5.8544 8.1742 2.2399 15 6 6.7119 9.0167 1.5455 16 6 7.3741 8.5719 0.4244 17 6 7.1874 7.2506 -0.0219 18 6 7.8649 6.7837 -1.1657 19 1 8.2058 5.7599 -1.2108 20 6 8.0966 7.6484 -2.2455 21 7 7.5378 8.8289 -2.2685 22 14 9.2040 7.1118 -3.6508 23 1 8.3903 6.4326 -4.6908 24 1 9.8674 8.3024 -4.2407 25 1 10.2351 6.1740 -3.1382 26 6 3.9475 2.7197 -0.7009 27 6 2.9387 3.8740 -0.7815 28 6 2.9351 4.2610 -2.2821 29 6 3.4952 2.9790 -2.9503 30 8 4.4872 2.5102 -2.0093 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 3.2955 2.6798 1.8427 37 1 4.4887 1.3132 1.9393 38 1 4.6977 4.5694 1.6259 39 1 4.9798 6.2283 2.3677 40 1 5.3423 8.5386 3.1183 41 1 6.8604 10.0301 1.8883 42 1 8.0396 9.2342 -0.1092 43 1 7.6977 9.4268 -3.0153 44 1 1.9490 3.5395 -0.4704 45 1 3.2691 4.7141 -0.1706 46 1 1.9222 4.4682 -2.6273 47 1 3.5879 5.1148 -2.4645 48 1 2.7067 2.2372 -3.0776 49 1 3.9575 3.2167 -3.9084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601439286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:52 Heat of formation + Delta-G solvation = -97.054735 kcal Electronic energy + Delta-G solvation = -31631.572001 eV Core-core repulsion = 27523.535339 eV Total energy + Delta-G solvation = -4108.036662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.06319 -40.31843 -38.65593 -38.49812 -36.95998 -35.60347 -34.01941 -32.98873 -31.89116 -31.65684 -31.03332 -28.45100 -27.39099 -25.60353 -24.18376 -23.86783 -23.47652 -22.81504 -22.62166 -21.01378 -20.18912 -19.29967 -18.15490 -17.96217 -17.63049 -17.14386 -17.08065 -16.51771 -16.44926 -16.24582 -15.93759 -15.48730 -15.20225 -14.99597 -14.56232 -14.49838 -14.47207 -14.12838 -13.85918 -13.57141 -13.38099 -13.19800 -13.01699 -12.88820 -12.85953 -12.77537 -12.54212 -12.45593 -12.32290 -12.24556 -12.16947 -12.04751 -11.90738 -11.64973 -11.54671 -11.45714 -11.14445 -11.01875 -10.29907 -10.14490 -9.79563 -9.37055 -9.18844 -8.66885 -6.35082 0.54688 1.02129 1.30765 1.44093 1.47635 2.20149 2.24755 2.40685 2.78795 2.84662 3.02489 3.36090 3.40972 3.63549 3.72854 3.75842 3.92960 4.01117 4.14597 4.23334 4.27477 4.34608 4.39318 4.42981 4.46806 4.55128 4.61160 4.70167 4.72397 4.80007 4.85592 4.87476 4.92411 5.00504 5.06084 5.08621 5.10477 5.14081 5.19660 5.26512 5.32754 5.35811 5.63701 5.71161 5.83845 5.98108 6.08147 6.13141 6.31021 6.36866 6.67659 6.83283 6.94813 7.04675 7.75463 8.31094 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.003600 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.084898 B = 7776.763559 C = 8997.318396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.378 6.378 4 C 0.069 3.931 5 H 0.102 0.898 6 C -0.132 4.132 7 C 0.131 3.869 8 H 0.086 0.914 9 N -0.712 5.712 10 C 0.560 3.440 11 O -0.567 6.567 12 C -0.275 4.275 13 C -0.055 4.055 14 C -0.234 4.234 15 C -0.094 4.094 16 C -0.176 4.176 17 C 0.115 3.885 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.033 3.967 21 N -0.824 5.824 22 Si 0.973 3.027 23 H -0.273 1.273 24 H -0.255 1.255 25 H -0.265 1.265 26 C 0.062 3.938 27 C -0.117 4.117 28 C -0.152 4.152 29 C 0.048 3.952 30 O -0.384 6.384 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.407 0.593 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.288 0.712 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.040 0.960 48 H 0.080 0.920 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.884 -13.719 6.015 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.297 6.297 4 C 0.010 3.990 5 H 0.120 0.880 6 C -0.170 4.170 7 C 0.025 3.975 8 H 0.104 0.896 9 N -0.366 5.366 10 C 0.353 3.647 11 O -0.447 6.447 12 C -0.280 4.280 13 C -0.073 4.073 14 C -0.253 4.253 15 C -0.112 4.112 16 C -0.195 4.195 17 C 0.112 3.888 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.181 4.181 21 N -0.451 5.451 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.179 1.179 25 H -0.189 1.189 26 C 0.020 3.980 27 C -0.155 4.155 28 C -0.190 4.190 29 C -0.028 4.028 30 O -0.303 6.303 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.245 0.755 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.376 -13.755 5.152 19.866 hybrid contribution 0.628 0.293 -0.833 1.084 sum -12.748 -13.462 4.318 19.036 Atomic orbital electron populations 1.21748 0.92792 1.03269 1.02710 1.22740 0.96331 0.82994 1.00817 1.87898 1.19417 1.27828 1.94537 1.23773 0.82018 0.97600 0.95579 0.88019 1.23538 0.97098 0.99773 0.96565 1.22205 0.97379 0.83290 0.94673 0.89650 1.45606 1.43272 1.12149 1.35581 1.18437 0.78652 0.85890 0.81713 1.90677 1.49344 1.75407 1.29315 1.19872 1.08226 0.95333 1.04581 1.21077 0.96506 0.95862 0.93881 1.20809 1.06095 0.94606 1.03774 1.21178 0.96249 0.99084 0.94726 1.21268 1.03776 0.96885 0.97591 1.17852 0.88024 0.91641 0.91310 1.20174 1.30460 0.98457 0.99781 0.89934 1.26727 0.95456 0.93884 1.02045 1.69739 1.35607 1.08197 1.31565 0.85340 0.78696 0.78969 0.77466 1.19878 1.17921 1.18905 1.24265 0.94254 0.95502 0.83936 1.22384 0.99784 0.96728 0.96573 1.23080 1.02161 0.97756 0.95988 1.23627 0.91405 0.94669 0.93094 1.88829 1.41838 1.83728 1.15885 0.89354 0.92619 0.91918 0.91960 0.93279 0.87021 0.87144 0.75486 0.84860 0.84879 0.86300 0.88525 0.90180 0.87780 0.91325 0.88031 0.94128 0.90143 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.70 6.50 71.98 0.47 1.17 16 3 O -0.38 -7.76 8.80 -148.98 -1.31 -9.07 16 4 C 0.07 1.56 4.11 30.95 0.13 1.69 16 5 H 0.10 2.14 7.87 -2.39 -0.02 2.12 16 6 C -0.13 -2.63 7.44 31.20 0.23 -2.40 16 7 C 0.13 4.03 3.73 45.35 0.17 4.20 16 8 H 0.09 3.04 8.02 -2.39 -0.02 3.02 16 9 N -0.71 -24.57 3.70 -444.12 -1.65 -26.21 16 10 C 0.56 26.50 7.73 86.67 0.67 27.17 16 11 O -0.57 -31.93 13.45 -4.05 -0.05 -31.98 16 12 C -0.28 -13.53 5.92 -19.70 -0.12 -13.65 16 13 C -0.05 -2.17 9.52 22.50 0.21 -1.96 16 14 C -0.23 -9.09 10.03 22.41 0.22 -8.86 16 15 C -0.09 -4.10 10.01 22.26 0.22 -3.88 16 16 C -0.18 -9.21 8.62 22.72 0.20 -9.02 16 17 C 0.12 6.48 5.49 -21.11 -0.12 6.36 16 18 C -0.46 -27.24 7.75 23.41 0.18 -27.06 16 19 H 0.08 5.20 5.77 -2.91 -0.02 5.18 16 20 C 0.03 1.83 5.25 85.36 0.45 2.28 16 21 N -0.82 -45.25 11.22 21.88 0.25 -45.00 16 22 Si 0.97 43.55 29.57 68.60 2.03 45.58 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.06 1.89 1.48 -10.52 -0.02 1.88 16 27 C -0.12 -3.47 6.09 31.44 0.19 -3.28 16 28 C -0.15 -4.75 7.16 31.97 0.23 -4.52 16 29 C 0.05 1.48 7.73 72.68 0.56 2.04 16 30 O -0.38 -14.28 11.28 -148.98 -1.68 -15.96 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 1.96 8.11 -2.38 -0.02 1.94 16 37 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 11.32 6.67 -92.70 -0.62 10.70 16 39 H 0.13 4.01 6.41 -2.91 -0.02 3.99 16 40 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.10 5.31 6.69 -2.91 -0.02 5.29 16 43 H 0.29 14.30 8.29 -92.71 -0.77 13.53 16 44 H 0.10 2.65 6.69 -2.39 -0.02 2.64 16 45 H 0.07 2.24 6.58 -2.39 -0.02 2.22 16 46 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 47 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -73.57 392.82 2.56 -71.02 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.35 Total: 40.52 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.63 Total: -28.89 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.40 Total: -71.22 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -3.05 Total: -57.01 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.57 2.56 -71.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.039 kcal (2) G-P(sol) polarization free energy of solvation -73.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds