Wall clock time and date at job start Wed Apr 1 2020 04:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47034 * 2 1 4 4 C 1.42892 * 113.99996 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.87318 * 18.72253 * 4 3 2 6 6 C 1.54167 * 113.72976 * 247.35515 * 4 3 2 7 7 C 1.53879 * 87.08594 * 220.48349 * 6 4 3 8 8 H 1.09005 * 113.64238 * 139.54989 * 7 6 4 9 9 N 1.46497 * 113.64621 * 270.45333 * 7 6 4 10 10 C 1.34781 * 120.00022 * 254.05090 * 9 7 6 11 11 O 1.21610 * 119.99615 * 0.02562 * 10 9 7 12 12 C 1.47423 * 119.99966 * 179.97438 * 10 9 7 13 13 C 1.39226 * 120.28632 * 354.02852 * 12 10 9 14 14 C 1.38218 * 120.09498 * 179.97438 * 13 12 10 15 15 C 1.38830 * 120.67306 * 359.97438 * 14 13 12 16 16 C 1.37595 * 120.57448 * 0.02562 * 15 14 13 17 17 C 1.40708 * 119.87959 * 0.02562 * 16 15 14 18 18 C 1.40888 * 120.32553 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00272 * 143.91365 * 18 17 16 20 20 C 1.40271 * 120.00122 * 323.90571 * 18 17 16 21 21 N 1.30631 * 120.00036 * 350.09841 * 20 18 17 22 22 Si 1.86804 * 120.00172 * 170.09148 * 20 18 17 23 23 H 1.48508 * 109.46898 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46884 * 120.00120 * 22 20 18 25 25 H 1.48491 * 109.47332 * 240.00383 * 22 20 18 26 26 C 1.53195 * 87.01189 * 25.00127 * 7 6 4 27 27 C 1.53851 * 114.62516 * 218.77573 * 26 7 6 28 28 C 1.55442 * 102.04627 * 208.55637 * 27 26 7 29 29 C 1.54991 * 101.01757 * 33.67056 * 28 27 26 30 30 O 1.42629 * 115.41096 * 91.93696 * 26 7 6 31 31 H 1.09008 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47680 * 299.99830 * 1 2 3 33 33 H 1.09001 * 109.47401 * 60.00273 * 1 2 3 34 34 H 1.08994 * 109.47572 * 239.99706 * 2 1 3 35 35 H 1.09001 * 109.47401 * 119.99727 * 2 1 3 36 36 H 1.09004 * 113.68405 * 105.94208 * 6 4 3 37 37 H 1.09003 * 113.59974 * 335.01974 * 6 4 3 38 38 H 0.97000 * 120.00348 * 74.04446 * 9 7 6 39 39 H 1.08002 * 119.95042 * 359.97073 * 13 12 10 40 40 H 1.07994 * 119.66235 * 180.02562 * 14 13 12 41 41 H 1.08008 * 119.71077 * 180.27181 * 15 14 13 42 42 H 1.08003 * 120.06099 * 180.02562 * 16 15 14 43 43 H 0.96999 * 120.00014 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.91081 * 326.73524 * 27 26 7 45 45 H 1.08996 * 110.91812 * 90.36708 * 27 26 7 46 46 H 1.09005 * 111.11141 * 275.73190 * 28 27 26 47 47 H 1.09007 * 111.11251 * 151.60998 * 28 27 26 48 48 H 1.08994 * 110.30509 * 204.94682 * 29 28 27 49 49 H 1.09000 * 110.30848 * 82.78811 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 0.0006 5 1 3.9284 0.5454 -0.3214 6 6 4.0057 2.0510 1.3033 7 6 4.9852 2.8429 0.4192 8 1 5.1470 3.8672 0.7550 9 7 6.2350 2.1302 0.1429 10 6 7.3743 2.5043 0.7583 11 8 7.3646 3.4331 1.5432 12 6 8.6318 1.7868 0.4806 13 6 8.6281 0.6467 -0.3185 14 6 9.8095 -0.0226 -0.5766 15 6 11.0102 0.4298 -0.0466 16 6 11.0459 1.5535 0.7467 17 6 9.8570 2.2526 1.0257 18 6 9.8826 3.4040 1.8372 19 1 9.2237 4.2319 1.6208 20 6 10.7636 3.4750 2.9263 21 7 11.4187 2.4109 3.3070 22 14 11.0004 5.0914 3.8324 23 1 10.1496 6.1372 3.2096 24 1 10.6134 4.9221 5.2561 25 1 12.4258 5.4997 3.7521 26 6 3.9476 2.7203 -0.7012 27 6 4.5402 2.4767 -2.0999 28 6 3.4689 3.1221 -3.0230 29 6 2.9866 4.2999 -2.1385 30 8 3.0148 3.7955 -0.7918 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.4925 1.3133 1.9413 37 1 3.3003 2.6808 1.8454 38 1 6.2426 1.3891 -0.4829 39 1 7.7006 0.2847 -0.7371 40 1 9.7985 -0.9060 -1.1977 41 1 11.9249 -0.1027 -0.2620 42 1 11.9846 1.8984 1.1544 43 1 12.0283 2.4601 4.0599 44 1 5.5011 2.9796 -2.2083 45 1 4.6358 1.4098 -2.3016 46 1 2.6556 2.4257 -3.2272 47 1 3.9154 3.4839 -3.9493 48 1 1.9721 4.5884 -2.4131 49 1 3.6623 5.1494 -2.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601439287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:58 Heat of formation + Delta-G solvation = -79.807878 kcal Electronic energy + Delta-G solvation = -31054.022263 eV Core-core repulsion = 26946.733481 eV Total energy + Delta-G solvation = -4107.288782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.95256 -38.74934 -37.73574 -36.90134 -35.66736 -33.76988 -32.50625 -32.08122 -30.94190 -29.92865 -29.35638 -27.71000 -25.57692 -24.39567 -23.09573 -22.91860 -22.16386 -21.65736 -20.95464 -19.57962 -19.07379 -17.57448 -17.28781 -16.70791 -16.18479 -15.93346 -15.65819 -15.28846 -14.99310 -14.75511 -14.29561 -14.07864 -13.81792 -13.66023 -13.47330 -13.14744 -13.03490 -12.96955 -12.74256 -12.72253 -12.30193 -12.14127 -11.89737 -11.78285 -11.63738 -11.43098 -11.25395 -11.14703 -11.07134 -11.00068 -10.70401 -10.66855 -10.55581 -10.53617 -10.08626 -9.72873 -9.57814 -9.28176 -9.25661 -8.52629 -8.37272 -7.63549 -7.37623 -6.81399 -4.40266 2.31297 2.77533 3.11275 3.19773 3.21655 3.30361 3.63887 3.98255 4.02754 4.11567 4.31938 4.42872 4.59857 4.66291 4.78517 4.83429 4.88899 4.96158 5.06563 5.13781 5.17340 5.21531 5.45504 5.55843 5.58222 5.60230 5.63620 5.71916 5.73111 5.77296 5.90833 5.91912 5.95512 5.99078 6.11039 6.16740 6.23265 6.29187 6.58235 6.87991 6.90776 7.06258 7.10018 7.19980 7.33465 7.41778 7.57224 7.83456 7.94478 8.13816 8.32034 8.64207 8.79052 8.87138 9.35812 10.15087 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.003037 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.167490 B = 9218.125943 C = 9754.622334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.065 3.935 5 H 0.092 0.908 6 C -0.162 4.162 7 C 0.129 3.871 8 H 0.111 0.889 9 N -0.728 5.728 10 C 0.567 3.433 11 O -0.530 6.530 12 C -0.260 4.260 13 C -0.057 4.057 14 C -0.244 4.244 15 C -0.095 4.095 16 C -0.146 4.146 17 C 0.148 3.852 18 C -0.416 4.416 19 H 0.104 0.896 20 C 0.070 3.930 21 N -0.793 5.793 22 Si 0.915 3.085 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.089 3.911 27 C -0.145 4.145 28 C -0.152 4.152 29 C 0.050 3.950 30 O -0.336 6.336 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.390 0.610 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.282 0.718 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 -3.393 -9.610 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.277 6.277 4 C 0.006 3.994 5 H 0.109 0.891 6 C -0.202 4.202 7 C 0.022 3.978 8 H 0.129 0.871 9 N -0.383 5.383 10 C 0.362 3.638 11 O -0.407 6.407 12 C -0.265 4.265 13 C -0.076 4.076 14 C -0.264 4.264 15 C -0.114 4.114 16 C -0.165 4.165 17 C 0.144 3.856 18 C -0.444 4.444 19 H 0.122 0.878 20 C -0.148 4.148 21 N -0.418 5.418 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C 0.047 3.953 27 C -0.182 4.182 28 C -0.190 4.190 29 C -0.027 4.027 30 O -0.254 6.254 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.225 0.775 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.754 -2.525 -8.671 17.299 hybrid contribution 0.409 -0.337 0.029 0.531 sum -14.345 -2.862 -8.642 16.990 Atomic orbital electron populations 1.21719 0.93932 1.01930 1.03076 1.22524 0.95572 0.84621 0.99827 1.88051 1.19920 1.25248 1.94461 1.24281 0.81649 0.96541 0.96919 0.89062 1.23990 0.98510 1.00655 0.97020 1.21700 0.83400 0.98554 0.94183 0.87090 1.45714 1.07178 1.36853 1.48547 1.18447 0.82686 0.83175 0.79537 1.90700 1.85563 1.29575 1.34881 1.19423 0.92264 1.01046 1.13730 1.20621 0.96061 0.94560 0.96383 1.20275 0.93293 1.03246 1.09572 1.20798 0.96239 0.96590 0.97773 1.21318 0.98372 0.97134 0.99683 1.17471 0.88994 0.90888 0.88277 1.20132 1.15085 1.01773 1.07411 0.87837 1.26093 0.93124 0.97896 0.97684 1.69716 1.20222 1.29182 1.22690 0.86129 0.78560 0.82073 0.79284 1.18017 1.19888 1.19909 1.23415 0.89501 0.87745 0.94661 1.23029 0.99775 1.02273 0.93139 1.23235 0.98860 0.97964 0.98906 1.23467 1.01499 0.96085 0.81641 1.88364 1.60020 1.48601 1.28401 0.91385 0.91843 0.92011 0.93719 0.93460 0.90554 0.88389 0.77473 0.89445 0.89100 0.89058 0.86753 0.90753 0.89245 0.90044 0.90450 0.89992 0.89707 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.15 0.38 -0.86 16 2 C 0.05 0.51 6.50 37.15 0.24 0.75 16 3 O -0.36 -4.69 10.02 -49.22 -0.49 -5.18 16 4 C 0.06 0.83 3.75 -26.01 -0.10 0.73 16 5 H 0.09 1.02 7.65 -51.93 -0.40 0.62 16 6 C -0.16 -2.40 7.74 -25.66 -0.20 -2.60 16 7 C 0.13 2.07 4.03 -67.37 -0.27 1.80 16 8 H 0.11 2.07 7.50 -51.93 -0.39 1.68 16 9 N -0.73 -12.48 4.64 -54.34 -0.25 -12.73 16 10 C 0.57 12.78 7.72 -12.52 -0.10 12.69 16 11 O -0.53 -13.79 13.25 5.27 0.07 -13.72 16 12 C -0.26 -6.16 5.92 -104.37 -0.62 -6.77 16 13 C -0.06 -1.17 9.52 -39.22 -0.37 -1.55 16 14 C -0.24 -5.02 10.03 -39.37 -0.39 -5.41 16 15 C -0.10 -2.09 10.01 -39.60 -0.40 -2.49 16 16 C -0.15 -3.63 8.62 -38.88 -0.34 -3.97 16 17 C 0.15 3.89 5.47 -106.54 -0.58 3.31 16 18 C -0.42 -11.30 7.59 -37.82 -0.29 -11.59 16 19 H 0.10 2.92 6.04 -52.49 -0.32 2.61 16 20 C 0.07 1.80 5.23 -17.30 -0.09 1.71 16 21 N -0.79 -20.50 11.32 55.56 0.63 -19.87 16 22 Si 0.92 19.67 29.57 -169.99 -5.03 14.64 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C 0.09 1.19 1.40 -89.97 -0.13 1.06 16 27 C -0.14 -1.61 5.25 -24.99 -0.13 -1.74 16 28 C -0.15 -1.44 7.16 -24.38 -0.17 -1.61 16 29 C 0.05 0.54 7.79 38.21 0.30 0.84 16 30 O -0.34 -4.86 10.77 -49.22 -0.53 -5.39 16 31 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.39 5.70 6.05 -40.82 -0.25 5.45 16 39 H 0.09 1.45 6.44 -52.49 -0.34 1.11 16 40 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.11 2.91 6.77 -52.48 -0.36 2.56 16 43 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 44 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 45 H 0.08 0.78 7.78 -51.93 -0.40 0.37 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -30.48 395.02 -10.39 -40.88 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.49 Total: 11.13 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -3.25 Total: -15.71 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.38 Total: -32.61 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.95 Total: -24.29 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.48 -10.39 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.932 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds