Wall clock time and date at job start Wed Apr 1 2020 03:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.43840 * 2 1 4 4 O 1.44559 * 110.39344 * 122.35766 * 2 1 3 5 5 C 1.44470 * 105.36836 * 158.78625 * 4 2 1 6 6 C 1.54610 * 104.82397 * 319.84109 * 5 4 2 7 7 C 1.53923 * 110.39477 * 237.64104 * 2 1 3 8 8 C 1.52642 * 110.20798 * 335.98906 * 7 2 1 9 9 N 1.47281 * 108.38448 * 173.34203 * 8 7 2 10 10 C 1.34779 * 121.05064 * 130.41681 * 9 8 7 11 11 O 1.21608 * 120.00222 * 3.94424 * 10 9 8 12 12 C 1.47437 * 119.99938 * 183.94751 * 10 9 8 13 13 C 1.39232 * 120.28021 * 305.35942 * 12 10 9 14 14 C 1.38215 * 120.09074 * 179.97438 * 13 12 10 15 15 C 1.38831 * 120.67745 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.56886 * 0.02562 * 15 14 13 17 17 C 1.40708 * 119.88212 * 359.97438 * 16 15 14 18 18 C 1.40894 * 120.32482 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99778 * 145.64338 * 18 17 16 20 20 C 1.40267 * 119.99845 * 325.63732 * 18 17 16 21 21 N 1.30623 * 120.00618 * 354.53272 * 20 18 17 22 22 Si 1.86807 * 119.99769 * 174.52991 * 20 18 17 23 23 H 1.48505 * 109.46738 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47244 * 120.00065 * 22 20 18 25 25 H 1.48497 * 109.47193 * 239.99976 * 22 20 18 26 26 C 1.47159 * 117.89562 * 310.68458 * 9 8 7 27 27 C 1.52867 * 108.75466 * 50.74679 * 26 9 8 28 28 H 1.08993 * 109.37082 * 67.28971 * 27 26 9 29 29 C 1.52997 * 109.62458 * 187.37649 * 27 26 9 30 30 O 1.42215 * 110.48093 * 98.81351 * 7 2 1 31 31 H 1.09007 * 109.46943 * 182.35779 * 1 2 3 32 32 H 1.08995 * 109.47657 * 302.36041 * 1 2 3 33 33 H 1.09001 * 109.47076 * 62.36321 * 1 2 3 34 34 H 1.09010 * 110.36662 * 201.00938 * 5 4 2 35 35 H 1.09002 * 110.46975 * 78.72968 * 5 4 2 36 36 H 1.08996 * 110.55077 * 265.31368 * 6 5 4 37 37 H 1.08995 * 110.54322 * 142.50107 * 6 5 4 38 38 H 1.08997 * 109.68338 * 53.61299 * 8 7 2 39 39 H 1.09009 * 109.70848 * 293.08028 * 8 7 2 40 40 H 1.07999 * 119.95260 * 359.97438 * 13 12 10 41 41 H 1.08000 * 119.66000 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.71610 * 180.27365 * 15 14 13 43 43 H 1.07999 * 120.05751 * 180.02562 * 16 15 14 44 44 H 0.97004 * 120.00202 * 180.02562 * 21 20 18 45 45 H 1.09009 * 109.62786 * 170.51106 * 26 9 8 46 46 H 1.08997 * 109.63092 * 291.08616 * 26 9 8 47 47 H 1.09003 * 109.47370 * 179.89951 * 29 27 26 48 48 H 1.09001 * 109.47206 * 299.89756 * 29 27 26 49 49 H 1.09003 * 109.47643 * 59.89637 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 8 2.0337 -0.7252 1.1446 5 6 3.3844 -1.1009 0.7957 6 6 3.3080 -1.5152 -0.6919 7 6 2.0663 -0.7722 -1.2187 8 6 1.0236 -1.7731 -1.7094 9 7 1.5091 -2.3720 -2.9643 10 6 1.5138 -3.7082 -3.1407 11 8 1.0470 -4.4361 -2.2856 12 6 2.0850 -4.2875 -4.3703 13 6 1.6318 -3.8705 -5.6190 14 6 2.1704 -4.4157 -6.7692 15 6 3.1648 -5.3818 -6.6968 16 6 3.6323 -5.8147 -5.4773 17 6 3.1008 -5.2757 -4.2912 18 6 3.5722 -5.7126 -3.0374 19 1 3.6322 -5.0192 -2.2115 20 6 3.9636 -7.0481 -2.8619 21 7 3.7915 -7.9115 -3.8269 22 14 4.7310 -7.5920 -1.2479 23 1 4.8147 -6.4324 -0.3240 24 1 3.8932 -8.6536 -0.6344 25 1 6.0944 -8.1226 -1.5020 26 6 1.9944 -1.4656 -4.0172 27 6 3.0093 -0.5002 -3.4052 28 1 3.9002 -1.0530 -3.1075 29 6 3.3896 0.5661 -4.4344 30 8 2.4311 0.1283 -2.2572 31 1 -0.3633 -1.0269 0.0423 32 1 -0.3634 0.5500 0.8680 33 1 -0.3633 0.4767 -0.9104 34 1 3.7144 -1.9409 1.4070 35 1 4.0596 -0.2542 0.9195 36 1 3.1756 -2.5933 -0.7825 37 1 4.2020 -1.1923 -1.2253 38 1 0.0785 -1.2606 -1.8887 39 1 0.8820 -2.5531 -0.9611 40 1 0.8584 -3.1199 -5.6890 41 1 1.8140 -4.0869 -7.7342 42 1 3.5778 -5.7941 -7.6055 43 1 4.4064 -6.5664 -5.4305 44 1 4.0618 -8.8351 -3.7053 45 1 2.4722 -2.0449 -4.8074 46 1 1.1578 -0.9008 -4.4283 47 1 4.1119 1.2541 -3.9949 48 1 3.8300 0.0866 -5.3086 49 1 2.4979 1.1173 -4.7330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601540267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:09 Heat of formation + Delta-G solvation = -94.677893 kcal Electronic energy + Delta-G solvation = -32621.545962 eV Core-core repulsion = 28513.612368 eV Total energy + Delta-G solvation = -4107.933594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.96665 -39.00640 -37.75957 -36.81413 -34.33942 -33.69693 -33.45240 -31.65303 -30.58099 -30.10376 -29.65500 -27.04580 -26.07720 -25.45975 -24.78103 -22.86234 -21.98326 -21.19381 -20.90625 -19.54224 -18.75865 -17.35264 -17.17913 -16.63544 -15.97892 -15.92247 -15.57023 -15.28054 -15.19420 -14.82632 -14.36429 -14.32360 -13.88810 -13.59943 -13.41961 -12.98883 -12.81254 -12.63476 -12.55410 -12.44167 -12.37833 -12.23736 -11.96561 -11.93502 -11.68487 -11.49508 -11.33277 -11.23911 -11.19860 -10.94215 -10.86366 -10.80975 -10.52464 -10.41764 -10.02325 -9.90655 -9.78294 -9.70212 -9.33821 -8.78655 -8.07617 -7.60577 -7.47200 -6.82277 -4.51338 2.42089 2.73273 3.04550 3.10653 3.14212 3.33229 3.49913 3.78134 3.83389 3.90367 4.47045 4.56408 4.66925 4.71859 4.91700 5.05321 5.08142 5.15294 5.20143 5.28402 5.43287 5.44595 5.46984 5.51736 5.62417 5.68095 5.70252 5.79213 5.80893 5.89457 5.91901 5.98047 6.00380 6.06784 6.08146 6.11021 6.19104 6.25628 6.47758 6.66099 6.90487 6.93353 7.01028 7.15324 7.26443 7.36549 7.57473 7.77543 7.87943 8.00777 8.12732 8.46264 8.71841 8.77428 9.09250 10.12229 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.004858 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.559836 B = 5762.824255 C = 7356.266482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.091 3.909 3 H 0.081 0.919 4 O -0.366 6.366 5 C 0.050 3.950 6 C -0.180 4.180 7 C 0.082 3.918 8 C 0.097 3.903 9 N -0.624 5.624 10 C 0.588 3.412 11 O -0.534 6.534 12 C -0.247 4.247 13 C -0.067 4.067 14 C -0.238 4.238 15 C -0.096 4.096 16 C -0.147 4.147 17 C 0.148 3.852 18 C -0.437 4.437 19 H 0.075 0.925 20 C 0.077 3.923 21 N -0.795 5.795 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.079 3.921 27 C 0.070 3.930 28 H 0.067 0.933 29 C -0.140 4.140 30 O -0.365 6.365 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.282 0.718 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.263 14.467 2.022 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.099 0.901 4 O -0.285 6.285 5 C -0.027 4.027 6 C -0.218 4.218 7 C 0.041 3.959 8 C -0.026 4.026 9 N -0.360 5.360 10 C 0.380 3.620 11 O -0.409 6.409 12 C -0.252 4.252 13 C -0.086 4.086 14 C -0.258 4.258 15 C -0.115 4.115 16 C -0.167 4.167 17 C 0.144 3.856 18 C -0.466 4.466 19 H 0.093 0.907 20 C -0.141 4.141 21 N -0.420 5.420 22 Si 0.738 3.262 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.044 4.044 27 C 0.012 3.988 28 H 0.085 0.915 29 C -0.198 4.198 30 O -0.285 6.285 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.129 0.871 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.113 13.919 2.654 14.170 hybrid contribution 0.483 -0.624 0.329 0.855 sum 0.371 13.295 2.983 13.630 Atomic orbital electron populations 1.21917 0.92602 1.03531 1.02639 1.22679 0.95483 0.95501 0.83091 0.90124 1.89193 1.27826 1.74439 1.37090 1.23365 0.84459 0.99851 0.95012 1.23504 0.98817 1.02832 0.96630 1.22680 0.94337 0.90258 0.88650 1.22150 0.95784 0.96365 0.88278 1.48285 1.65808 1.06155 1.15750 1.18569 0.76639 0.79758 0.87026 1.90692 1.45869 1.59115 1.45249 1.19466 1.05569 1.09415 0.90720 1.20592 0.97881 0.97994 0.92084 1.20301 1.04605 1.04765 0.96088 1.20825 0.97015 0.96802 0.96876 1.21374 1.02009 1.02297 0.90978 1.17378 0.87210 0.87375 0.93616 1.19497 1.35813 0.94946 0.96381 0.90670 1.25903 0.93197 0.96544 0.98496 1.69669 1.35127 1.04350 1.32833 0.86166 0.78878 0.79560 0.81641 1.18393 1.19665 1.19726 1.22427 0.97631 0.92440 0.91928 1.22518 0.95726 0.94292 0.86255 0.91473 1.21707 1.02124 0.98306 0.97638 1.87768 1.81283 1.33127 1.26302 0.91035 0.91584 0.90617 0.88780 0.92126 0.89197 0.89653 0.91007 0.88063 0.88975 0.88953 0.88989 0.86038 0.90687 0.87075 0.91623 0.91758 0.90469 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.29 37.15 0.31 -1.34 16 2 C 0.09 1.16 3.59 -26.25 -0.09 1.06 16 3 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 4 O -0.37 -5.22 11.35 -35.23 -0.40 -5.62 16 5 C 0.05 0.64 7.65 38.00 0.29 0.93 16 6 C -0.18 -2.65 5.78 -25.37 -0.15 -2.79 16 7 C 0.08 1.17 0.97 -89.81 -0.09 1.08 16 8 C 0.10 1.58 3.89 -3.80 -0.01 1.56 16 9 N -0.62 -11.39 2.91 -174.08 -0.51 -11.90 16 10 C 0.59 13.47 6.40 -12.51 -0.08 13.39 16 11 O -0.53 -14.11 15.82 5.27 0.08 -14.02 16 12 C -0.25 -5.84 4.89 -104.36 -0.51 -6.35 16 13 C -0.07 -1.39 7.49 -39.22 -0.29 -1.69 16 14 C -0.24 -4.86 10.03 -39.37 -0.39 -5.26 16 15 C -0.10 -2.09 10.01 -39.60 -0.40 -2.49 16 16 C -0.15 -3.61 8.62 -38.88 -0.34 -3.95 16 17 C 0.15 3.81 5.52 -106.54 -0.59 3.22 16 18 C -0.44 -11.58 7.86 -37.82 -0.30 -11.88 16 19 H 0.08 2.01 7.40 -52.48 -0.39 1.63 16 20 C 0.08 1.94 5.32 -17.30 -0.09 1.85 16 21 N -0.79 -20.40 10.97 55.56 0.61 -19.79 16 22 Si 0.91 19.30 29.57 -169.99 -5.03 14.28 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 26 C 0.08 1.20 4.95 -3.75 -0.02 1.18 16 27 C 0.07 0.94 3.10 -26.80 -0.08 0.86 16 28 H 0.07 0.98 6.49 -51.93 -0.34 0.64 16 29 C -0.14 -1.44 9.57 37.16 0.36 -1.09 16 30 O -0.37 -5.07 9.84 -35.23 -0.35 -5.41 16 31 H 0.07 0.85 6.75 -51.92 -0.35 0.50 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 34 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.59 7.67 -51.93 -0.40 1.19 16 37 H 0.08 1.19 6.61 -51.93 -0.34 0.85 16 38 H 0.07 1.05 6.20 -51.93 -0.32 0.73 16 39 H 0.10 1.86 6.92 -51.92 -0.36 1.50 16 40 H 0.09 1.69 7.45 -52.49 -0.39 1.30 16 41 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.12 3.07 6.48 -52.49 -0.34 2.73 16 44 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 45 H 0.11 1.81 5.00 -51.92 -0.26 1.55 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -29.74 379.83 -9.59 -39.33 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.25 Total: 9.11 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.48 Total: -11.70 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.10 Total: -31.69 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.66 Total: -25.05 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.74 -9.59 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.352 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds