Wall clock time and date at job start Wed Apr 1 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.43840 * 2 1 4 4 O 1.44559 * 110.39344 * 122.35766 * 2 1 3 5 5 C 1.44470 * 105.36836 * 158.78625 * 4 2 1 6 6 C 1.54610 * 104.82397 * 319.84109 * 5 4 2 7 7 C 1.53923 * 110.39477 * 237.64104 * 2 1 3 8 8 C 1.52642 * 110.20798 * 335.98906 * 7 2 1 9 9 N 1.47281 * 108.38448 * 173.34203 * 8 7 2 10 10 C 1.34779 * 121.05064 * 130.41681 * 9 8 7 11 11 O 1.21608 * 120.00222 * 3.94424 * 10 9 8 12 12 C 1.47437 * 119.99938 * 183.94751 * 10 9 8 13 13 C 1.39232 * 120.28021 * 305.35942 * 12 10 9 14 14 C 1.38215 * 120.09074 * 179.97438 * 13 12 10 15 15 C 1.38831 * 120.67745 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.56886 * 0.02562 * 15 14 13 17 17 C 1.40708 * 119.88212 * 359.97438 * 16 15 14 18 18 C 1.40894 * 120.32482 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99778 * 145.64338 * 18 17 16 20 20 C 1.40267 * 119.99845 * 325.63732 * 18 17 16 21 21 N 1.30623 * 120.00618 * 354.53272 * 20 18 17 22 22 Si 1.86807 * 119.99769 * 174.52991 * 20 18 17 23 23 H 1.48505 * 109.46738 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47244 * 120.00065 * 22 20 18 25 25 H 1.48497 * 109.47193 * 239.99976 * 22 20 18 26 26 C 1.47159 * 117.89562 * 310.68458 * 9 8 7 27 27 C 1.52867 * 108.75466 * 50.74679 * 26 9 8 28 28 H 1.08993 * 109.37082 * 67.28971 * 27 26 9 29 29 C 1.52997 * 109.62458 * 187.37649 * 27 26 9 30 30 O 1.42215 * 110.48093 * 98.81351 * 7 2 1 31 31 H 1.09007 * 109.46943 * 182.35779 * 1 2 3 32 32 H 1.08995 * 109.47657 * 302.36041 * 1 2 3 33 33 H 1.09001 * 109.47076 * 62.36321 * 1 2 3 34 34 H 1.09010 * 110.36662 * 201.00938 * 5 4 2 35 35 H 1.09002 * 110.46975 * 78.72968 * 5 4 2 36 36 H 1.08996 * 110.55077 * 265.31368 * 6 5 4 37 37 H 1.08995 * 110.54322 * 142.50107 * 6 5 4 38 38 H 1.08997 * 109.68338 * 53.61299 * 8 7 2 39 39 H 1.09009 * 109.70848 * 293.08028 * 8 7 2 40 40 H 1.07999 * 119.95260 * 359.97438 * 13 12 10 41 41 H 1.08000 * 119.66000 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.71610 * 180.27365 * 15 14 13 43 43 H 1.07999 * 120.05751 * 180.02562 * 16 15 14 44 44 H 0.97004 * 120.00202 * 180.02562 * 21 20 18 45 45 H 1.09009 * 109.62786 * 170.51106 * 26 9 8 46 46 H 1.08997 * 109.63092 * 291.08616 * 26 9 8 47 47 H 1.09003 * 109.47370 * 179.89951 * 29 27 26 48 48 H 1.09001 * 109.47206 * 299.89756 * 29 27 26 49 49 H 1.09003 * 109.47643 * 59.89637 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 8 2.0337 -0.7252 1.1446 5 6 3.3844 -1.1009 0.7957 6 6 3.3080 -1.5152 -0.6919 7 6 2.0663 -0.7722 -1.2187 8 6 1.0236 -1.7731 -1.7094 9 7 1.5091 -2.3720 -2.9643 10 6 1.5138 -3.7082 -3.1407 11 8 1.0470 -4.4361 -2.2856 12 6 2.0850 -4.2875 -4.3703 13 6 1.6318 -3.8705 -5.6190 14 6 2.1704 -4.4157 -6.7692 15 6 3.1648 -5.3818 -6.6968 16 6 3.6323 -5.8147 -5.4773 17 6 3.1008 -5.2757 -4.2912 18 6 3.5722 -5.7126 -3.0374 19 1 3.6322 -5.0192 -2.2115 20 6 3.9636 -7.0481 -2.8619 21 7 3.7915 -7.9115 -3.8269 22 14 4.7310 -7.5920 -1.2479 23 1 4.8147 -6.4324 -0.3240 24 1 3.8932 -8.6536 -0.6344 25 1 6.0944 -8.1226 -1.5020 26 6 1.9944 -1.4656 -4.0172 27 6 3.0093 -0.5002 -3.4052 28 1 3.9002 -1.0530 -3.1075 29 6 3.3896 0.5661 -4.4344 30 8 2.4311 0.1283 -2.2572 31 1 -0.3633 -1.0269 0.0423 32 1 -0.3634 0.5500 0.8680 33 1 -0.3633 0.4767 -0.9104 34 1 3.7144 -1.9409 1.4070 35 1 4.0596 -0.2542 0.9195 36 1 3.1756 -2.5933 -0.7825 37 1 4.2020 -1.1923 -1.2253 38 1 0.0785 -1.2606 -1.8887 39 1 0.8820 -2.5531 -0.9611 40 1 0.8584 -3.1199 -5.6890 41 1 1.8140 -4.0869 -7.7342 42 1 3.5778 -5.7941 -7.6055 43 1 4.4064 -6.5664 -5.4305 44 1 4.0618 -8.8351 -3.7053 45 1 2.4722 -2.0449 -4.8074 46 1 1.1578 -0.9008 -4.4283 47 1 4.1119 1.2541 -3.9949 48 1 3.8300 0.0866 -5.3086 49 1 2.4979 1.1173 -4.7330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601540267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:08 Heat of formation + Delta-G solvation = -112.518766 kcal Electronic energy + Delta-G solvation = -32622.319601 eV Core-core repulsion = 28513.612368 eV Total energy + Delta-G solvation = -4108.707232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.21611 -40.56899 -39.04295 -38.53774 -35.91988 -35.46168 -34.57972 -32.67996 -32.04805 -31.63881 -31.33021 -28.32275 -27.51051 -27.01298 -26.01909 -24.00733 -23.61664 -22.85398 -22.09850 -20.93738 -20.19439 -19.17024 -18.40843 -18.21676 -17.46367 -17.14711 -16.94838 -16.64805 -16.46778 -16.25385 -15.99563 -15.69038 -15.38674 -14.99770 -14.60412 -14.50726 -14.44123 -14.14385 -13.92504 -13.60953 -13.51796 -13.47646 -13.23429 -13.13779 -13.03501 -13.00097 -12.92932 -12.63851 -12.49940 -12.38391 -12.26305 -12.06828 -11.91230 -11.84264 -11.67482 -11.50487 -11.19486 -11.09987 -10.86053 -10.55096 -9.57509 -9.34725 -9.29354 -8.68562 -6.46032 0.62426 0.96864 1.27346 1.40041 1.42259 1.82137 2.09037 2.13938 2.36498 2.70392 2.78037 3.31693 3.45208 3.58057 3.65616 3.77713 3.89484 3.97004 4.03182 4.07848 4.22179 4.28162 4.32973 4.35455 4.44897 4.52996 4.53227 4.54990 4.61869 4.69362 4.76590 4.79145 4.83958 4.86202 4.90743 4.97540 5.02904 5.05502 5.18414 5.19984 5.30533 5.31293 5.47702 5.57410 5.63118 5.81575 5.95976 6.06372 6.12180 6.23570 6.40877 6.60271 6.83006 6.89942 7.35509 8.28144 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.004858 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.559836 B = 5762.824255 C = 7356.266482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.093 3.907 3 H 0.100 0.900 4 O -0.383 6.383 5 C 0.052 3.948 6 C -0.181 4.181 7 C 0.086 3.914 8 C 0.097 3.903 9 N -0.617 5.617 10 C 0.583 3.417 11 O -0.585 6.585 12 C -0.260 4.260 13 C -0.064 4.064 14 C -0.222 4.222 15 C -0.094 4.094 16 C -0.171 4.171 17 C 0.117 3.883 18 C -0.472 4.472 19 H 0.051 0.949 20 C 0.038 3.962 21 N -0.825 5.825 22 Si 0.971 3.029 23 H -0.269 1.269 24 H -0.270 1.270 25 H -0.250 1.250 26 C 0.075 3.925 27 C 0.071 3.929 28 H 0.049 0.951 29 C -0.133 4.133 30 O -0.357 6.357 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.289 0.711 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 17.434 0.612 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.035 3.965 3 H 0.117 0.883 4 O -0.302 6.302 5 C -0.024 4.024 6 C -0.219 4.219 7 C 0.045 3.955 8 C -0.026 4.026 9 N -0.350 5.350 10 C 0.375 3.625 11 O -0.465 6.465 12 C -0.264 4.264 13 C -0.082 4.082 14 C -0.241 4.241 15 C -0.112 4.112 16 C -0.191 4.191 17 C 0.114 3.886 18 C -0.502 4.502 19 H 0.070 0.930 20 C -0.177 4.177 21 N -0.452 5.452 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.195 1.195 25 H -0.174 1.174 26 C -0.048 4.048 27 C 0.013 3.987 28 H 0.067 0.933 29 C -0.190 4.190 30 O -0.276 6.276 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.119 0.881 46 H 0.111 0.889 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.473 16.943 1.212 16.992 hybrid contribution 0.513 -1.412 0.617 1.624 sum 0.041 15.530 1.829 15.638 Atomic orbital electron populations 1.21946 0.91304 1.03038 1.04287 1.22838 0.96552 0.95660 0.81488 0.88261 1.89180 1.28422 1.74832 1.37790 1.23433 0.84613 1.00969 0.93372 1.23440 0.99533 1.00290 0.98609 1.22634 0.93306 0.90090 0.89482 1.22274 0.97587 0.95971 0.86727 1.48234 1.64502 1.05165 1.17122 1.18610 0.76298 0.81147 0.86445 1.90650 1.48385 1.60833 1.46632 1.19737 1.05146 1.09131 0.92387 1.20916 0.98040 0.98239 0.91034 1.20788 1.02767 1.02827 0.97672 1.21183 0.96804 0.96483 0.96761 1.21317 1.02710 1.03052 0.91974 1.17688 0.88338 0.88633 0.93927 1.19473 1.38670 0.95631 0.96416 0.93024 1.26578 0.93416 0.96155 1.01541 1.69702 1.36448 1.04764 1.34301 0.85319 0.79052 0.78622 0.77719 1.19349 1.19481 1.17377 1.22689 0.98993 0.92112 0.90962 1.22594 0.94316 0.95001 0.86820 0.93322 1.21705 1.03080 0.97426 0.96774 1.87791 1.81069 1.32587 1.26159 0.92594 0.89876 0.89028 0.88723 0.89419 0.93424 0.89178 0.88764 0.91120 0.85899 0.84737 0.86030 0.87773 0.90044 0.88059 0.88900 0.90698 0.89480 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.29 71.98 0.60 -2.39 16 2 C 0.09 2.20 3.59 30.90 0.11 2.31 16 3 H 0.10 2.04 8.08 -2.39 -0.02 2.02 16 4 O -0.38 -10.64 11.35 -148.98 -1.69 -12.33 16 5 C 0.05 1.34 7.65 72.53 0.55 1.89 16 6 C -0.18 -5.50 5.78 31.48 0.18 -5.32 16 7 C 0.09 2.40 0.97 -10.27 -0.01 2.39 16 8 C 0.10 3.19 3.89 86.11 0.34 3.52 16 9 N -0.62 -22.79 2.91 -822.92 -2.40 -25.19 16 10 C 0.58 27.86 6.40 86.67 0.55 28.41 16 11 O -0.58 -33.06 15.82 -4.06 -0.06 -33.13 16 12 C -0.26 -12.55 4.89 -19.70 -0.10 -12.65 16 13 C -0.06 -2.54 7.49 22.50 0.17 -2.37 16 14 C -0.22 -8.33 10.03 22.41 0.22 -8.10 16 15 C -0.09 -3.92 10.01 22.26 0.22 -3.70 16 16 C -0.17 -8.61 8.62 22.72 0.20 -8.42 16 17 C 0.12 6.34 5.52 -21.11 -0.12 6.22 16 18 C -0.47 -26.84 7.86 23.41 0.18 -26.65 16 19 H 0.05 3.05 7.40 -2.91 -0.02 3.03 16 20 C 0.04 2.00 5.32 85.37 0.45 2.46 16 21 N -0.83 -44.41 10.97 21.88 0.24 -44.17 16 22 Si 0.97 41.71 29.57 68.60 2.03 43.74 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 26 C 0.07 2.14 4.95 86.21 0.43 2.57 16 27 C 0.07 1.77 3.10 30.55 0.09 1.87 16 28 H 0.05 1.41 6.49 -2.39 -0.02 1.40 16 29 C -0.13 -2.28 9.57 71.98 0.69 -1.59 16 30 O -0.36 -9.10 9.84 -148.98 -1.47 -10.56 16 31 H 0.05 1.30 6.75 -2.38 -0.02 1.28 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.54 7.69 -2.39 -0.02 1.52 16 34 H 0.09 2.36 8.14 -2.38 -0.02 2.35 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.84 7.67 -2.39 -0.02 1.83 16 37 H 0.09 2.59 6.61 -2.39 -0.02 2.57 16 38 H 0.09 2.66 6.20 -2.39 -0.01 2.64 16 39 H 0.07 2.79 6.92 -2.38 -0.02 2.77 16 40 H 0.12 4.10 7.45 -2.91 -0.02 4.08 16 41 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.10 5.52 6.48 -2.91 -0.02 5.50 16 44 H 0.29 14.04 8.29 -92.71 -0.77 13.27 16 45 H 0.10 3.15 5.00 -2.38 -0.01 3.13 16 46 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.71 379.83 2.38 -67.33 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.96 Total: 33.85 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.77 Total: -19.55 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -2.16 Total: -69.36 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -3.22 Total: -56.02 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -69.71 2.38 -67.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.192 kcal (2) G-P(sol) polarization free energy of solvation -69.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds