Wall clock time and date at job start Wed Apr 1 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.51660 * 2 1 4 4 C 1.53294 * 109.51318 * 239.89802 * 2 1 3 5 5 N 1.47157 * 108.42710 * 187.74797 * 4 2 1 6 6 C 1.34779 * 120.99059 * 230.54461 * 5 4 2 7 7 O 1.21606 * 119.99602 * 184.32589 * 6 5 4 8 8 C 1.47435 * 120.00211 * 4.31438 * 6 5 4 9 9 C 1.39228 * 120.28519 * 306.06727 * 8 6 5 10 10 C 1.38217 * 120.09257 * 180.02562 * 9 8 6 11 11 C 1.38831 * 120.67564 * 359.97438 * 10 9 8 12 12 C 1.37595 * 120.56871 * 359.97438 * 11 10 9 13 13 C 1.40708 * 119.88386 * 0.02562 * 12 11 10 14 14 C 1.40891 * 120.32605 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99683 * 148.88535 * 14 13 12 16 16 C 1.40273 * 120.00287 * 328.89257 * 14 13 12 17 17 N 1.30629 * 119.99487 * 348.41353 * 16 14 13 18 18 Si 1.86795 * 120.00194 * 168.41223 * 16 14 13 19 19 H 1.48507 * 109.47212 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47015 * 119.99915 * 18 16 14 21 21 H 1.48501 * 109.47302 * 240.00076 * 18 16 14 22 22 C 1.47178 * 118.01247 * 50.81236 * 5 4 2 23 23 C 1.53597 * 108.14797 * 309.28851 * 22 5 4 24 24 C 1.53051 * 109.43232 * 172.48084 * 23 22 5 25 25 C 1.53119 * 109.16570 * 176.79498 * 24 23 22 26 26 O 1.42900 * 109.40821 * 302.54429 * 25 24 23 27 27 C 1.42912 * 114.12901 * 61.19069 * 26 25 24 28 28 C 1.53074 * 109.59995 * 292.24343 * 23 22 5 29 29 O 1.42839 * 109.35909 * 52.39482 * 23 22 5 30 30 H 1.08994 * 109.47315 * 180.10321 * 1 2 3 31 31 H 1.09003 * 109.46916 * 300.10062 * 1 2 3 32 32 H 1.08999 * 109.47351 * 60.09924 * 1 2 3 33 33 H 1.08990 * 109.67097 * 68.00957 * 4 2 1 34 34 H 1.09000 * 109.67237 * 307.48051 * 4 2 1 35 35 H 1.08003 * 119.95023 * 359.97438 * 9 8 6 36 36 H 1.08003 * 119.66041 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.71107 * 179.72938 * 11 10 9 38 38 H 1.07999 * 120.05395 * 179.97438 * 12 11 10 39 39 H 0.97004 * 119.99095 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.68220 * 69.06595 * 22 5 4 41 41 H 1.08997 * 109.68342 * 189.62417 * 22 5 4 42 42 H 1.08996 * 109.52489 * 296.70363 * 24 23 22 43 43 H 1.09000 * 109.52196 * 56.89318 * 24 23 22 44 44 H 1.09005 * 109.47914 * 182.56431 * 25 24 23 45 45 H 1.09003 * 109.47726 * 62.52743 * 25 24 23 46 46 H 1.08998 * 109.48185 * 178.81478 * 27 26 25 47 47 H 1.09000 * 109.49694 * 58.77356 * 27 26 25 48 48 H 1.09003 * 109.52320 * 303.19451 * 28 23 22 49 49 H 1.08999 * 109.52273 * 63.37823 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5012 -0.8757 -1.1352 6 6 4.3187 -0.5027 -2.1398 7 8 5.5146 -0.7076 -2.0584 8 6 3.7630 0.1534 -3.3375 9 6 2.7286 -0.4466 -4.0506 10 6 2.2110 0.1717 -5.1731 11 6 2.7116 1.3931 -5.6032 12 6 3.7328 2.0111 -4.9187 13 6 4.2774 1.4027 -3.7727 14 6 5.3236 2.0269 -3.0650 15 1 5.4121 1.8873 -1.9978 16 6 6.2501 2.8299 -3.7466 17 7 6.2857 2.8213 -5.0523 18 14 7.4328 3.9114 -2.7869 19 1 7.1898 3.7410 -1.3318 20 1 8.8297 3.5209 -3.1051 21 1 7.2186 5.3325 -3.1609 22 6 4.0409 -1.4516 0.1070 23 6 3.4303 -0.6895 1.2925 24 6 3.8232 -1.3818 2.5997 25 6 3.2789 -0.5728 3.7804 26 8 3.7858 0.7617 3.7154 27 6 3.4068 1.4738 2.5357 28 6 3.9568 0.7478 1.3051 29 8 2.0076 -0.6772 1.1652 30 1 -0.3633 -1.0276 0.0019 31 1 -0.3633 0.5154 0.8891 32 1 -0.3634 0.5123 -0.8908 33 1 1.8023 -0.1392 -2.1375 34 1 1.5759 -1.7074 -1.3212 35 1 2.3307 -1.3970 -3.7265 36 1 1.4084 -0.2998 -5.7208 37 1 2.2985 1.8603 -6.4850 38 1 4.1161 2.9610 -5.2609 39 1 6.9267 3.3763 -5.5236 40 1 3.7743 -2.5068 0.1686 41 1 5.1256 -1.3451 0.1201 42 1 3.4010 -2.3864 2.6211 43 1 4.9094 -1.4406 2.6685 44 1 3.5945 -1.0365 4.7150 45 1 2.1901 -0.5508 3.7347 46 1 3.8143 2.4840 2.5743 47 1 2.3197 1.5224 2.4736 48 1 5.0460 0.7364 1.3453 49 1 3.6302 1.2633 0.4019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601543677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:28 Heat of formation + Delta-G solvation = -102.791579 kcal Electronic energy + Delta-G solvation = -32608.713401 eV Core-core repulsion = 28500.427971 eV Total energy + Delta-G solvation = -4108.285430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.79642 -38.95222 -37.67873 -36.78500 -34.33332 -33.94301 -33.68749 -31.18719 -30.78777 -30.21613 -29.71006 -27.39093 -26.06248 -25.35904 -23.86977 -23.29189 -21.97800 -21.23670 -20.99719 -19.51289 -18.71261 -17.34371 -16.70786 -16.60669 -16.14450 -16.02204 -15.70785 -15.25566 -14.92695 -14.78900 -14.65060 -14.36964 -14.15842 -13.78593 -13.53510 -12.94155 -12.83204 -12.64608 -12.59118 -12.45446 -12.19178 -12.09875 -12.03292 -11.86368 -11.69670 -11.57623 -11.36784 -11.25169 -11.17630 -11.01069 -10.84663 -10.53980 -10.42583 -10.32497 -10.02426 -9.80652 -9.70764 -9.51143 -9.33350 -8.77936 -8.05295 -7.59845 -7.51310 -6.87435 -4.50916 2.42680 2.72686 3.03677 3.09955 3.13157 3.39751 3.60972 3.79062 3.87134 3.88212 4.53087 4.59843 4.69903 4.74142 4.96313 4.97187 5.14192 5.19017 5.27009 5.33793 5.44181 5.45749 5.53375 5.57002 5.62361 5.65442 5.72824 5.80721 5.82701 5.85774 5.94731 5.98369 6.01674 6.04361 6.09214 6.20416 6.25919 6.27107 6.48651 6.90036 6.94382 7.01692 7.13857 7.17371 7.26418 7.36308 7.58723 7.76842 7.88384 8.01388 8.12357 8.45797 8.70362 8.76749 9.10235 10.07385 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.004702 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.385674 B = 5953.934392 C = 7488.704910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.068 0.932 4 C 0.080 3.920 5 N -0.623 5.623 6 C 0.588 3.412 7 O -0.535 6.535 8 C -0.252 4.252 9 C -0.064 4.064 10 C -0.243 4.243 11 C -0.094 4.094 12 C -0.152 4.152 13 C 0.148 3.852 14 C -0.434 4.434 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.787 5.787 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.095 3.905 23 C 0.109 3.891 24 C -0.138 4.138 25 C 0.066 3.934 26 O -0.385 6.385 27 C 0.068 3.932 28 C -0.179 4.179 29 O -0.370 6.370 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.283 0.717 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.053 0.947 48 H 0.082 0.918 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 -3.531 11.378 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.044 4.044 5 N -0.359 5.359 6 C 0.380 3.620 7 O -0.411 6.411 8 C -0.257 4.257 9 C -0.082 4.082 10 C -0.262 4.262 11 C -0.113 4.113 12 C -0.171 4.171 13 C 0.144 3.856 14 C -0.463 4.463 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.412 5.412 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.028 4.028 23 C 0.069 3.931 24 C -0.176 4.176 25 C -0.011 4.011 26 O -0.304 6.304 27 C -0.008 4.008 28 C -0.217 4.217 29 O -0.290 6.290 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.127 -3.544 11.470 14.497 hybrid contribution 0.586 0.300 -0.331 0.737 sum -7.541 -3.243 11.139 13.837 Atomic orbital electron populations 1.21704 0.92521 1.02881 1.02680 1.22549 0.95024 0.96169 0.85188 0.91458 1.22531 0.80839 1.01182 0.99839 1.48208 1.06509 1.64940 1.16252 1.18569 0.85393 0.75800 0.82222 1.90684 1.15541 1.54744 1.80167 1.19400 1.06238 0.99044 1.01002 1.20585 0.94797 0.97302 0.95552 1.20275 1.05723 0.99188 1.01030 1.20801 0.97017 0.95383 0.98121 1.21315 0.96719 1.00871 0.98205 1.17358 0.89683 0.87969 0.90563 1.19554 1.07740 1.23011 0.95999 0.90435 1.25944 0.97931 0.95439 0.94868 1.69704 1.31457 1.31733 1.08268 0.86200 0.79855 0.79348 0.81096 1.18267 1.19671 1.19609 1.22143 1.00704 0.96472 0.83519 1.21783 0.81608 0.94897 0.94824 1.22133 1.02216 0.99955 0.93289 1.22484 0.98335 0.82605 0.97640 1.87896 1.75559 1.25789 1.41167 1.22496 0.99050 0.95290 0.84008 1.22715 1.02655 0.96407 0.99918 1.87878 1.20060 1.77332 1.43697 0.91818 0.91871 0.90587 0.87127 0.91731 0.89040 0.89010 0.89036 0.86251 0.90596 0.91674 0.88471 0.89985 0.89521 0.89093 0.92443 0.88948 0.92847 0.89926 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.57 37.15 0.36 -1.10 16 2 C 0.07 0.92 3.02 -26.58 -0.08 0.84 16 3 H 0.07 0.97 6.20 -51.93 -0.32 0.65 16 4 C 0.08 1.21 4.94 -3.53 -0.02 1.19 16 5 N -0.62 -11.28 2.60 -173.33 -0.45 -11.73 16 6 C 0.59 13.41 6.39 -12.51 -0.08 13.33 16 7 O -0.54 -14.09 15.71 5.27 0.08 -14.01 16 8 C -0.25 -5.97 4.93 -104.37 -0.51 -6.48 16 9 C -0.06 -1.33 7.46 -39.22 -0.29 -1.62 16 10 C -0.24 -4.98 10.03 -39.37 -0.39 -5.38 16 11 C -0.09 -2.06 10.01 -39.60 -0.40 -2.45 16 12 C -0.15 -3.73 8.64 -38.88 -0.34 -4.06 16 13 C 0.15 3.81 5.54 -106.54 -0.59 3.22 16 14 C -0.43 -11.47 7.92 -37.81 -0.30 -11.77 16 15 H 0.08 2.08 7.26 -52.49 -0.38 1.70 16 16 C 0.08 1.94 5.22 -17.30 -0.09 1.85 16 17 N -0.79 -20.09 11.05 55.56 0.61 -19.47 16 18 Si 0.91 19.05 29.58 -169.99 -5.03 14.02 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 C 0.10 1.50 5.32 -3.36 -0.02 1.49 16 23 C 0.11 1.49 0.69 -90.25 -0.06 1.43 16 24 C -0.14 -1.55 5.15 -26.64 -0.14 -1.69 16 25 C 0.07 0.73 6.70 37.22 0.25 0.98 16 26 O -0.39 -5.16 10.76 -35.23 -0.38 -5.54 16 27 C 0.07 0.89 6.70 37.21 0.25 1.14 16 28 C -0.18 -2.63 4.46 -26.64 -0.12 -2.75 16 29 O -0.37 -4.99 8.86 -35.23 -0.31 -5.31 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.81 4.94 -51.93 -0.26 1.55 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.69 7.36 -52.48 -0.39 1.31 16 36 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 3.01 6.44 -52.49 -0.34 2.67 16 39 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.70 7.11 -51.93 -0.37 1.33 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.63 7.83 -51.93 -0.41 0.23 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.67 7.83 -51.93 -0.41 0.26 16 48 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.09 1.42 6.05 -51.93 -0.31 1.10 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -29.68 379.42 -9.72 -39.40 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.39 Total: 8.78 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.57 Total: -11.85 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.16 Total: -31.21 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.61 Total: -24.85 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.68 -9.72 -39.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601543677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.396 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds