Wall clock time and date at job start Wed Apr 1 2020 04:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46771 * 2 1 4 4 C 1.46501 * 119.99755 * 269.99546 * 3 2 1 5 5 C 1.50699 * 109.47219 * 270.00423 * 4 3 2 6 6 H 1.08004 * 120.00296 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00130 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47113 * 90.00036 * 9 7 5 11 11 H 1.48507 * 109.46944 * 210.00287 * 9 7 5 12 12 H 1.48503 * 109.47453 * 330.00008 * 9 7 5 13 13 C 1.34772 * 120.00139 * 90.00266 * 3 2 1 14 14 O 1.21277 * 120.00260 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00025 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.47027 * 176.36239 * 15 13 3 17 17 C 1.34235 * 116.99707 * 184.37861 * 16 15 13 18 18 O 1.20829 * 120.00183 * 5.55079 * 17 16 15 19 19 C 1.50699 * 119.99751 * 185.56229 * 17 16 15 20 20 C 1.50699 * 115.55126 * 31.23607 * 19 17 16 21 21 C 1.38254 * 120.00553 * 245.90564 * 20 19 17 22 22 C 1.38213 * 120.00285 * 179.75158 * 21 20 19 23 23 C 1.38255 * 119.99632 * 0.52045 * 22 21 20 24 24 C 1.38215 * 120.00261 * 359.75524 * 23 22 21 25 25 C 1.38217 * 119.99840 * 66.18297 * 20 19 17 26 26 C 1.50704 * 119.99913 * 359.97438 * 25 20 19 27 27 C 1.53006 * 117.49645 * 245.53381 * 19 17 16 28 28 C 1.52996 * 117.49833 * 176.91362 * 19 17 16 29 29 H 1.08996 * 109.46924 * 60.00009 * 1 2 3 30 30 H 1.08999 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47001 * 300.00178 * 1 2 3 32 32 H 1.08999 * 109.47001 * 239.99822 * 2 1 3 33 33 H 1.09005 * 109.46705 * 119.99967 * 2 1 3 34 34 H 1.08998 * 109.46924 * 30.00185 * 4 3 2 35 35 H 1.08999 * 109.47018 * 150.00698 * 4 3 2 36 36 H 0.96994 * 120.00161 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47522 * 296.36183 * 15 13 3 38 38 H 1.09006 * 109.46731 * 56.36445 * 15 13 3 39 39 H 1.08006 * 119.99771 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.00071 * 180.29719 * 22 21 20 41 41 H 1.08005 * 119.99775 * 179.77452 * 23 22 21 42 42 H 1.08005 * 119.99919 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47020 * 92.87292 * 26 25 20 44 44 H 1.08998 * 109.47048 * 212.87515 * 26 25 20 45 45 H 1.09002 * 109.46709 * 332.87419 * 26 25 20 46 46 H 1.08994 * 117.49486 * 0.02562 * 27 19 17 47 47 H 1.09004 * 117.49711 * 145.01919 * 27 19 17 48 48 H 1.09003 * 117.49929 * 214.97266 * 28 19 17 49 49 H 1.08998 * 117.49891 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9136 2.0966 -3.4168 10 1 5.9776 0.8752 -4.2589 11 1 6.3921 3.2638 -4.2003 12 1 6.7737 1.9179 -2.2195 13 6 2.2430 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4723 16 8 2.3871 2.1648 3.5745 17 6 2.3113 1.6445 4.8096 18 8 2.0239 0.4803 4.9582 19 6 2.5844 2.5125 6.0109 20 6 2.2167 3.9660 5.8596 21 6 3.2047 4.9332 5.8635 22 6 2.8678 6.2659 5.7196 23 6 1.5419 6.6327 5.5826 24 6 0.5537 5.6664 5.5844 25 6 0.8912 4.3329 5.7228 26 6 -0.1863 3.2792 5.7242 27 6 3.8137 2.1788 6.8587 28 6 2.4116 1.8801 7.3933 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6752 3.5160 -4.4440 37 1 0.9309 1.0698 2.5587 38 1 2.5729 0.3849 2.5024 39 1 4.2401 4.6469 5.9753 40 1 3.6401 7.0209 5.7178 41 1 1.2783 7.6745 5.4738 42 1 -0.4821 5.9531 5.4778 43 1 -0.5635 3.1468 6.7382 44 1 -1.0011 3.5919 5.0713 45 1 0.2267 2.3369 5.3642 46 1 4.4249 1.3318 6.5473 47 1 4.3567 3.0108 7.3071 48 1 2.0322 2.5156 8.1936 49 1 2.0999 0.8365 7.4339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727016155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:15 Heat of formation + Delta-G solvation = -86.124284 kcal Electronic energy + Delta-G solvation = -30771.081240 eV Core-core repulsion = 26663.518559 eV Total energy + Delta-G solvation = -4107.562682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.20780 -40.90090 -40.19920 -38.23107 -37.16863 -36.93232 -34.95936 -33.71665 -31.79505 -31.58128 -30.77604 -28.60148 -27.87187 -26.29455 -24.84809 -24.20316 -23.82531 -23.07109 -22.25665 -20.96169 -20.25976 -19.07198 -18.67117 -18.15460 -17.87151 -17.71182 -17.10204 -16.94613 -16.39323 -16.12651 -15.96471 -15.74860 -15.29701 -14.98749 -14.78929 -14.58573 -14.55440 -14.20926 -14.00816 -13.95571 -13.63802 -13.54699 -13.30957 -13.20178 -13.09777 -12.98987 -12.70538 -12.61652 -12.53148 -12.32010 -12.25603 -12.13942 -12.10202 -11.84983 -11.76050 -11.73278 -11.63178 -11.30637 -10.76395 -10.65927 -9.71182 -9.57332 -9.50405 -8.25004 -6.39656 0.35972 0.48336 0.86595 1.19601 1.35449 1.38548 1.48739 1.59345 2.27713 2.41400 2.60977 2.85782 3.05023 3.37824 3.38958 3.52975 3.69211 3.80398 3.84375 3.90539 3.97933 4.04249 4.11706 4.22122 4.34952 4.37609 4.55536 4.56072 4.60543 4.66096 4.72139 4.80589 4.83313 4.86543 4.87791 4.91661 5.00151 5.09429 5.11554 5.15476 5.20792 5.25110 5.33282 5.51858 5.55074 5.61246 5.67094 5.77471 6.02182 6.10180 6.47591 6.61132 6.69198 7.18855 7.34456 8.82568 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.003021 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.607883 B = 9265.276386 C = 9928.481572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.060 3.940 16 O -0.342 6.342 17 C 0.503 3.497 18 O -0.522 6.522 19 C -0.123 4.123 20 C -0.062 4.062 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.086 4.086 26 C -0.112 4.112 27 C -0.132 4.132 28 C -0.110 4.110 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.030 0.970 35 H -0.002 1.002 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.107 0.893 47 H 0.133 0.867 48 H 0.130 0.870 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 -2.638 24.182 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.199 1.199 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.016 4.016 16 O -0.257 6.257 17 C 0.348 3.652 18 O -0.412 6.412 19 C -0.124 4.124 20 C -0.062 4.062 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.086 4.086 26 C -0.168 4.168 27 C -0.168 4.168 28 C -0.146 4.146 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.125 0.875 47 H 0.151 0.849 48 H 0.148 0.852 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.721 -2.317 23.992 24.773 hybrid contribution 0.778 0.110 -1.223 1.454 sum -4.943 -2.208 22.769 23.403 Atomic orbital electron populations 1.22173 0.94200 1.03844 1.01841 1.21877 0.95669 0.80986 1.04343 1.48202 1.63623 1.15216 1.05630 1.18777 0.95605 0.91584 0.79686 1.21696 0.97832 1.32322 1.06678 0.92877 1.25838 1.02412 0.94343 0.96339 1.70041 1.37797 1.33999 1.14768 0.85417 0.78914 0.78306 0.78188 1.18635 1.20524 1.19931 1.20492 0.78427 0.86641 0.85783 1.90687 1.46989 1.20149 1.87699 1.22849 1.03614 0.92918 0.82262 1.86613 1.78035 1.45618 1.15437 1.22829 0.72302 0.86404 0.83631 1.90629 1.45731 1.18195 1.86674 1.19584 1.11253 0.92280 0.89267 1.18659 0.93368 0.91268 1.02909 1.21229 0.99462 0.92993 0.99267 1.21413 0.97218 0.96284 1.00319 1.21487 0.93067 1.00517 0.98852 1.21265 1.00608 0.92077 1.00945 1.19946 0.94148 0.95479 0.99020 1.20823 0.96644 0.95767 1.03565 1.23383 0.90533 1.04527 0.98385 1.23316 0.98283 1.02563 0.90476 0.93609 0.88268 0.92504 0.89897 0.88617 0.95186 0.98361 0.92308 0.86122 0.86724 0.84726 0.84138 0.84018 0.84362 0.88776 0.90937 0.93847 0.87473 0.84899 0.85184 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16 2 C 0.09 2.88 5.96 86.38 0.51 3.39 16 3 N -0.59 -25.82 2.46 -826.14 -2.03 -27.85 16 4 C 0.26 14.44 5.16 85.63 0.44 14.88 16 5 C -0.55 -31.92 9.39 25.60 0.24 -31.68 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 9 Si 0.97 45.28 29.54 68.60 2.03 47.30 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.50 22.26 7.75 87.66 0.68 22.94 16 14 O -0.58 -32.06 16.09 15.75 0.25 -31.81 16 15 C 0.06 2.01 4.69 71.24 0.33 2.35 16 16 O -0.34 -12.26 9.40 -45.12 -0.42 -12.69 16 17 C 0.50 14.84 5.37 71.24 0.38 15.22 16 18 O -0.52 -15.81 15.93 21.95 0.35 -15.46 16 19 C -0.12 -2.79 1.43 -53.67 -0.08 -2.87 16 20 C -0.06 -1.52 4.83 -19.87 -0.10 -1.62 16 21 C -0.11 -2.60 9.23 22.27 0.21 -2.40 16 22 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 23 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 24 C -0.13 -2.92 9.71 22.27 0.22 -2.70 16 25 C -0.09 -2.06 5.86 -19.87 -0.12 -2.18 16 26 C -0.11 -2.30 9.63 71.24 0.69 -1.61 16 27 C -0.13 -2.14 9.43 30.60 0.29 -1.85 16 28 C -0.11 -1.70 9.75 30.59 0.30 -1.41 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.34 7.33 -2.39 -0.02 1.32 16 32 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 33 H 0.10 2.36 6.34 -2.38 -0.02 2.34 16 34 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 35 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.12 3.33 7.33 -2.39 -0.02 3.31 16 38 H 0.12 3.35 7.04 -2.38 -0.02 3.34 16 39 H 0.13 2.66 7.05 -2.91 -0.02 2.64 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 45 H 0.04 1.03 5.23 -2.39 -0.01 1.01 16 46 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.13 1.60 7.16 -2.39 -0.02 1.59 16 48 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.11 1.79 7.67 -2.39 -0.02 1.77 16 Total: -1.00 -80.16 409.80 7.05 -73.11 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.95 Total: 20.31 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.64 Total: 3.10 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.74 Total: -83.87 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: 0.18 Total: -59.95 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -80.16 7.05 -73.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727016155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.018 kcal (2) G-P(sol) polarization free energy of solvation -80.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds